morexGenes - Barley RNA-seq Database

Contig contig_40146
Source Contig contig_40146
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40146 (9118 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_40146

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55643	1	2527 bp	AK251848.1	Available	Available	None
MLOC_55642	1	130 bp	None	Available	Available	None
MLOC_55641	3	2159 bp	MLOC_55641.3	Available	Available	LOC_Os09g28060.1, FRAME:+1, EVALUE:5e-145, 13109.m02764 protein MORN repeat domain containing protein, expressed
CDS Structure of MLOC_55643

CDS Structure of MLOC_55642

CDS Structure of MLOC_55641

Contig Sequence (9118 bp)

>contig_40146 9118 assembly3_WGSMorex_rbca.fasta
CTGCGGATGCGCCGCTCCCCGCAGACAGGCTCCGTGCAGTGGTTCATCGGCGACGACGAC
GACAAGCCGCACCACGCCCGGGACACCAGGGGCAAGGCCGCCGCCGCGCACGGCCGCGTC
GTGCGGGAGGGCGTCGAGTTCTACAGCAATGGGGACTGCTACGAGGGTGAGTTCCACAAG
GGCCGCTGCAACGGCAGCGGCGTCTACAACTTCTTCGGCAAGGGCAAGTACGAGGGCGAC
TGGGTTGACGGCAAGTACGACGGCTACGGCATCGAGAGCTGGGCGCGCGGCAGCCGCTAC
CGCGGCCAGTACCGCCAGGGCCTCCGCCACGGCCACGGGGTGTACCGATTCTACAGCGGC
GACTGCTACGCGGGCGAGTGGGCCGGCGGCCAGAGCCACGGCATCGGCGCGCAGACCTGC
TCGGACGGGAGCTCCTATGTAGGGGAGTTCAAGTGCGGCGTCAAGCACGGCCTTGGCAGC
TACCATTTCCGGTGAGCATATTGCCAAATTCCCTGCTTTGATTTGGTCACGCCACTGTTT
CCATATCTCAGCAACTGTTCGATTGCTTCATTAATACTAACCCCAACCACCTTATTATAT
ATCTTCATCTTCATCATCACAGTAATAGTTCAAGCAACATCGGTGAGAAATTCCTAGTAA
TTTCTGACGTTCTGTTGCAATTTGTTTCAGAAATGGCGATCGCTTCGCCGGGGAGTACTT
TGGGGACAAGATCCATGGGTTTGGGGTCTACCGCTTTGCCAATGGCCATTGCTACGAAGG
CTCCTGGCATGAAGGCAAGAAGCAGGGATTCGGAATGTACACCTTTCGGAATGGCGACAA
GCGATCGGGGGAGTGGGACTTTGGGACTCTCAAGAGCCCCCTGCCTCCCACCGATCCTTC
CGTTGAGCGTGCCGTGCAGGTATTAAACCGATTTGCTTACACATAAAATCGCCCCCTAGG
AGTCTTTACCTCTGCAAATCCTTGTGGAATTCTAATGGTTCCATTGTATGATCAGGCTGC
ACAACGGGCCGCGGAGAACGCCTTCCACCTGCCGAGAGTCGATGAGCAGGTGCACAAGGT
GGTCATGGCCGCGAACAGGGCAGCCACGGCGGCCAGGGTGGCGGCGATCAAGGCAGTCCA
GAACAGGATGGACGGGAAATTCTGCGATACCTATGTGTGAAGAGCGTGTGTGTTGAAGAA
AACATGCCCCTTTCTTCTAACTGTACATTAGGGTAGTGGAGGACAATAACACTAATCGGT
GAGAGTTTCAGACGACGACGACGACGAAGACGACCGGGGCGGCACAACCGCTTGCTCCGA
GTCAGAGAGAGATCTGATCGGATCAGCAACAAAGAGGGAGCCTCCGAGGAGGAGCGGAGC
TGACAAGTTTTGCATTTCAAAAACAGCTCAGATTCTGCGACGATCGCGATCGCGATCGAT
CGGTGGTCCCTTTCTTTCCCCCCTTCCAGCAAGCTGTAAATTGTACATAGATCCAAGTGT
ATCAATGGAAGAGCTGATTGATCATTTCCAGCTGATGAGTCTTTCCCTTCCTAGTTCATG
CCACTTGCTGCATATCCTAAGTAGAGCAAGTTCCTCTGTGTGCATTGCACTTGCACATAC
CACGAATGTGCTTGCACCTGCAACATTTTCATCGCACCGATCTGAATCTTGACTGTGCCT
GGGGTTGGACACCATGTGCAGTGATTCCCCATTTTGCAACGGTAGTAGTACAAGGAGGAG
ATGCACATGGGGGATTGTGAATAATTTCCTCCGGTCCTGCAACTTGTTATTAGCTTTGAT
AATGTTGGCCCCTACTATGATAGTTAGTAGCAGTATTATATTTCCAGTACCATTTGCTGT
CTATCCATTCCCCGCATCTGAGCCCCACCGTGTTGATTCAAAACCAGCAGCGATTCATAG
CCTTTGGGTCCCCGTTGCTGCCCCAGATTTTCCCACCAGAAACATGAATGCAGGGGGAAG
AAAAGAATCATGCAAATGTTAGGCTGTCACGATTCGCGCTGCTGTGTGCCCGGGGGGGGA
AGTGCTGTTGCTATATCCTATCCACATCCATTTTCTGGATCAGGACAATCATACTACCAA
CCAACCAATGATCCCGCTGCATTATGTTGCATGCATATGCTTATATTCCATAATGTCAGA
AATCCCAATTATTCTGAATGTTTCGTGGCCGCTCTTATCTCCGCGCCGCTCTTGGCTCTC
CTTCACGTTAGCATCCATTGGGAACATGTTGTTGCTGCGCCCTAGTAGAATCCTATAAAC
ATGTCATGGTCTAAATAGTTGCTGATAGTGGCCTCAAGTACAGACCAAGCAGAGCTGATC
TCGGGGCTTGTGATAGTACTTAATAGTAGCCCCTACATTGTCCTAGACAAAACCTGCTTA
GCTTACGTAGGAGCATGAATTGACTTAACCATCCAATCCAAGGCCCAACGCTGGATTCCT
CATCTCAAGGCGCCTCTGCCATCCACTGTTTCTTTCTCTCAGTCACTGGCTTGCCATGCC
TTCCTCCACTGTGTGGTGCCAGTGTGTGCATGCATGGCAAGAGCTCCTGTTCTTCTTCTC
TCTACAGCAGGATCAAAAACGTGGGCGGGAAGAACCAACGGCGGCCGGCAGCTTCTCCTG
TTTCTGCCTCCGTTTGAACGAAAAGCAGGAGGAGCCAACTTGCGCTTTTCATTGCAACGT
CTTTTCCCCTTTTGCGCAGATGCAGCAGGGGTCTATAGACATGATGATTATCGGCCTCGC
ACAAAGGCTAATTGCAAACCCGGCATGACCCTAACGCATCGCTAATTATATACAGTATAT
AATCTGCTCGCTTATTCTATGCTCAGGGCTTCAATCATACCAGCGACGTGCCTAAAAACT
AAGAGGAGCGTCTGTTCATGATATGATTGTTGTGTTTTGTTTTGATGCTTGATGAAACCA
ATTTTCCCTTGACTTGTTCGTCCGTTTTGGAACATGGAGAAATTCCTCTAAGAAAGAACG
TAGCACTATTATTCTCTTAATAAAATTAAGAAATTGGATAATTCATCCAGATGAACGGGC
CCTTCTTCAAGTGTGAAGGAAGTCAACCCACGCCTGCTGGCCTGTGATTTCATGATGCTC
GCTTGCGTGAGAAGCGAGGTCGTATATATGGCCCGCAATGGTAGTAATGACCCATTCTTC
CCTTTTGGAGTAGTACAATTTGCCTTCCTTCTTTTCTTTGTTTAATTTAATTTATTTAAT
TCACCGCCTAATAGTAGTAATGAACATCTTCTTTCTCCCCACGGTTCCGTTCAACTTCAA
AGAATGCGTCGCTGCCAACAAACATTGCTTTCGGTAGCCATCATGTGACCAGGTACCCGA
TCCATCCATCGTTTTGTTATTAGCAACAAATAATATAACTATTTTTCCCATGACGCAACA
TCGGTCATGGGCTACTCCTACTACGATACAATGCGGACCATTAGAAAAAGAAGATTGGAA
AAGATGGCGCCGCGGTGTGAGCTCCGACAAATAGTAAACAGGAGCTGCGCCAGCGCCACG
GTAGCCGGCCGTGGAAAGGATCGCCCGCCTTGTATTTTCCGCTCGTCGCCTGCGCTCAAA
ACGCATGCAAACGCAAACCACTTCACAGGAAAAACATTAGTAATAAGAACGCAGACACAC
TTTTCTTTCTTTTTTTTTGCCATCTTACGTAGAGTTTTTCCTCTTTTTTTTTGCCATCTA
GAGTACTGGCACAGTGGTATTTTTCCTTTGTCCCTTGAAGAGGAAAGCCTCCCATCCCAG
CAAACAAAGAGGCGACGTGTAGCTTTCCCCTCCTGCTCCTCTTGGTGCATCACACGCCTC
CTCCTCATGGAGCAGGTGATGGACGGCCCAAGCGGAATCGCCACATTGGCGGTACGTTTT
TCTTCTTTCTATACTTGCTTTCCTTTCTCCTAGTTATAAACAACAACATTTTTCCCATTT
TTCGTCAAAGCGTGTCGTGTGGACAAGGCTCGGGAAAAAAGAAGGAGAAGAACGTATAAT
GGATTTGGTCTGCCCGCTCACCCGTTTGAACTTTGAACGGATGAACTGAACACTCTCCTT
GTCAAAGGCGGTGACGCCGCGGGTTGGACCTGCATACGCATGGACGATCATGGAGTGCAT
GCGTTTTTCTTGGTGGTGCTTTGGTTCAGTCTTCAGCTCGGCGTAGCAGGGCAGCGCGCC
CATTGCCATGGGTCTCGTCGGGTGGGTGGGTGGTGGTGGACTGGTGGTGTTGGTGGGTGG
TGGATCAGAGGAGCCAGGTAACACGGGGCTTTGGCGGGCGGGATGAGAATTGAGAAATGG
CCGGCAGTGAGGCGATTGAAAAACGACCCGACCCGCGCAGTGAGCACATCCGAGCTCCTT
GGGCGGCCCTTTTGACTGTTGACACCGAGGGGAGGGGGCCGGGATTCGGGCGACTCTGTT
GGTTGTTTGACGCACACAAGAGTTTGATGAGGTCAGAGCATAGGCTTTTCATTTCGCTTC
ATGCTTTCCCAAGTCAAACCATGCGAGTAAATGTACGTGGTTGGCGGTTGCAACGTGCGT
CAGGTTACGGTTAGGATTTATGTATGAATGAACAGTACATAACAACGGACACGTACTAGC
GTTTGTATGACTGCTAGTCTGCTACCCATGCTAGAGTAGTAGGAGTAGTTGTGTGTCACA
CAGTGAAGTAATATTCCTGCTACCGTGATTGTTTGCTTGGTTGCAACGGTAATGGTGTGT
ACGTAGTAGTACTACTTAGCAGTACCGGCATCCGATGTCCTTGGGTTTGGAAGTAATTAC
TCCAGCATCCGATGGGAGTAAACAGAAGAATACAAAAAAGTTGTACACCGCCGTAGTAGA
TACTACTAGTAGTAGCACGGTACTGTACTAAGCACCTGCTATCAACCATAAACAAGCACT
CCACCGTACAAGCTCGTACTACTCCTCCTCCTTGGCGTAGAGATTCATTACCAATCATAC
CAGCAGGATGGCCGGTCACTGCATCTCGCTCGATGCAGAGACCGCTCGGGAACCGCACTA
TCGAGAGACCTGACATGTGCGGGAAATGAGACGTTGGAAACTCACTCCACTCTCCATGTC
GGCAACGGCAAACCAGCGGAGGCGCCAATCACCCATCATAGTCTGTTCGCCAAATGAAAA
AAGAAACCATCATCGTCGTCGTTGCAAAACAGACACAGAGAGACAGGCCTCGCGTGACAG
CCATATGCAAACCATGCTGGTAGCCCACGACAGCCGGTGTAAACTACGATTTCGATCTTG
TCCGTTACCACCCCCCCGTAACAAATATCGACGGGACAGTGCCGTTGACGAGAGCCCGGC
CATTTGTTTATATCTGTAATCTCTCAGCGGTGTGTGTGTGTGTGTTGTTTGTGTGTGCGA
TTATTCGTGCCGCAACATGCTGACGGCGCAAAGGCGTGGGATAATGTATTTTTTGCGTCC
GTCGCATCAGCCGCTGTCGCTGTCGTCTGTGGCGGGAGAGAGAGAAGAGAGAGAACGATC
GGGGAAGCAAACGGCAATCAACAACATGTCATGGCGTGGCGCCACATGCCGCCGTGCCAT
GGCGGCGTGTGTGTGTGAACCCGGGCAACGGATTGGCATCGGGAGAAAAACGGCCGAGCG
CCTGGTGCGCCACGCCTCGCCCCGTATGACCGGCTGCCGCGACCCGTTCTTATCGTCGTT
TTCATGGATTCGTTTCCCAGCCAACCGTCGTCCCTGGTCGCTGGGCAGGTGCTGTGTGGC
GCTGGGTAACTGCGATGGTAACGGCAGGGCTGGGTGCCAGAGTTCTCATGGCGCACACGA
GGAACAACAGCCCATGGGTGATCTTACATCTTCACCGGACATATATGTGGTCGTGGAGCG
CGACGGAGCGCCGTGCACACGAGGGTTCGCGGCTACGGGTTTCGCGAATCGCATCGGGTT
GTAGATGGCGCCGTGTGTGGAGTCGGAGTGGACGACGTTTTTGTCTCGACAAGCCGTGCG
TGTAACAATCTCTGACTGTGACGTGACACCAGGGAAGGGAAGCCAGTGTTGGTCGCCCAC
GTAAAAGGATGCGGCTTTGTCACATTTATTTGGCCCTCCATGATAGGGTTGAAGCTTTGG
TACATCAATTATACTACTCCCTCCGTTTCTAAATNTAAGTCTTTTAAGCGATTTTATTAA
AGGACTACATACAAAGCAAAATGAATGAATCTATCATCTAAAGTATGTCTATATACATCT
ACAAGACTTATATTATGGAACGGAGGGAGTACGTAGAAGGTAGACTAAGAATTTCACAAG
TGCATGTTTTTCTCTTGTGCTACAAATCAAGCACTCTGATGTGATCACTTTGATTGATGG
AGCGATGACAGGACGCGGGTGAAAAAGGCTCGAGCAAATAGCAGCCGCAGTTTTGCTCCG
CACAGGTTTCGTACCGTCAGCTTTACCCGGAGCCATCACCATCGCCTTACACGTTCAAAA
TAGCAACGACGAAAGAGATCAAAGTCACAGACAGGAGATATAGTAGATAACTGCTGCTAG
AAAAAAGTGTTACATGCATCGCACCGGAATGCAGATCAGATCAGATCGAGCAGGTCTTTA
TTCACCAAACAATCATCAACGGCTACACGGAAATCGCCCCCTCAATCATTTGCACGGAAA
TCGCCCCCTCAATCATTTCTTCCTGAGCTTGGCCTTCATCCGGTCCACCGCCGCCCTCAG
CGTGTCGTCGTCCTTGCAGAAGGTGAACCTCACCAGGTTCTTCCCGTCCTCCGGGTTCAG
GTAGAACACGCTCGGCGGGATGGCCACGACGCCGACCTCGCGGATCAAGTACTCGCAGAA
CTCGACGTCGTTGTCGAACCCGAACGGGGTGTGGTCGACCATGACGAAGTAGGTCCCGCT
CGAAGGGTAGACGATGAAGCCCGCCGCCTTGAGCCCGTCCACCAGCAGCGCTTTCTTTGC
GCCGTAGTCCCTCTTCAGCTCCTCAAAGTAGCTGTCCGGTGCTCTCAAGGCCGCCGCTGC
TGCTGATTGCATCGGCGTGGAGGTGGCGAATGTGAGGAAGGAGTGTGCCTGCCTTACGCC
CCATGTCAGGTGCGGTGGTGCTATCGCCCAGCCGATCTTCCATCCGGTCAAGGAGAACGT
CTTCCCCAGGGAGTTCATAGTGACGGTCCTCTCATACATGCCAGGAATAGAAGCCATTGA
TATGTGATCCGCCTCAAACGCCAGCTTGTCGTAGACCTCATCGGCAAAGAGCAACACGTC
ATTTTCCTTGCAGAGATCAGCAATGAACTCAAGTTCCTCCCTTGTGAACATTTTCCCGGT
AGGGTTGTGAGGTGTATTAATCATTATTGCTCTGGTATTCTTCGAGACTGCAGCCTTTAG
CTCTTCAAGAGGGACTGCAAAGTCCGGAGGGCGAAGTGTAATGGCTTTGACATTCGCACC
AGCCATGGACAGTGTAGCCTCATAAGAATCATAGAATGGAGCAAACAGTATGACTTCATC
CCCAGGGTTGATCAGACCCAATATTGTTGCAGCTATTGCTTCTGTGCACCCAGATGTAAC
AGTAACTTCCTTATCAGGATCGATGTGCAATCCACTGTCCTTGAGAAATCTCTCAGCAAC
AGCTGAATTCAATTCAGGCACACCATATCCTCTTGCATACTGATTCTTTCCAGCTTTGAT
AGCCTCAATAGCAGCATCTTTGACAAAGTCAGGGCCATCAAAATTGGGAAACCCCTGTCC
AAGGTTTATTGCTCCATGCTTCACTGCGAGCATGCTCATCTGTGTGAAAATTGTTGTTTT
GAACTTCTCCAATCGCTTAGCCACCTGCAATACATAAGAGATTAAATCACAAGCTCAAGT
TTATATACTATGACGGGAAGTACAATTCTAACTCGTTTAAGAATGGATGTGAACACAAGA
AAAACCTATATCACCCAAAAGAAAACTAGAATACATCGACGCAAAATTTATGTTTAATCC
TATTATCATAGAAGTTACAGAAGAATCCCTAGACATCTGGTTCATGCCAGTTGAACTTTA
ACAATATTTTACTAAGCATGAAAGTTATGCACCGTGTTGTACACATAATATGTTTGTAAA
TTTGTCAGGTTTTACAGTTTTGACTGTTGATTTGACATTACAGACGGTCATGCCTTGGCA
AAATCCAAGGCTCTAAACAACAGTTTGGCTGACAATTTGTCTGCCCAACCTGTCTAGTCA
TCTATTTTGGGGCACCCTGACTCCACAAGCATACATAATAAAAATGTATGTTATCAAAAT
GATCAAACCCCTCCAAACTCTGCAAAACAAAACAAAAATCGAGCAACCGGCAGGAGCTCT
ACCTTTCCATATAGAAGAAGAGAGTTGACCAGTTAATAAGGAAAACTGGCCAAACTCTGC
AATTGGGTGTAAAATATGTTCCTTGACTTTCCCTAACCGACATACTATACCTGGTGTCAT
GGTATGGCTGGCAATACCATGAAAAAGAAAACCTAGATACGTTATGCTGGGTTCTGTCCA
TGATGAAGTAGGACAGTCACAAAAGTGGCACCGATGTTCTTTGTCATGCACCCATGCCTA
CATTTCAAAGATTTTTAGTCCTAGATTATACAATATTGTGATTGCCCTTTCAATCTTCCA
ATATGGCTTTCAGATAAGTGTGTATTTTCAATTTCCCCACGATAAAGGGTGTATTTTACT
TCACATTCGTAGGCACAAATTTGGTAGGAACTAGACAGGTATGGTCAGAAGAAGCAAGGA
AGTAGTAGTTGATGAGTAATAATGGGACTGACCAGCAAGATGGGAATTTGTGATATTTTG
GATGGTCTATTTTGCCATTTTCTTATATGTTAATAAAACCAATAAGAAACGACGAACAAT
TTACATGTATGGTAAGGTTTTCTTCCTTTCTCCTAAGTTTGTTTTGTTTCCTTTCTGATG
TATGATGTATATAATTTCTGGAAGAAACCCCAAGGGGCTATGTTCTGCAGCATAAGTCGT
AAAATTCAGATTGTGCTAGCAAAACCAACTTCCTATCTACCTATAATTCAGTGTAGTAGT
TCTTTTGACTAATGGCATGAGAAACTGCAACCACGCTAAAATGAAGCCCCCCCCCCCC