Contig Data
morexGenes
Links



Map Locations of contig_40235 (5603 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40235

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55747 3 1499 bp MLOC_55747.1 Available Available LOC_Os12g38440.3, FRAME:-2, EVALUE:1e-81, 13112.m03961 protein XH domain containing protein, expressed





CDS Structure of MLOC_55747






Contig Sequence (5603 bp)

>contig_40235 5603 assembly3_WGSMorex_rbca.fasta
GGCGGCGGCGGCGGCGGCGGAGGCAGGGAAGAAATTGACGATTTTTATCTGTGCGATGGC
GTGAAGAATTGGAAGGAGGAAACCCTGAACCTGAGTTTCTGGGCGATGTTGATGCTGGGC
TGGGGGTAGTCGTTTTTCGTCGTGTTGGTGGGCCGGGTGGGCTGCGGGTAGTCGTTTTTC
GTCGTGTTGGTGGGCCGGGTGGGCTGGGCGTGTGAGCGCGGGCCCGGTCAGATTTGGATT
GGGCTCCACGCGGACGCGGCTTGCCTGTTCCTATCCGCCACATAGTGATGAATGAATGAA
TGAATGAAGAAGATAAACAAACGCTAATCTCCATGGTTTGGCGTCTTAAACCGCAAAAAA
TCTCACGCTGATGCAAACGGGAGCACATCAAATCAGACCGATCAGAAACAAGATCCTAGG
CATCGAGAGACCCTGTGGCTTCGTCAAGCACTGGCCATGGGAATCAATCATGACAATGAT
GATTAATCCCAGGCATCATCACCTCTTCTCATTCCTCCTTTTCAGACAATTGCTTGATTT
TCCCTGCCGATTTTTGTAAAAATATACGTCCGTCTTGTCCAGCTTTTGTACGCTTATACG
TACTATGTAAAATACAGTTGCACTTCAACCAAAGCAAGCAGCGAGGGTAAAAACAAACAG
GGCTTATGCCAATCAAAGACAAACACCTCATACAATTCAAATGAAACATAATGGTGACAA
CCATGTTGGTGCATGCAATTCAGTACTACTCCCTCCGTTCCTAAATATAAGTCTTTTAAG
AAATTGCACTAGGGATCTACATACAGAGCAAAATGAATGAATATACACTTTTAAATAAGT
CTACATACATCCGTATATAGTCCACTAGTAAAACCTTTAGAAAGACTTATATTTAGGAAC
GGAGGGAGTAATATTTTTGAGTTGATAACCTAAGCATCCTAGCACACTTAACTTGCTCTC
TTTTCCATACCTGAATGACAAATATCAGAGTAGCAGCTAATTTGTTACTAGTAGTAGATG
GTAGATAGAGTAAGTACAAGGTAGAACAGTACAAACTGCAGATAGTCATAAGCTACAGCT
TGATCCGACAACATCGAAATTGGTCCAACAACGTGAGAAGGGCTTGCTCTCATAGTCCCC
CCGTCCCCCCTCTCTAATTGGTACAGTCAGATTAATTAATTATTCAAAGCACACGCTCAT
AACAGTTTTTACTACGGAGTACTACTTTAACCACCAAGGGGATATGGCAACCTCTTTCCT
TGCTGGTGCATCCTACAGGTGCCATCAAATCTACCTGCATGATAACACAAGGGAGCGCAA
CGATCAGTACAAGTAAGATGCTTTTGGGGATTTCAGTAGCAGAGTTTGCTTACAAAGGAC
TTTGATCCTCCTTTCTTGTTTATAAGGGAACTTTTATTTAGACCAAGCAAGCTTTCATTG
TTGTAAGAGGAAACTATTTCTGGAAATAAAAAAGAACAGAAAACCATGACAGGGCAATGC
AAGAACTCGGTGTGGAGTTGTTCGTTGTTTCAATGATCTGATGTTTCATGGATGCACCAC
ACAAATATTTACCTTGAGATTCCTACAGTGGGTATCAAAGATTCATGTGCCGTATAGGCT
GATGCTCTGATGCAGCGAGCATTCACAAATCAAATGATAGGCAGAAGAATAGCATCTAGA
GAAACTGAAAGACTCTCAGATGATTAAACTAAATGCCTCACAGGTGATTAAACACAAGCA
TATGGGTATGGTTGAACTAGAAGCACAGCAGGCTTTCATTACTGTAAAAGGAAACTGTTA
CTGGAAAGAAAAGAAAAAACAATGATCTGATGTTTCATGGTCAGGCCTTATTCTTGCCTG
CCTGAATCACACAAACATGTACCTTGAGATTTCTACAGTGGGTACCAAAGACTCATGTGC
CACATAGGCTGATGTTCTGATGAGGCAAGCATTCACAAATCAAATGGTACAAAAGAATAG
AATCTAGAGAAAATGATAGGCTTTCAGATGATTAAAGATCAAGTAAATGCCCTCCCGCAA
AACAAACAAAAAGATCAAGTAAATGCCTAAGAGGTGACCAAAAACACAAGAATATGGCTG
AACCAGAAGCAAAGTAACGCATGCATGCAGCTGCCATTCAGATGCTATCGTCGTTAAAGT
CAAAAATGTTTCTGACAGACTCCCACAAATTATCATGACATGTTCCTATATATATGGAAA
ACTTACTACAGAGAAGCAGCTACATGTACCTGCGAGTCTTCCTGCGCTTGACCACTGTGA
GTTCTTGCACACGATCACCCATGTACTCCGTACACTCCATTAGGGTGGCTTTCCTGCCCT
CATTGTAGTTCCATAGCTCATAGACGATGCTCCTGTCGCCTAGGCAGTTGTACTCTTTCA
TCTCCATCAGCGCATCGACGACAGCTTTGTGGGGGCCTTCTCCCCATTCCTTCTTCAGTT
CTTGCAGCTTATCATCATTGACATTGAGAACCTCCTGATGATGCAGCAGCACATGATCTT
TTAATGTCGATAATTGGTCAACCACAACTAGTCAGATACCAAGAAGCTTTCCATAACTGT
AAGCTGACATACCTGATGATTGCCCTCAACCGTGATCGTGTTGAAGGGATTCCAGCTCAC
GTCAGTGATCCGCTTCTGCCACAGTGAGTATAGCTTACTTGATGCATCAGCGACTTTTGT
GGTACGTATCTTCTCAGCGCAAGCAATCTCGAATGCCTTCACATTCAGTTTGCCCATTTC
CTTTATCCCGATCATCCGCCCGCCGTATTTATCGATTTCAAGGAATTTCTGGGACAACGA
CTGGTATGTCACATCGGCTACCATGTCTATAAACAGTGCAATATCTATCTACATATATCT
GTACAAATATTTCATGACTGTAAGCAAACCTTGATCAGATGTTCACGCAGGGCCACCATG
ACATCATCTCTGCTTGGTGGAACAACTGAGGCTTGGCCAACAATGAGGTTGTTTACCAGC
ATGCGCGCATGACTCCCTTCCACCATGTCGGCATCATTTCCCGGAGGTCCTTCAGATGGC
ACTTCCAGTTGCCTCACTGGTCTTGTCTGCACCTGCTTCGTACCGAAACTTCTATAAGCA
AGACATGGTCCACTAAGGACAAACAATAAACAGAAAGGAAACTACCAAGTTACATAGACT
GAAGTTTTTTCATTTCTGCATGGATATAGACTACAACAAAAGATATATAACTTCTCAGGT
GTTAAGTTGCATGGCAATACGATGAACAGATAACAAAAGTAGGAAACATAATGAACAGAT
AACACTGCAAAACTAATGTGTTTCGTTTTCAAGCAAGGGTCAGCACTATAGGTTCAGGGG
TGTGATTACCTGACTAACTTGGACAAGCTCAGAAGCACATAGCTCAGGTTGATTTTTCTT
AGCTTCCCAGTCTTGAAGCTTCTTCTTTAAAAGCTCCAGCTCTTTTTTATTTGCAGAGGT
CTCCTCGTTTCCTGCTGCAAGCTCCTTGTTTACTTCCACAATCATTTTGTTTGCCTCCTC
AAGTTTGTCTTTCAGTGCTGCCAAAATGTCCCCAGTTACCATGACATTTTCACATCAAAA
CTGATATTTTAGCACTAAAATGGTCCAAGACTGAAATAGATGCACGCCGATGATGAAGCT
TACCAAAAATGTGTTGTGACACATTCCAATGGACACGAGTGTCATCAGGGTCCTAAGAAA
ACTAATTTAGAAATAGAACTTGAACCATGTGAAAGAGATTACAGACCATAATAATCATGC
TGGAGCTTCTCCTTTTCTTCTATAACTTCATTAACCACAGCCTTTGTTTCCATGTACTCG
AGGGTTGCATCCCTGTGATAGCATATCTTCGACTCAAGCTTTGAAACCAATGATCCAGCG
CGGGCCATTGCTCTGCCGTCACCCATAAAGTCTGCAGGTTCAGTAGCCAGCAGAGTATCA
CAGCATAGTCAGTTTACACCATGTGCACCGTTCCACACCATATCATACAATTTATACTAC
TAGTACTATTGTTGTTGTGGTGGTTAGCTATAGCTTTTATCTGACAGTTTGTGCCTAGCG
GTGCTTCCATGAGTTAAAATTCAGGTGATTATGTAGAAAAAAGGATCGTTTTGGCACTAC
CGAACATAGTAATGGGATGGACAATAAGCATAAGACACACACTTTTTATTTGGTATCCAG
TTCCTGAATTTCATCAAGGTTACATAAAGGTCCATAAACTTATCTCCCTTTGCATGCTCA
TTATTGTGTTTAGCTCATGCTTTATGTTCTTAAAAACATTCAGAAAACAGATGCTGCTGA
TAAGAGACTAGGATTGATTACGATGTGTGCTTCTCTGTTTTACCACCTTGTGGAAATACT
CCCTCGGTCTGAAAATACTTGTCATAGGAATGGATGTATCTAGATGTATGTCAGCTCTAG
ATACATTCATTTTTATCAATTTGTGCGACAAGTAATTCCGGACGGAGGGAGTACTAGTTA
ATAGAGGAGTAAATGTCATATGGTGTTCACAAATGTAGGCATGGCATCAACATTGTAGAT
CAAAACAATTGCAAGGTGGGATTAGTTATTTGGGCTACAACCTAACACGACGCTCCAGAA
TCGGAGAAAAAAATCCACAGCAAGTGATGCGGCAGATACACTGACCAGATCCAAGAACAC
GCAGAGAAGACCTAACCTTAGCAAATGGAGCACCACCGAGATGGCAAGAACCAGCACCAC
TGTCCTTCAAACGAGTATGTACTCTGCAAAGGGAAACGATAATCAGGTGAGTGAAGGGAC
TTATGCAATTAGCACTCCACAAAACCGAAAACGTAGTTGCCCACCCAGAAGAAACCCATA
ATAAAAGATAAAACATTTTCTCCAACTTTCGAAACAAGAAGAAACCAAAAAGAGTCGCAA
GATCTAAACCTGTTCTTTCAGACAAGCATCCCCAAAATCAAAAGTTCAGGTTTTGCAGGG
AAAAAACATTAAGTTTAGGGGGAAATGTTTCTCCCAAACCTCCAAACAGAAACATTTTCT
TTAACGTTCGAAACAAGAAGAAAACAACAACAAAAAAGTCGCAAGATCTGAACCTTCTGT
TTCAGACAGGCATCCCAAAATAAAAAATAAAAATAGGGTTTTTTGCAAGGAAAAAAAAGG
AAGTTCAGGAAATATAGTTTACTTCCAAACCTCCAAAAAGAACACAACTTGCGCGGGTAA
ATTTCACAAAGTTAGAGCGAGGCTCAAACACGAACAGACGCTCCCCTCGACCCTGTGGAA
AAGGGTCGCCTTTATAAATTATAACCAACCAAAAGAAACAGAGATCGGAGGCAAATCCAT
GGCCCATGGGGATTATCTTTGACCCTCTGGGAACAGCATTGGCGAAAGAAGTGAGTTTAT
CTGTAAGACTGTAAATCGCACAGCAAATCGAAGGCGGGGACGGCCTGTTCAGCCCCCCGA
GCGGCACAAGGAGAAATCTGCACCTTCTACGACGCACAAAGAAGAACAGCGAGACCGGAA
TAGCTAAGCGGAAGGGAAATCGCAGTACCAAATATTGGGCCTTCCTTGCACACAGGGTGG
GGGGTGGGGTGGGGGCGGGGTGG