morexGenes - Barley RNA-seq Database

Contig contig_40142
Source Contig contig_40142
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40142 (7689 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_40142

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55637	1	917 bp	AK359472	Available	Available	None
MLOC_55636	5	5054 bp	None	Available	Available	None
CDS Structure of MLOC_55637

CDS Structure of MLOC_55636

Contig Sequence (7689 bp)

>contig_40142 7689 assembly3_WGSMorex_rbca.fasta
GTCGCATCTTGGGCGTGACAGGTATCTACCTATGTTACTCTAACTCTCTCTCTTCTTTAA
TTGTNNNNNNNNNNNNNNNNTTTGCTAGTCCCAAGTACATGATAATACCTTAGTTACTCC
CACTATGGCCAGCCTTACTCATCTTGCCTAAGTAACATGCTTACTCAATTTCTCTTTCTT
CTCATTAATTAGTTGACACGTCATATTTCTTGCTTAGATCACATCTATGTTACTCCCATT
AGGCTGGTCATAGTGGGGAGTATCACATAGTAGTATCATGCATATGATACTACCTTCATA
GTGCATAGTATCATAAACTAGTATCATATATTACCTTATTTATTAACATGCATTTAACAT
GTTACGGTATCTACCTATGTTACTCTAACCTCCTCTTTTTTCTTTAATTATCTATCACAT
CAGCATGTTTGCTAGTCTCAAGTACATGATACTATCTAAGTTACTCCCACTATGGCCAGC
CTTATGGGTAATGTACTAGCGGCTCTGAGCAGTCTTGGACTTGGCGCCGTATTTTTTGGA
CAATCTGATTTGTTAACATAAACTTGTTGCCGTCTCATTCCTAATACCCCATAATGTGCA
AAATCTTTCTTGACACCAATGTAGGCCATCCGAACGGCAACTTGTAAATTTTTTTGCGCA
TCCGCCTATAAACTGGGGGGTCAGTTCGTGGATACGGATATGTGAGGGCACCATCCAACG
ATAGCCGTACATATTTTAACAATAACTCGAACCAACCGGAGGAAGTTCTACATATCGGCC
GGCTTTCATGCAAACATGACGGATTTTATAGGAACACAACATATTTCATTACATTTCAAA
CATTATTAGCTGAAAAGGTAAGACTATGTGCAGGTACGGTCGCACGGAGCTCCATTCCCA
CAACCCGGATACACTACTACACTGGTCTATGGCCAGTCGCGGCGGATCCCTTTATCTTTT
CCATGTCTAACAGCCTGTACATCGGACTGTCAGAAGCCTTGGAGGCATATGCTTCAGCGT
AAAGAATGCCTCGCTTCCCCACCGCTCGTCGGAGCGGAACCCAGTTCGATGCTTTAGCGG
GAGGGGAAGAGGGCACCTCAGCTTCCGTGAAACCCATGCGGGGTCGATGGAGGTCCTCGC
AAGAGATGAACTGGACAAGACACCGGTTGTGTAGGCCGGCGTCGCCTCGGTGGTGGCCTT
CATGAGACCCAAGCTGTGGTGGCCTTCTGTGTTCTACTTCTCATCGACGGTAGCGGCCGA
CACGGACGCGCGGGCCACCGATTCCTCACTCTTCGTGCAACCGGCTTCTTTTCATGCCTG
CATGGCGCGGCTCGCATGCATCGACTGCGGATGGCGCCGTCGCAGGCACGAGAGGCGACG
TCGCCGTCGTGCTCCATGTCGTGCCGACGTGGAGCAACTTGTCACTCCTCATCGAACTGG
CTTGGAGTGGCGAGTTGCTGAACCACACGACGGTTTGAGAAGGCAACTTGCTCCATCTGG
CTAGACAAGGGAGGTGAGGAAGGCGGAGGAGCGAGCTACCTGGCTTGTGCTCGTATCCAC
CGAGTTCGGGGGGGCATCGCTACCTCGCTTGTGCTCGTATCCGCCGAGTTCGGGGGGGCA
TCCATCTGTCTTGTATGCCGGAGAACTACTCTTTGAAGCCCATCAGAAAAGTGGAGAAAA
TGGTGGATGAAGAGATTGAAGAGCGACAGAGAAATGCGATCCTTACCCAACGTCTGGCCT
TGTTCAAATAAAGGGTGGACGGAAAGAGCTCGACGATTGGTTATCTCCTTTTGCATTTGG
AACATAGATGTGTGCTCTTTTTATCGGAAAATATTCTCTATCCACTTTTACATACATGTA
GTTCTTGTTTTACACTAATTTAGATTTATAAAAATATGTGGTATATGTCATACAAATTAT
ATATCTTAACGTTTTATTTAAAAACAATACGACCGTGGTTATTTTTTCCTTTTTGAATAT
CAACGACCGTGGTTATATATCCAGTACGCTAGCGCACCATGCATCTCTCCTCTCCCATGT
AAAGCTGGCGAGTTTGGCAACATGCGAATGATCGCAGAAATCTCTACGATGTGAAGTGCA
CGTGATTGAATAAATGTACTTTCTCACTATGAGCCATTTGGTACAGGCTGTGGAGCGGTC
GTTGGCCGCATCTTTTCACAAGAAAACACAAGAAGAAAATGACGGGCCGTTGGCGAGAAA
CAAGAGCTCCAAAGACCCTGCGCAGGCTCTACCGCGCCGGCCGTTCCGATTCGTAACCGC
GGGCCAATCAGGCGGCGCCACGTACGTACGAACCGGCTAGTATATCGCCTCGCATCTCGT
CAGATTCGTCAACTCTCGACTCTACCTGTGTGGACTCTGGACTAGCGGATCGACGTCGTC
TCGTCAACGATATGGCGCCCTCGCACCGCGGCGGCCAGCCCCAGCCCTTCGGCCTCGCGG
CGTCGCCCGAGCTCGACGACGACGGCCGCGTCGCCCGGACGGGGAACCTGTGGACGTGCG
TGGCGCACATCATCACCGGCGTCATCGGGGCCGGCGTGCTCGCGCTCTCATGGAGCGTCG
CGCAGCTCGGCTGGGTGGCCGGCCCCGTCGCCATGGTCTGCTTCGCCGCCGTCACCTACG
TCTCCGCCGTCCTCCTCTCCCACTGCTACCGGTCCCCCGCCCCCGCCGAAGCCGGCGCCG
GCGGCCTGGAAGAGCAGGCGTCGCCGTCGCCGTCGCTGGGCAAGACGCGGCGGAACTACA
CCTACATGGGCGCCGTCCGGGCGCTCCTCGGCAGGAAGCACACCTACGTCTGCGGCTCCC
TCCAGTACCTATACCTCTACGGGATCGGCGTCGCCTACACCATCACCACCGCCACCTGCA
TCGGGTAAAGACTTGAGAAACCATTATTAATTGTTCCGTCGACCCATGGATTTGTCCCTC
CCTCCCTCGTCGTCGTTGACGGGATCGTGGTGGCCGGCAGCGCGATCAAGAAGGCCAACT
GCTACCACGACCACGGGCGCGGCGCCGCCCGCTGCACCTCGGACGACCAGGAGCAGCACC
TGTTCATGCTGCTCTTCGGGGTCGCGCAGCTGGTGCTCTCCTTCATCCCCAACTTCCACA
GCATGGCGTGGCTCTCCGTCGTGGCCGCAGTCATGTCCTTCACCTACTCCACCATCGGCC
TCGGCCTCGGCCTCTCCAAGACCATAGGTATATACATACCACATTAGTCAGAGAGAATAA
TTCTGAACCTGACACTGAAACTCAAACTCTGCTGCTCAGGCGACGGCGTGGTCCGAGGGA
GCGTCGCCGGCGTGCCGATGCACACGCCGATGCAGAAGGTCTGGCGGGTGTCGCAGGCCA
TCGGCGACATCGCGTTCGCGTACCCGTACTCCATCGTGCTGCTGGAGATACAGGACACGC
TGCGGTCGTCGCCGCCTGAGGGGGAGACGCTTCGGAAGGGGAACGTGATGGCGATGCTGG
CCACCACCTTCTTCTACCTCTGCGTGGGCTGCTTCGGCTACGCGGCCTTCGGCAACGCGG
CGACGCCGGGGAACTTGCTCACCGGCTTCGGTTTCTACGAGCCATACTGGCTCGTCGACT
TCGCCAACGCCTGCATCGTGCTCCACATCCTCGGCGGCTACCAGTTCTTCAGCCAGCAGA
TCTTCACGGTGTGGGACCGGTGGCTGGCGGCGAGGTTCCCGGAGAGCGCGTTCGTGTGCC
GGACCTACGCCGTGAGGCTGGTGCCGGGCCTGCCGCGGTACGGGCTGAACCTGCAGCGGG
TGTGCTTCCGGACGGCGTACGTGGCGAGCACGACGGCGCTGGCCGTGGTGTTCCCCTACT
TCAACGAGGTGCTGGGCCTGCTGGGCGCGCTCATCTTCTGGCCGCTCATCATCTACCTCC
CCGTCGAGATGTACTGCGTGCAGCGCCGGGTCCGGGCGTGGACGCCGACGTGGGTCGCGC
TGCAGGCATTCAGCGTCGCATGCTTCGCCGTCGGCACCTTCGCCTTCATCGGCTGCGTCC
AGGGCATCGTCCAAAAGAGGCTCGGCTCCTCCTAGGCCAGACCGCCAGAAAACCATTGTT
GTACTTGTACATGTCTTCCACCATTAGCTAACGCTTTAGAAACTGCCCGCTTGTCTATGA
AATCTTTAAAAGGTCTTGTATTTAGAAACGGAGGGAGTACTTGATTGCATCTTTGGAGTA
ACTACTGTCTTAATCCCTCTTACGTTACAGTGGGTGATGATGAACAACCGAACAAACAAA
CTATCGATTGCACATTTGCTAGTGTTACTCCAGTGTATCATTCTTTTATGGACACTCGAA
TTTGGTCATCTTTTATATTGGTGTCAGCTCAAGTACTTCTTGCATTGCGTGCATGGAAGG
AATTTCCTCCTGTACACATGATTTCTCCCTGCAGGCGTTGCCATCAGCACCATGGCCATC
GAGCATCCCTCCAGACGCACCACCTCCCGCCGATACTCCCCCCGCCATCTTTGCAATCCT
GATGGTTCGAGTTTTCTGTCGTCTCATCAACCGCTGTCGTGCCGTTTCTTCCAATGTTTG
CTCTCGGTTTCTGATGAAGGAAGCTGCAGGAGGAACGGATCTCGAGGTCGCGCTTCAGAG
CTTCAGCCCTGTAGCTCCCGCCCAGGTACCTCGGATGGTCTAGGAATCTTACATTCTTCA
GCCAAAGCCTGAAGGCCTGGAGAGGAGCAGAGGAACACCAACAAAGATTACATGAGCTTG
CTTAACCTCAGAAAGCGCGAACTACTATGTCCAGTAACAATCGACTGACTGAAGCATTCT
AAAGAAATGATTCAAAGCTATGCTGAATCAGCAATTCATTCTAGCCCTACTTAAGATCAG
GGGCTACCAATGCATGTATACACGCAAAATGCACTTATTAGGTAACGCAAAGGAAACATA
GAGAAAATGTTAGTTCATGATATAAAACAAGCCATCTCCTAATTTTAGTGACAGTCAGAA
CTATCTAGTCTAGATTTATAATGCTCCAAGCAACAACCAGCATAATCTTCAAGGGTGCAT
CTGCTAATTTACTTGGACCATCATGGTGTAGAGCAGTACAGTCGTTACAAATTCAGAACT
GCCAGTTATTTGATCATAGTTGTAGATAAAGTATTAAAGATACCCTTTGCCCGTGCAACT
TCAAAATCCGAGACGAAAGATATGGAATACCATGTATACTTCAATCTCCTTTTCAAATTA
AGGAGCTTCCTGCCGTCCCCAATTTCATTTTGCAACGAAACTGATAACACAATCACATGT
TTACTTGAACTTTCGTAACTATAGCAATTCCCAACATTAGCTATTCCTCTAGCAATGCTT
ACTTGCTTAGTAAGATTTCCTGAAGAAAAGTCTTCTGAACTTTTAACAGTTCATGTCACT
TAATTTTGTGTTTGAAATGCACACATCAGGTCAATTTTGTGATTTTAAGTTGACTCGTCC
TGCCGTAAAAGGACAACTAATAATGGATTGCATGCAGATGACCAGAGAAAAATAATGCCA
ACACAGTCTTCCAAAATGAAGCCAAGTCACTGACTGTGCTGTCGCAGCTTCTAATGTTTC
GGTTTTCTCCCCTAAATCGACCCCGACACCGATGTCCTGAGCTAAGACCTGTTTTGATGG
AACCACCATAGTTTCCCCACCTTTAGTTTAGTCTGCTAGTTCATGTACAGCCTTTCTTCT
TTACTTTCCATTTGCACCATTTGCTAACCTTGGGTTAAAAAAACATAATGATTAAACAAA
AATCCAATCATAGAGATCATAGATATAGTATATTCCACATCATACCCCTTGATTTTGACC
CCTTGAGTTGTGATGAATTTTACCCTATTTAAAAAATCTTGCCACAATTTACCCTTAGTT
GTGACCAAGTGATGGCATTTACCCTACTTTATATTTTCTTCAAATTGACAAGGTGGACCC
ATATGTCAGGATGATGTCACAGCTGACTTGGTGGACAACTCAGACCTGTCTTAGGGGCAA
TATTTGACATGGGGCAGGGGCAGCACCATGCGGCTAGCTGCACCTATTTGACAAAATTTG
ACACCATTTCATAAAAAATTGATGAGACTTGAACATAATTCGTTACATCTCCAACGAATA
CATATCTGAGTTATTCAGCCAAAGAAGCTGCCACGCCATCCTAAGGTCCACCTTGTCAAG
TTTGGGTAAATAACAAAACAGGGTAAAAACTGTGAAAAGGACTGAAATAGGGGATAAAAT
ACGGCAAGATTATGTAAATGGGATAACAGCTTTCACAAAGTCTCAACAAAAGGGTGAAAA
TTGGAATATACTCTTATAAACTTTGAAGCTTTTCTCAATATTTTTAATGCCAGAGATGTG
ATAGATCAAAAGAAAACTCTTAAATAATCTCTATTATCTACACATATTAATCCAGTTGGT
CAACCAAGAAAGATAATTCAAGAATCAAACGACCAACATAGGAAAGAAAAGTAATAAAAA
TATCTGAAGGACTGTCTATGAGGATAGCATTATATATGAGAATGTAAGCATAAACATAAG
CATGGTACCAGAACAGGAGCATTGAACATAGAAAAGTTACCTCCCAGTATATCCCTGCAG
CAACCTTATGAGGCATCAGCCAGAAGAATGTTGCTAGCTTAACCGAGTCATTCGTCTGAC
CAACTAACTTGGCATCCAAAGCTGCAGTAAAATAGTTTCCAAGTGTTGGATGCTGAACGG
CAATAGCCACGTATAGATTATTGCCTGGGGCATCAGCACGAATACTCCAATTGCCAAGCA
TATCCTAGAGATCATGCAACAAAAAGGAAAGCCACCAAGATTATGCAATGGGCTAATGAT
AGTGGATCGGATACAACAAGTCCAAATTACCAGAAACTAGACCAAGTGGACAATTTGCAT
AGTAAACACCATTAGGTGTCAGGCATCAGAAAAATATTATGCAATGAACCCAACAGGATA
GAGCCAAAACTGTTTCATTTGAGAAAAAGAGCAAACGAAGTAATTCACAACTTCTATACA
TATTTTGCCTAAAAATGCACGGTTCATCGCGCAATATTTGTCCAGATGATCACTTCCATA
CATATATTCTACTACTCCAAAAGATAAGATACTGAATCTTGACCAACGACGTACCATGAA
GGGGCTGACATGTAAGGGCTTTGCAACGAGATCAGAACCCGGTTGGAAGGTAAACATCAC
CTTCTCCCCCCAGGGAGTATTTGTGACCTGCATGAAACCAATAGTAAAATATCAGACAAT
CAACAATGCAATGACCCTCGCAAAAAGGAAAAAAGGAAAACAATGTAATGAACTAACTAA
AAAGCAATCAACATGATGAATCCAACACAGAGGAGAGGAGAGGCCTCACTTCAGCAATGC
ACATCTTGAGGTGTTCATCTTGTTCTTGCGCCGCTGCGTCGTAGCAGTAGTAGACGCTCA
GTGGGTTCTGCTCGTACCCCACGCTCTTGGGCACCGTCAGGAGACGCCTTCATCAAACAA
AGAACCGGCTTACCTCAGCGCAAATGAGGAAAATTTACACATACAAAAAGATTTCAGACA
TGTTTTACATACTACTACAGCAAGCAGTGTGATTTTGCAGTAGTGTACTACCAAGAAGTG
GTGTGAGATTTGTTCTAGGAAACGCGTGAGAGGGCTGAGAAATGCGTCAGCAGGGCCGCC
TTACACGGG