Map Locations of contig_40151 (8420 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40151

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55651 2 918 bp MLOC_55651.1 Available Available None
MLOC_55652 5 1841 bp MLOC_55652.2 Available Available None





CDS Structure of MLOC_55651






CDS Structure of MLOC_55652






Contig Sequence (8420 bp)

>contig_40151 8420 assembly3_WGSMorex_rbca.fasta
CTCGACACAAAGCTCCAGAGCACTGAGACGTAGGGTTGTTACCTCCGCGAGAGGGGCATG
AACTCATACATCGGGTGTACAAGCTTGTCGTAGCTACGACTCCGCCCTCTCCATTCGTAC
CCTACACCTATACTGTTAGGATCATTCTCACAACAGGTACATGAAGAAATGCATGCATAC
TACAAATTGATTAACAATGATTCTTGTGAAAAGGTTGCTGATGAGGTGAAAATAAAGAAT
GGCATCCTACCCCAATGACAAGGAAAATTTACTGATCGGTCTGGACTGTTAACATGTATC
AGTTGTGCATATTGTAACCGTGCACATTGGCACGTAATTCTCCTAGAATATAGGACCTAA
CCACCCTTGGGCATGCGTGTCTATTCTTCATGGAAGCCACTCCCTATGTAAACATGTGTT
TTACCGGTGTATGATTGAATCGAGTTGTCAATTAACTCTCCAACTTGGTATCAGCAGCCC
AGGTGCCTCGCCATGTCCGAGCAACACTCCTCGTCCTCCTCCGTGGCGACTCTCCCCGCC
ACCTCGCCGACCACCGCCTCGGCCTCCTCCGGCTCGGGCACCACGACTCCCTTTGTCTTC
GGCACAACCCTTACCCCCACCTTGTAGTTTGCCCCGCTCTTCTCCACCTCCATGCCCCCA
CCGACTCCGGCGCCGCCCGCTCGGCACCCGATCTTCAACGACAACCTCTCCGGCCACATC
AAGTTCCTGCTCAACCCAGCCGAGCACAATTATCACAAGTGGAAGGCTTTCTTCCTCATG
ATCCTGGTTCGCTACAGCGTCACCTATCTCATCGAGCATCCCCTCCCCCAACATCGACAG
GCAGTATCTCAAACTCGACGCCCATGTCGCTCTCGCCATGTATGCCACCACCTACGATCT
GTGGACGCGGATTCGTGACTACTTCCTCGCCAACCACGCGGCTCGCTACATGATGTTGAA
CCGTCAATATCGCAACCTCAAGCAAGGCGATCTCTCAGTCGATGAGTACACGCGTCGCAT
GAAGCTTGTCACCGTCGGCCTCGCCGACATCGACCACACCGTCTTCGAGGTCGACCTCAC
CACTTAGTTCCTCCACGACATCGATCAACGCCTCGACACCATACGCGTCGTCTTGGGAGA
CACAGTCCCTCTGCCACCATGCGAGACGGTCCTCTCGCACCTCAAGCTTGCCGAGGAGAA
TCTCGCTCAACGCACCTTTGAGGCAAGTGCCACCATCCTCGCCGTTCACGAAGGCGGATC
CCCTCGACGCCCTCCGGATCCGGCACGGGCGGCCTTGCTCCCCGCCTGGGCCCTGGCGAT
CGTGCTGCTCCACCGCCCGGCTGCAGGTCTTCCCCTCGATGTGGCGACGGTGGTGACTGA
GGGCGCGGACGCGGCCGAGGGCGTGGCGACCCAAACGGGCGCGGCCAGTCCTCCCCTCAG
GCGCCCTACAATCCATTCATGGGCTTCTTCGCTCCCTATGGCATGGCCATACCTCCGCCG
CGTCCCGGCTGGGTTCCCCCAACTCTGGCGGCGTCCTTGGCCCTCGCCCCGGCTCCCATG
TGCATGCCTACCCGATGCAGTCTTCCCCCTACACCGCGTTGACGCCTTACCTACCACCCT
CCTGGGATCAACTCTCCATGTTACACGCGGCGTACAACAACCAAGGCTTCAACACCAACG
GCTCGTTGGCACCCGAATGGTACCTTGACAGTGGCGCCTCCAGCCACGTGATCGGTAATC
CTGCTAATCTCACCCTCTCTAATTCTTCTTTAAAGCCTAAATTCTCAAGCATTGTTGTAG
GCAATGGTCAACACCTTCCCATCCATGCTACCGGCTCCACCACTCTTCCTCCCCATAACT
TTTAATTGTACAATGTTCCGTTCTCCCTTAATGTCACAACTAGCCTCATCTCAGTAGGCC
TATTTACTAAAGATAGTTGTTGTTCTATCAAATTTTACCCATTCGTTTTTCTTTTGAAGG
ACCTTTGCACCCGGAAAGTAATCCTGATCTCCGCTAGCACCAGCGACTTATACCCCTTCT
TTGGCAAGAACATACACCATCAACAGATAGGTTCATTCCCCAGGAACAGTTCGTGGCTTT
TCTATTTCTGAATAGTTGGCGGCTTTTCTATTTCTTCTCATGAAGTTTAGCACGATGGAT
CCCCTTTCTACCGAACAATGGCCAAGGAACGATGGATCCCCTTTTCTCACTTTTTACACG
AATTCTTAAGTATTTGTATCTCACTTGGATCTTTTCTCACTTATTACACAAGTCATGGAG
TCGTATACTGCTATCGTCATGGCTGAATAAGAAACCAGGATGTTCATGAAGTAGGCACCA
ACAGCAGGATTATCTCACAGAATATCAACTAATAAGTGGGAAAATATTGGCTTCAACAAA
ATGACAAAATGTCAACTATGGCAAGATTGTATAGAGAAACACCAGAGAATATCCTCAATT
AGAATTGGAAGCCAAAAGATTCATGTCCAGAGCACAACTCACGCAAGTCTAGGCAGTCAA
ATGCACATCAACTGCTATGGTAATAGGTGAACACCAATCAGCCACGCCTAAAACGGTAAA
CCACAGATAAACATCACAAAAATGTTGAACTTAAGCCAGATTTATAAGCAGAACTGACAG
GTAAACATTCAGCACACCATACATAATTATCAGGCTTGTGTTCCACGTGATGTGTGGCAG
GATCGATCATTTTCATTAGACACTCAAAAGAAGGTACTCAAATTCCCGCAGCTGAATGTA
ATATAACACAATCAGATGCAGCAAAGGAGCAGGTACAAACGTAACAAAAGCAATTCAAAG
AAGAAGAAAAAAACGAATTATTCCTGGCTTGGTGCGTCCTGAGAAACCTCCATACGGGCT
CTGCTGCATCTCCTTTCTTGCCTATTAAAAGATAAAAGAAGCTCTGTGAGTTCAAGGAAC
TTGAGACAGATGTAAACCAGTCTAGCTATCAGGAAAAGAACTCATGTATCAAGAACAGGC
AAACAGAGCAGCAACCAAGCAAACCTTTCTTTTTCTTGCCACCACCCTTATTCTTTGACT
TTGTGCCCAACGCAAGCCAAGTCGATGGATTTTGAGGACCTCCACATCCCCTCCTACTCC
TTCAGCGCTGGGGGGCTGATGTCGACCATGTGCGCGGGGAGGGCGGCGGGCACCCGGGGA
CGCGGCGGCCACTTCCCCACCATCACTCCCGCTCTTCCCAGAGCAGGTGCCGGCGCGGGG
AGCACCCAGCCAGCCGGCGCGAGGTTCGCGGTGCGATATTCAAGTCGCCGCGGCCAGCTC
ACCGCCTGCCCCGTCAACGACGAATGCCTCTGCCTCCTCGCCGCCACCACCACCGTCGCA
TCCACCCTGCACTCCATGAACGTTATGGTATCTGCCTATGTTACTATAACCTCCTCTCTT
CTTTAATTGTCTGCCACATCAGCATGTTTGCTAGTTCCAAGAACATGATACTACCTGAGT
TACTCTCACTATGGCCAGCCTAAGGCCGACATTATTAGCGTGCGTTCATGCACAGTGCTT
TAACTACTACTGACAGTAGAACCTGAGGCAATAATGCCTCATTTTTTAAATTATGACATC
CTCTTCCTCACGGAAAATTATATCGTTCAACACTGACAATATTATTATTTTTTCTGACAA
AATAATTTATATTTTATTGGCTAGAATCATAGTAAAAATATGATAATATAAAGAGGACTA
ATAAATCAAGACAAAGGTACATTACCAATTTGAGGGGCCGGACGAAATTCTAAACCCGCG
ACCGACGCCTGCTAGACACTCCTATGCCACACGCTCCTACCTCCTCCTCCATCGTCACCG
CTCCCTTGCTTCTTTATCCACATCCGCGTCAACCCCGCACCTGCCGCCCATTGATCTCTC
CTTACACACAGGTCACCGCCTGCGGCTCCTTCGCTCCGCCGCTGGCCGACACACGCCACC
GCCGGTCTCTCCTCACGCGCAGGTTAAGGCACTCGGGAAGAGCACGATGAAGGATTAGGT
GAAGGACATGATGACGGCGACTATGGAGACAAAGACGACCTTCTCCGGGCTAGGCAACTG
CAAGAGGGCGACCTCGGCGAGGTCAAACAACAACATGTACAACGTTCATCCTGACAGAAT
GTAGAATCCTCCTCTGGTCCATCAGCAGCAGCAGTCGTCCCCTTGAAGTAAGGATTCTCT
GTTGCCATACGTAATAATCTTTTCTCTTTCCTTACAGCTTCTTTGCTATGATGATCATCC
ATGGTAGCTGGCCCAATTTTCGGAGGAACGTAGATACCATCTTTGCCCTGAAGTCAAACA
ACTAAACACATCAGACACAACAAATCTGCACAAATTGAACTCTGGCCATGAAATGATCAT
TAGTGACGTACTCCCTTTGTTCCTAAATATATGTCTTTTTAAACATTTCAATAGGGGACT
ATATACGAAGGAAAATGAATGAATCTATACTCTAAAATATGTCTATATACATCCGTTTGT
TGTCCAATAGTGAAATCTCCATAAAGACTTATATTTAGGAATGGAGGGAGTAAAACAGAG
CGACCTATATTCATGTTATTAATTGGAATATTGCAGTTAGAAGTATATATACCCCAAACC
TTGTGTAAGAATAAGGCAGCATTTAAGCAAAAGCCAGCAGTATCCACAAAAGCAACAATA
TAAGCTATGGTACAGTTCACTTAAAACGGGGCATATAAACCGAGTTGTAAAGTACCAACT
TAATTTGATTCTACAAGACATTGCACCAGAAATATTGATTTCTCATCCAACTGACAACTA
TATTACAGAAAACAGCTCAAGTAAGGATGGGTAGATTTAATGTCGTAAAACTACATACAA
AATTTATTGATTGATGTTTGGGCTAAAGAAGCTGGTAAATTCAATGCACAACTTTTGATG
GTAACTCACTGGTGTGTGTGGCTCTGTGTGAACACAGAGTGGCAAACAGTGTCTGGCACC
TTATCCTGGGCAGCTGCACCATCTGCAGGTGAGCTTCTGGATCTGGTACTCCATCTTCTT
GTCTATCGGGCGAATCTAGCACACATAATTCAACATAACACCATCTACTATCAGATAGAC
AGACGCGTAAATGGAGACTGCCAGCTTAAGAATCAACACTTAAGGGCACACACGCACACC
TTCTCAAGAAACAGCCTGATCTTGACAAGGCTGCGCACAACGGGGTGGCCGTCAACGGAC
AGCCCCTTGGCCTTGCGTAGCAGGTAGTAGACGAGGTCCTGGCAGTAGCTCAGCAGCAGG
TGGTGCTTTGCCTCCAGGTACCCAATGCCATCGCCTGTCAGCAGCTGCTTCTTCCTAACC
TACACCACAGAGAAAAATGAACAGAATTGTCAGTTTTTGCCACCCACCTGAAAGCTAAAC
ATTATGAGTGGATGGAATACATGTCTAAGTTGACTTGATTGATTTGCGAGAACATATATG
ATGGAAACCACATATTCAGTGGAAACACGGAAACTTGATCATGTGCCGTTGGATGAGGAT
TGTGCGATGTGAGATGAAAAGGTGGACGAAATGCAAAAAGAACCTTGTAATCTTCCTGTA
CCTCGGTACAACATCCTGGATGGAAGATGAGCCATCTGTGCCTTTTCCTATGCCTTTCCC
TAGGTCTGAAGGTATGAAGATTTCTATTACATTGTTCATCTTCTATGCTTTGCCATGTTC
TTCTTTTTGTAGCTCATCTAGCAGTTTCATCTCTTTGAGTTGGAATAGGTTTGCAAAACA
AATAGAGATGACAAGGGCGTGGATTCTGGTTGTCTCCTCCAAGATTAGCACTTCTAGTTG
GGTTAGGATTGCAAAGCCAAGCAAATAGAGTAGGGGAGGGAACGAGGTAGTAGTATCTTG
CTGATTGCCCCTAAGTCGACTTTCCAGGTTTTGATCTTCAAGAAGTTGGTACAGTCTAAT
TCATTTGGTAAGCAAGTTTTACATTAACACAGCAACAGGGAGATCCTATCATGCTAATTT
GACAATACTGTACACCATAATTTGCGGATTTGAAGGCAGCCAAGGATTTCTATGAAGCTT
ATGCACATCATGTTGGTTTCTCAGTACGTGTGGGACAACGCAAGACTAACAATGGTGTCA
TTACTCACAAGCATTTCTACTGTGATCGTGAAGGTTTCCGTGAAGAGCGGAAAGGTAAGG
AAAACTTGTTACTTGGCACTGGCAGTAAGAGGAAATATGAGAGAAAAATCACTAGATGTG
GGTATGAGGCTAAACTTGCGGTCAAGCGCGGTTGAGAACAGGTACATTGTGACTCTTTTC
GAACAGGAGCACACACACACACTTGTATCATCTAGTAATTAGATCGAACAGGAAAGTTAG
CAAACAAGCAAAAACTACATTATGGAACTTCCATAGAGCTAGCATTGGCACATCCCTAGC
ATACAGGTTCCTTCGTGTAGGCTTGGGAGGGTTTGAGAATATTGGCTGTACGAAGAGGGA
CTTGCAGAATTACCACCGAAACCTTAGGTGCCTCATCAAGTCATCAGATGCTCAAATGTT
CGTAGACCAGCTTGCTAGAAAACATCTTGCAAATTCAGGATTTTATTTTGATTGTGTTCT
TGATGATAAGGGTAGGCTGGTACATGTGTTCTGGGCGGATGCCACATGTAGGAAAAATTA
TGCTCTATTTGGAGAGCTTGTGTCCTTTGACTCGACGTACAGCACCAATCAATATAACGT
GATATTCACCCCCTTTACTGGAATCAATCACCATAAGGCAAGTGTTTGTTCTGGTGCTGC
AATGTTACACGATGAGAAGGCCGATTCCTATAAGTGGTTGTTTCGCACATTCTTGAAAGC
TATGGGTGGGGCTGCACATAGGTTTATAATAACTGATGGATGCAGTAGCATGGACAATGC
AATAAGGGAAGTTTTCCCAGCCGCCGCACATAGGCTATGCATGTGGCATATTATGAATAA
GATTCCGCAGAAGGTTGGCCCTGATTTAAAGACCGATGAGGATTTCCATGAACGATTAGG
TCGGTGTGTGTGGTCTTCTGAAACTCCTACTGAATTTGAGGAATGATGGAAAGAAATTAT
GTCAGAGTATGGGTTGGAAGATGATGATTGGTTCAGTAAAAGGTTCAGCATTCGAGAATC
ATGGATACCAGCTCACTCCAAAGAAATAGCTTTGTCAGGGCTTATGAGGACCACTTCAAG
GTCAGAGAGTGCCAATTCTTTTTTCTCCCGAATTATTGGTTACAAACATGCTTTGGTTGA
GTTTTGCCTTAGATTTGACATGGCTTTGGAAGATCAGCGTCATAAGGAGTTGCAAGAGGA
CCATATGAGCCTACATACGATGCATGTGTTGAAGACATCGTGGGCGATTGAAAAGCATGG
CGCTGAGGTTTTCATGCATGAGATATTTCAGGATTTTCAACATGAGTTGCTTGCTGATAG
GGATCATTGCCTTGTTGAGATGATGGCACATGATGGTGAGGTTAAAACAGTTACTATACG
TGATGGTTATAAGAAACTAAGGGTGGTAACTTACAACACAACAACCTCAACTTACTATAC
GTGATGGTTTCAAGATATTTTAGTTTTTTGGAAACCGTAGTGATGGAGTGTGGAGCTGCC
TGCTAGGTTTTCTTGTGCCAATGAAACTGCCACTAGCTTTTTGTTAACCTCAAGTTAGTT
GTTAACCTCGTTGTTGCTTGTTGCTTCCCCCCTCGCATATTATTGATGTGTGGGCTTCAT
GGGGGTTCAAGATGATTACGCGCCGAATAATGTAATAGGTATTAAGACAAGCTTAAAAAG
AAGGCCACCACATTATTCTTTCTAGCAACATAAGGATGAGCACTTCCACCTCACTGCTTA
CCGTTCTGCCTATTACATTACAGAATGAACTGATTTTTATATCTAGGGCCAACTGGGTTT
TCTTTTCATTTTGTTCATGAATATTTTTCCGTAGAGTATGATGGTGCAGCCAAGGAAAAG
GGTAAGGAGTAAAAGATGGGGGTGACCTTGATTAGCGGACGACGGCGGTGAGGAAAGGTG
GCCTTGATTAGTGGAGCGGCGTCCGAGAATTTGTCCGGGCCGGCCTTCTCCTTGGCTGCT
ACAGAAAGAAGCCGCCTCGGAGATGGTCGCCGGGACGCCGAGCCGCTAGGGAAGCGCAGC
CGGAGAGGGAGTCAACGGCCTTTGGTGGCTCGCGTCGGCGGATCCGGCATCGCCACCACC
GGATCAAGCCGGAATTACTCCTCCGTCAGGATCCGGCATCGCCACCATCGGATCAAGCCG
GAATTACTCCTCCGTCGACAAAAAATCAATCTTTTCCAAGGGAAGCACGGGACGGGGACG
GGGACGGCGGAGTTTTGAGAAGCGGACGGGGGCTGCGGCGAGGAGATAAGGAATCGGGGG
AGGACATCGCAACGCGACGA