morexGenes - Barley RNA-seq Database

Contig contig_40186
Source Contig contig_40186
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40186 (9026 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_40186

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55692	1	266 bp	MLOC_55692.1	Available	Available	None
MLOC_55694	6	991 bp	AK249737.1	Available	Available	None
MLOC_55693	1	653 bp	AK249737.1	Not available	Available	None
CDS Structure of MLOC_55692

CDS Structure of MLOC_55694

CDS Structure of MLOC_55693

Contig Sequence (9026 bp)

>contig_40186 9026 assembly3_WGSMorex_rbca.fasta
GGCGTGGACGCTGCTACAACTGCGGACAGAGGGGGCATTTCAAGCGCGACTGCACCAGGC
CAAGGAAGGAGGCAGCAGCGGCGGAGCAGGCTCTGCTGGCGCACGTCGGCGACGACCTCG
ACGGTCCTGCACTCCTCTGAGCCATGGCTTAGGGGGTGAATGTTGGGACAAATAAGCCAC
GGCTGGCACGAGGCGTTCGCGCGCCGGAGAGTGCGTCGAGGGTGCGCGTGCGTGCGCGCG
CCGGGAGGCGTGACAAAGCCCAGCCGTGCGGACTAGGGCGTGTGCGTGCGCGTCGTAGGG
GGTGCGTGTGTGCGTGGGTCTGTTAGCGAGTAACCAGGGAGACCGCGTCGGGCGCTGGAG
TGGCCGTGGCGATCGCATCAGAGCGCGTCGTGTGCACGAGCCGTAGCGCACGGATCGTGA
GGGAGTGGGAGGTGGGCGCGTCAGTGCACGACCCAGCGTGTCCGAGCGCGCGGGTATAAG
ACCCTCTCCATGCCTGTGCACTCGGTGAAAAGTTTGAGTTCGTGCTCAAGAAAATACAGA
GCGTGCCGTAGCTGACGGTGAAGGTGTTTGTGCACATGTAAAACCTCTCTGTTCATCTTC
CTCCCCTCCGAACGTGTCTCCGGCGATCATAGTCGGCTAGAGGTTTCATTTTAGCTGTCA
GGGAGGTGCAAGGTTAGAGACGGAGAAGGTGAGGGGCGGTTTGCTAGCATTGACCGGATT
CGACGGCTAGAAGATGCCAAATCAGACACGTAGGGTTCGGCTGATCCAAAGTTGGGCCGG
TCTACCAGCACCTGGCACCCGCCATTTATATTGACGAGATGATAGCAACCTTAGTTTGCA
AGCACGGCAATTTACTGACAAAAAGGTGAGCCGAGGCGGATCCAACTAAACTTGCCATCC
TCGACAAACATAATTGCCATGAAAAAACGTTTGATCTGTCATGCCTAAAAATCTGCCAGT
CGCTGGATATTCGAGTTCTTTGTATAATGTATTAGTGCCAGCTCATTGGTTGTAATTACT
CAATCTTGATATTAAGTTTTTGCAGGATGTGCTTGAGCTCATCTGCCGGTACAGTGATTA
GTCACCAGCCTTGATATGCACATATTTGTCTTCTCTGGAACGAGTTGACAAAAAATAGTA
CAAGACACTAATCAAATCTGCAGCTCTTCTCACATGTCGTGATGGCATGTGTGGTCGCAG
GGGTAGGGGCAATCGATGGCCCTCACTTCAGCCCGGCCAAAGTACCAGTCACTCACAGAT
TTCGCAATGCTCTGCGCACGCAAGAACAAGGCAAAAAATGAACCAATTATGTTGAAGTAT
ATAACGGTCACTTTAAAATTCAATTGATAACTATTTTTAAGGTTAAAGGGTTAATTCAAT
TGATAGCTAGTAGTAGATACCTTATTATGAATAGTAGGAGAGCCATTTGCATTCCAAGTA
GCCGGGACTTTGGACTGGCCGTGCGTGAAGCACGAGTTGATGAAGAGGCCGTAGCTCTTG
GAGCGGGACAAGCCTTGGACAATTCCCACCATCTGGTCCCTGAAAGCTATAGATTGACAT
TCGAGTTCAGATCATCGCTTGATCATCATATGCAAATATCATCATCTGGTGCGTCATTAA
ATTAATCTATATATGTGTATATACCTTGCAAGACTTTCATCTGGGATGCGTTGCAAGCTA
AACGATTGGACTTGCAGGCTCGCCACGTGCCGTTGTGGTCGGCCACGTCCGGGGCCAGGC
TTTCATGGATCTGAATTACATTTGCTCTTGATTGTCAACACAGACAAAAAGGAAACTATG
TCGAGATGATATCAGGTCAAATATATATACTATACCTGCCAGGTATCGTAGGCTGCATTC
AGCAGGAAGATGGGGGTATTTATGCTGCCGATTATATTCTGGGGGAAGAAGCACTGCATC
CATGTGCACATGAGATCGGTAGGCGGTCATGTCAGTTGAGTTTTGACGGGTTCATAAGAG
AGAAATCAATAGCCACTACTCCCTCCGTTCCTAAATGTAAGTCTTTTTAAGTTTTTACTA
GAGAATTATATATGGATGTATATAGACATACTTTAGAGTGTAGATACACTCATTTTGTTC
TGTATATAGTCTTCTAGTAAAATCTCTGAAAAGACTTATATTTAGAAACGGAGGAAGTAC
TCTATCTGGCATGCATGCATGATACTACTAATGAAATGAGCTGTGCATATATCACGTCAC
GCACCGAGGTGGCGTCGAGATGACCGGTGCAACTCCTGGGCAGGTTCTGAGCCACCCCAT
GCGTGGCTACAATGCCTCCGAAATAGGATCTCAAAGTACGGCCGCCGGAGATGTCGACGC
TGCATGGATCACCATATCGCACAAAACATATGCTGGTCAACAACTCATACTTAAGTATAT
TGTGGATGAGTTATCCATGCATGTGTATGTAACGTACGCGTCCAGGAAGAGTCCTGCGTC
GGCGAGACACTTGACGGTGGTGCTCCGGCCGGCGAAGAAGGTGCCGAACTGGTCGCAGTG
CAGGATCGCCGACAGCCCCCCGGCGGAGCCGCCCGCCAGCAGCACCTGATCCGCCGACGA
CATCCCAATGGAGAGGAGGTGCTGCATGACGGCGTTCCAAATGCGCTGGCCCCGGAAATA
GACCTTCGAGCCCGCGTTGTAGCCTTCGCCGGTGAAGGACGCGCCGTCGCAGTAGCGGAC
CATCACCCGGTTCCAGCTGTAGAAATCTGATGCGTACCGCAGACGTGCGAGCGTCAGTAA
ATCCAACCAACTTTGATGCATACCGCATGCGTGTTTACGAGCCATATACTCTTTTCGTTC
AAAAATATTTATCACAGAAATAAATGTATTTAAATATATTTTAATTTTAAATACATTTAT
TTTTATATATTTACTCGAGAAGTAATTCCGGACAAAAGAAGTATGTATGTTCGAACCAGG
GTTCTCAGCGGGGTTGGAGCTCAAGATGCCACGGAACTCCAGCTGCCTCTCCATGAGGTT
CGAGGAGCCGAGGCGGCTGCCCTTGCGGTACATGCACGCCATCACGCTCTCGCACCATCC
GCCTCCCTGCATTCGTTCAGCAGTATGTTCAATGGATTTGGTAAAACGTACTCAGTATCA
CTATCACATGTTCTGACAAAATATTTTTGTGTATATGCATGTACCTCCAGGTTGACGATC
CAGCTCTTCTTCCCTGCACCGGACCCCGGGTCCATGTGGTAGGCCGGCGGCGTACCATCC
ATGCACACTGCGCATCATTCACATGTGATACATTACATATGGGGTCTGCTTCTGGACACC
CTTATCCCAATAAATTTCCACATAATCATATACGTATATATCTACAAAGTTCACCCTAAC
TACCTCTATTATCTTAATACATGATCACATGTCACTTTATCAAAGGCCCACCATAAGAGC
ATCTCCAACAGTCTGTATGTTCAATCGTTGGTATAAGTGTCCACATCATCAACCAACAAC
ACATCATACAAGCTCTTTAATAGAGTGTATGTTAACCGTATATAAAATAACTAAGTGGGT
CCATTAAATGTTGAAAAAATAATCATGTTTGCCTCGGAGCTTGTGCATGAACCGTTGCTT
CAAGTTCATACGGTTTCATTTTTTTATTTTATTATTATGTGTCATGTCATCAACATCATC
TATGTGACAATTTTATCAACGATAATCATACGATCATTGGAGATGCCTTAACATGCATGA
GAAAGAGCTTTCCATTATTAATTGATCACATGCACATATCCCAACTCACCACACATGCCA
CCTCATCAAAGGTCCACTCAACTTGCAATTTTGTATTATATTATATCACTTATATTCAAA
ATATTTTTTGACTATACAGTAATAAATACAGTACGATGAAAAATGAATATCAATAAAGAA
TTTGCATGATTCAAAAAGAATATTATACTCCTACATGCAAGATAAATTTGCAGGATTTGA
TACTCCTACATGCAAGATGAATTTGCAGGAGTAGGGAATATGATGGTAGTTAGTGTGCAC
TTAAGACCGAATTTGTCAGGATTCAACCAATTCGAGACCATTGCAGTACAGTTGGAAACT
ATTCAATTCCGTTAGTTGTACCAGTCATTCCATTATTGATGCGATGGCATACCAAAGATT
CTATTGAATATTATTTTATAAGATATGATTTTATATGGTGTGCCAATAAGACGTGGACTA
GTAGGATGCGTTCTCAAGAAAAAATGGTGGAAAAAATATATCAAGAAAACAGAAACGGGG
AGGTGGGTGGGATGGAGGACGAAAAAAAGGACGAACAACATAATATTAAGTGATTTTTTA
AACAAGCATAATTAGAGAGATATATACAAACATAGAGTGTAGAAACCGACTGCAACGTTT
GAATTTCAATTTGGTGAATTTTTTTGCAAATCAAAATGGTTGAAAATAGATCTTCCATCT
AAGGTATGACAATTGAAAAGGATGGGTTTGTGGTGCTGGTTTTCGCCTGATTTCCTTTTT
GTAATCAGTTGGCTTGGCAATTTGTGTGTCCTTTTTATGAAAAGGCAGCCCTTACCAGTT
ACCACACATGCAGACATGCTTGAAAAAAAGAGGCACGTGTGAATACTTGTTGCTTCTGCC
TTTATGTTTGAGGCGAGCATCGCTAAACGTACATGTGATTTTTGAAACAACTAGACATAC
GTGTTATGACACTTACTAGTCCCTGGGCCAGCAAATGTGGCTTCTAGGGGACAATCAGAA
CTGGATTGTGGGGATTCACTTTGAATGGATATATAATTTGCAGTGATGTACAAAACCCTT
CCAAACTGATGAGTGCTGGGCCTTGTGGTAGGAAAACTGGACACGATCGTAACATATTAA
AGGTTGATTCAAAATTGGCATAAACACATGTAAATGTACATACCGGCCCCCTTGGCGACG
GCGGACGTGAGGATGGTGATAGGCACCGCCGGTACGCTCGGCGCCGACGCCCCGAGGACC
AAAACCACAAGAGGAAGCGCCCAAAGCTTGGTCATCCTCATCTTCTCCCCCATCTTCAAG
CTCGGCAATGGAGATGGATACTCACGACTCTCTCCCTGGCTCCTACAAATATGCTAGTCG
AATCGATGATTGAGCTGTTACAGGAATATATATATTGATGGTCCTCAGATAATACCAAAC
GAAGGGATTAAATTGGTAAAGAAAAATAAATAAAAGGTAGGTATTAAATGCAGGGACCAT
ATGCTTTGCATGTATCGAATCAATCCCTGCGCACATGCAGGGCTAGCAGAAGGAAAATGA
CATGGCACACCGCCGCCACCACAGAAGGGCCTAGCTACAACTTTGCTTACATGTACTTCC
ATATGTGCCAATTCGCCACCACAAAATTTCAAGAAATGGAGCTTCAAGATATATGGCTCG
TACGAGAAAGTCAATCACCCTGATCCTGCCTCCACATGTGCCAATTTGCCAGCACGTAAT
TTCAAGAAGTGAAGCTTCAAGATTTGTATGTCTCGTACGCTGGGATCGATATCCAAGCGA
ACCTTATCACCGCAAAAGTATATCTATCCATGAGACACGCAATGATCATATGACAAGGAC
ATTCTATAGTTAGGTGCATCTTCAAGGACGACCCATAAACCGTCAGCATTCGTTTGGACC
GTGCCATCCGTATTACGAAAGCCATTCAACGCAGGCATGTATCGGTCTGCCGAGCGGTCC
GACATGTTTTTTCCCGTAAACCGAAACCAAATGTGCGGGAGGGGGTAAGGGGTTTGCAAG
AGTCCACACACGCGAAATGTCACTTTTTGTCCTTGGCCCACTCAAAAGAAAGGCGGAGCC
CACACTCTTGTAGCACCCTGCATTGTTTCCGTACAAAAAATCCCCACTCTTTTCTTTCAT
CCCCCGCCGCTCTCCGTCCAACTCCCGCTCTTTTCTCCCACCCTCTCCTTCCTATCACCG
CCGACGCATGAATCCGTCGGAGAATCTAATGAGATGGAGGTGCCGGAGGATCCAAGCATC
ACGCTCGCCTAGAAGACCAACTTGGCTATGCGGCAAGATCGCCGCTTCAAAGCGAAGGCC
GCAAAGGAGGAGAAGATCAAGAAGCGGTTGGCTGCCGATGGGCCTAGTGGTGACGTTGGG
CATGGTGGTCGTGGCGGACGTCACCGGATGGGCACACTCACAGTCCAAACGTTGATGTGG
CCGGAGCATCAAGCCTCCGTACTACTACGCCACCAAGCAGCTTGGAACTCCCACGGGTAA
GGTGCCTAACATCGTCGACGTAAATGAGGCGTCGCTCTTCTCCGAGTATTCTTTGCCGCA
CCTTGCCCGGACGTGGCCGACGGTCGGGGAGCAGATGGGTGCTTTCACCTTGTTCCCTGC
AATGCCTAGAGTGGGGGAGCGGGCGCACTACGATCCGAACAGGGAGATGCTCGACATCAT
CCACGACGGAGGCGATGGAGGAGGAGAAGCCTTTGAGGACGGGCATGTGGAAGACTCCGA
CCCCATGCAGTACGATAACTACCAGCAACAACAGTCCTACACCCAGACGGCCACACACCA
GTCCTACATTCAGACTGGAGTGGACACACATAAACAACATCATTGGGTCGCCGGATAGCA
GCAACCAGAGGTGAAGGAGGAGGAGGAGGGGGAGGGGAGGACGATGATCCACCTGATATA
GTCGGCGATCCAAAGAAGAAGGGCAGAGAAGAAAGCTTCAACATGCGGGAGGACGATATG
TTGTGTGATGCATGGTTGACCACTAGCCTCGATCCTCTGCAAGGAGGTATACGTAGCGAC
GCAGATGGCACATTCATCGGGGAGCAAACGACTCGGATTGCCGGTCCAGCATGGCTGAAA
ATTGCACTAACTTCCGGAGTGATGTTCTTCTGGAGTCGGGCATGTAAAAACTAAGCATAC
TTACCTATTTTTGGTTGTGATTGGACTGGTCCAGCGGTGCAGGTGTGATTCGGAGTGCTG
TGTTGGTCAGACTAAATTTGAATTTCAAGTTGCCCTTTGCTCGCGGACATATACATGATA
ACGTTGATGGTGGCTTCTCGCATCCGTGTCTGCAGACTAGGCCCCTGTCCATGAATGGAT
GTGGCAGGAAATTTGCGGGTTGTCATTGGAGATGCCCTTATACCCACAACCTCTATAGTC
ACAACTTCCCAAAGTAAGATAAAGACAAGGACCAACCACCACCAAAGCTCTCAAGTCAAT
GCAAATATTGGATAACCTCCTCAAGCAAAAATTCCGCCATTTTCTCTTGAAGTTCTCGTA
TGCGGTCCTTTCGTAGGAGCCTTTGCCGCATCTCCTTCATCTTTAAAGAAGGAGATCAAT
ATGAATATATTAGTCGCGTGTACATATATTAGATCATGATAAAAAATTTGTGAATAGTAT
TTACGTACCCCAAGAGTTCTTGTATCTGAGCGTCGTTCGGTCATAAAGCGAATGTTCTCA
CAAACATAGTATGCACAGAGATTATTCCTATGTTTCTGCCGCATGCACCACTTTACGAGA
ATATAATTCAATCAGATAATAATCAAGCATGATAATGGTATTGAAACTGGAACTAAAGAG
ATGCGCGCACGTAGCTAGTACTACTTAGTTACCCTGAGCCGTGTCCATCTCAGCTTTGGT
TTCCATTCACCCTGAATCTCCTTGAAGAATCTTTTCCAAACCCTGCCCGACAAAGAAAAA
AATTAAAATAGACATTAATTACTTGATATCAGGAAATGAATTAAAGAGCCCAACATAGTG
CAATAATGATTGAAATTACGTGTCGAGCATCAACTTCAGATCCATCCACGTACTCTTTAT
CATCTTTTTTAGTGAGTCGAGTACTTCAACTTTTCCTCGTCGACACTAATGATTAGCAGG
ATCCAGTGGAAACTACGTTGTATAAGAGGACATGCATAACTCATCAAGTAACTACGTACA
CTTAACATTGAGTAAGAAAAATAGAATTTATAGTACAAGACAGTAACACTCATCTGAAGT
TGTAAGGAAATACTATTTCTAGTTGGGTATTTAGTGCCTCCAAAACCTATACAAATTCTC
CTCTATTTCATCTTTGTGCTTTTTTAATGTTACATCACAAATGGTATTTGGGTCAATGAA
ACCAATGCCAAAGACTCCATCTCTTTTCATCTCAAATATCTTCATTCTGCATAACACCAC
ACAAAATAATATAGTGAGGATGATTAGAGGCAAATGAACTACTAATGAGCTAGAGACTTA
AATTACAGAAAGAAATCAGACAATAGCAACTGACGAGAGATTTGTCGAGTACATCTTGAT
TATATAACTGAAACAATTCTTCATTTTCAATCCACAAATCTTTTGCATTGAAGTAATGCT
CTAGCTTGACTTTCACCATGAGGCTCTCTCGCCCGAGTTTTACTTCCCTCATGTACCAGG
TATGCAATTTGTACATTTGCATTGGTAGCTGCGGGACCTCCTCAGCCCGGGGAAAAATGT
CCGTGCTATTTGATCCTTTGTCACCATAGGCATTTGCTCGTCGCCCATCATGCCCACGAG
TTGTTCAACAGTGACACCGGACTCTCTAGCCATCTTTTTAATAGCAGAAGTGTCGATTTC
CTCCTTGGTACTCACCTTGAGGCGCGGGATCGACTTCACTGCCTGTTCTCCCAGCTGGGG
AATGGTTTTCCTCCTTTTCTCACTACCGCTCGAGTCCTTCTTCCGCTGTTCATGATATGC
CTTGCTAATAGAGTGTTCAAAGTCTGATCAATTTATCTCCGAAGGCGGATTAGCAAGATT
TTCCAGAACGCGTCGTGCGGTTTCCAAAGGTACTATATCCTTTGACGGCGGTGGAGATTT
CGGTCCAAAATATATTCTTGAGCCACTTTGGCGTCTCTTTCCTCCGTGGTCTTCTCGTAA
GCCAACTTCTTCCTTGATGATCTCTTCTGATTTGGACTTTGGTTCCTCATCAGAAAATGA
AATGACTGCGTACTGATACGTCCATTTTGCATNNNNNNNNNNNNTTGATATTTATCGCTT
TTTGGCTGTTATTACACTTCATGGTA