Map Locations of contig_401367 (8426 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_401367

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55629 1 1084 bp AK363660 Available Available None





CDS Structure of MLOC_55629






Contig Sequence (8426 bp)

>contig_401367 8426 assembly3_WGSMorex_rbca.fasta
TATATGTATCCGTATCCACGTCGCCCAAATTGGAGTAGAAGCCGGACTCCTCTCGTACCC
GGAACAAATTCAAACCCTAGACGTCGCCGTCAGGGAAGGTAAACCCTAGACGTCGCCGCC
ATGGGAGTTGCTTTGCGGCAAGTCTGAGGAGAGAAGAGAACGATTGGAGATTACGAAAGT
AGAGAAGTTCTATGTACTATTGATGGTTTTCTTATCAAAGGTATGTCGGTACATTTTATA
ACTTAGAGCATCACCAGCAGATAACCCCCAAACCCCCACCCCATAAATATGGTTTTACGG
GGTGTCCATATAATCTAGGGGAAGGCCGACAGTTGAGCTGCTTTTGCAGTTCTCATAAAA
TTCTTCCCCTAAAATATACTCCCCCGATCCAAGATGAACAACAGATCGCGGTGGTCGATG
GCGACAGGTCGACACGACGACGAATGTTGGGGATGGTCGGCGGTAACGTACTAACATGAT
AGTTTTGTGATTTTTTTAGGGAAAGAGTCATCTCCCCCAAAATGAGGGGTTTGGGCTACG
AGGGCCCTTAAATTATTTTTTGAAACTGTTTGGGGCAAAGTTATTTGCCCAACTCCCACT
AAACTAGATTTCTTTACGGAAAATGTGAAATTGTTGGCGATGTTCTTACTTTATAAGTGC
CATAACCATATTTAGTCTTGAACATGCAAAACATGTACACGTTATTATACAATAATGGTT
ACAGGTATATCATTCAATATTACTACTTCTGATCCACAATAAGTGTCATGATTTTAAACT
AGGGTTACTTCAAAACTGCCATGCTTATTTTGGATCGGGGGAGTATATTCTAGACCCCTT
ATTAAACAAAGGGATTTCTTGGAACATTTTCCCTTTTCTGATAAGAGGCAACCGAGGCAA
GAAAAGCACATTACTTATTGTACCTATTAATAAAAATATATTAAGGAAGGGAAAAACTTT
AATTTAGCCATCCGTACTTTCTTAGGAATATAAATAAATTGGGGCCCAAAATATATTAGG
TCCAATAGCCACTAAATTTGATCGATTGGGCTAAAAGTATAATTTTACCCGCAATAACAG
GCTAACGTTCCCTCAAGGAGGTCACCTGAGCAAAATATTGTTCCCCAACCAAGTACTCCC
TCCGTTCGTAAATATAAGTCTTTTTAGAGGTTTCACTAGAGAACTACATACAGATGTATA
TAGACATACTTTAAAGTGTTGATTCACTCATTTTACTTCGTATGTAAACCCTTAGTGAAA
TCTCTTAAAAGACNNNNATTTAGGAACGGAGGGAGTAGGAAGGAATGAGCATTTTCTTTC
GCTTAAAAACACTCTTAGCCAACACTCAAGAATTGCCAAGCGAAAACAGATAAATCAGTT
TTGCTATTACATAAGGGTTTACCATATTCTCAAGTAAGAATAATCATGTTGTATTAAAAA
GTCAAAAATTATAATGTTGCAACAGAGTATTTGCCATGCATTTTCAGGGATTATTCATGA
TTGCTGCATGGAGAAATGCCAGCCTAAAAGGGGAAAATGGTGAAAATTGTCCTCATACAA
CAATAGAAAAGGGTAAAAATTGTCATGCTCTAGAAAAATAAATTTACATCCGAATATGTT
CGCTCAGATTACCACCCTGAGCAAACCAGTTAATGTAATCATCTCATAGTTCGCTCAGAG
GATCGTTTGAAGGGAACACTTTAGGATTTGTGTACGGGTTCTAACGTGCATGAGGGTGTT
ATACCTTGGTATCCTTCAAAAAGGTTTGACATCAAATTTTTAACTTTTTTTTCAGTTGAA
CTCAGCTTAATTGTTTTTGTTTTCGTATTTTCTATTGGTGGAATGTGCTTAAAGTAGTAC
TCCTTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTATATATGAATGTATCTAGTCATGG
TTTAGTATTTAGATACATCCATGTGTAGACAATGCTAAGACAAGAATTTTGGAACGGAGG
GAGTATTGAACTCAAAAAGGATATGATAATAGGGCTTACAAACATAATTTACAAGCGTAC
TTGGATTATTCCAAAGCTACAAACACACATAATGATGATAACAGTAATAGTACTCACGAA
GCTACACATAATTTACAAACATGCTTCGATTATTGCACGAACATCACGCACACATCTAAC
CATTACAAACACACATTAGTCTGGAACAAACAAGTTATAATAAGCAAACAAAATACGGAT
GTGATGAATCACACCACCACCGTTTCCACGCTCCCGTGGCGCGACTCGTGCGGCAGCGGC
TCCGGCGCGGACGGGAACACCAGGTTCTGATGCACCAGCGCCGCCACGGCCGCGCCGATC
ATCGGGCCGGCCCAGTACACGGCCTGGTTCTTGAAGTCGCCGCTGACAACCGCCGGCCCG
AACGACCGCGCGGGGTTCATGGACGCCCCCGTGAGAGAGCCCGCCGCCAGCACGCAGGCG
CCCGTCACGAGCCCGACCACCAGCGCGCCCAGCGCCGACGTCGCCAGCCCCTTCCTGCCT
TGCCCGCGAGGGTCGCCGGCGACGTGCACCGTGTACACCACCATGAACGTCATCACCCCC
TCCACTATCGACGCGCCGAACCCGGTCATCTCCACAGCGATCCTCGTCGTCGGCACGGCC
TGCAGCCCCACACACACACACGCATGCTCTGAGGTGTATAACTAGGAGTTGCATGCATGC
TTGTGGAAGTGATCGATGGACGGTACCTGGCCGGCGGAGAGGAAGTGGAGGACGAGGCAG
GCGAGCGTGGAGCCGAGCAGTTGGCACGTCCAGTAGAAGATGGCGGTCGGGACGCCGATG
TGGCCGCCGATGGCGAAGGCGAACGTGACGGCCGGGTTGACGTGGCCGCCGGAGACGTCG
GCGGCGATGAACACCGCGGCGAAGAGCCCGAACGACTGCGCGACGGCGGTCGCCACCAGG
GACGAGGCGTTGGACGTGACGTCGGGCGTGAGCATCCCTGGCAGGCACACATTCCCCAAA
GAAACGCGCGGTTAGTGAACCGTGAGCACGCACGAACGAGATCATCAACTCACACGGCCG
CGGCGAAGTCGGCCGACGTACGTACTGGCGGAGATGGCGGAGCCGACGGCGGTGAACACG
AAGAGGAAGGTGGAGATGAACTCGGCGAAGTAGGACCGGAGGGACGGCGGCGAGAAGCAG
TGCTTCAGGTGCACGCGGAGGTTGGACGCCATTGCCACAAGTTCCAGCGTCTCGAGACTC
TCGACGCAGTGAAGTTTGCACGGATGGATCGCAGAGGAGCAAGTTTCAGAGTTTATAAAA
GAGCGAGAGGGACACGACCGTGCAGCGAACCGGCGCCCCCGCGCCCGGGAAGTTTCCGGC
GGTTGCCGCCGCGCGCGCTCGCGCCCGCTCCAGTGGCAACCAACCGTCAGAGGCGTGACG
GGAGGGCCTCCACAAATTTGTCACAGAGATTTCGAAAAACGCCGAACCGTTCATGTAAGA
TCGAGTGGTTCTCTTACACTTTTACATTTTTGAGGTGGATTAGAATCGAGAAGGGAAATT
CATCACACAAGGGGAAACAGCAACGAGCCAAAGAAGCTAGGTTCGGATCCGTGCGCTTCA
TGGGTATTCCTGCTGGTGGCCGACCGGCTGGTAGGAGGCGATGAACACGTCGCCGTAGAC
GAGCCCGGCGAGGCCGCCACCAATGAGTGGCCCGACCCAGTACACCCAGTGGCCGGAGAA
GTTGCCGGCCGCCACGGCCGGCCCGAAGGAGCGCGCCGGGTTCATGGAGCCGCCGCTGAA
GGGCCCGGCGGCGAGGATGTTGGCGCCGACGATGAAGCCGATCGCCATGGGCGCGATGGT
GCCGAGGGAGCCCTTCTTGGGGTCGGCCGCCGTCGCGTACACCGTGTACACCAGCGCGAA
GGTGATCACGATCTCCATCACCACGCCCTCGACCTCGCTGATGCCGGACACGGCGTGCGT
CGGCATAGCCTGCACGTACATAGCAAAAGCCAGTTAGTCGTTTTCACGGTGTGTTCTGCT
TGGTACCAGTGACGTGCCAAAGGTTTGTCGCACACGTGGTTCGTACTAGAAGGTTACTGA
GTTGGATGCCAACCTGGGCGTGGGTGACAAACTGCAGGAGGAGGCATGCCACGGAGGCGC
CGAGCAGCTGGGCGACCCAGTAGAAGAGCCCGGTGAGGATGGTGACGTGGCCGCCGACGG
CGAGGCCGAACGTGACGGCGGGGTTCAGGTGGCCGCCGGAGATGTTGGCAGCCATCGCCA
CGCCGACGAAGAGGGCGAAGGCATGGGCGATGGCGATCGCCACAAGGCCAGCCGGGTCCA
GTGCGCCACCCTGCGTCAGTTGCCCTGCACAAGAAGAACCTCTTTGGTTAGCGATGGAGC
AAGCCAGAAGAGCAGAACAGATCACCAGCTAGCAGGCAGGGGAGGCTCACCGTAGGAAAT
GGCGGACCCGACGCCGGCGAACACGAAGAGGAGGGTGGCGATGAACTCCGCGACATAGGA
CCTGATGGACGTGGCGCTGAACGAGTCGCCGAAGCTTCCAAACGCAAGCTTCACCATCTT
GCAGTTGCACTCGACTGTTTTCTCTGTGACTTCTTCAGGCTAAAGAGTTCGAAGTCTGAT
CTGATCACAGACGGTACTGATGGATGGCCATCCGTCTAACTAGGCGCTCCTTTTATACAC
GTGAGATGGCACTGATGGCCCCATATGCCCTGCCTAAAATGCGCACTACAATATCATGGG
CGGTGCTAAATGATCACCACAAGTATAATGATGTAAGCATTAATTGTATTTTGTGGTTGA
TTGGGCCGACTAACCACTCCGCTTTGCTAAACTTTGTGTTTGTTGCAATTGTTTAGGCAG
GAGCCGCGTTATGATACACCACAAGACAGTGGAGAAAGAAGCCTCTGCTCTAAACAAATT
ATTGGCGGTGCATTGGCTCGGCTGATGAACTGTTTTCTATTTATGCTCTGTCCTTTCGTC
TATTGAAATTGGGTGAAATCAGTTAATGATTTGCACTTACGAATGTTTTTTTTAAGAAAA
ACTTTCAGTCTATTGATCAAATATCATGGGAGTGCAAACTAAAAAAATTACATCCAAATT
CGTAGACCACCTATCAAAAACTACAAACACTGAAGCAAGCCGAGGATGTATCGCCATCAT
CGCCTTCCTCACCGGTACCGGGCAAATATTGTAGTAGACAGTCGAAAAGTCGTCGTGCTA
AGGCCCTCAAAGAACCAGCACACGAGAACAACAACCATTGTCAATGAAGAGGAACATAGA
TCAGAATGATCCAATCTGTAGACACACGAATCTAGACAAACGAATACCGGATCCAATGAA
GACAAACACCGACCGAATCTAGCAAGATCCGTCAGAGACACACCTTCATACTCCCTCCGA
CGATGCTAGATGTGCCATCGAGGTGGGCTTCACGCGAAGAACCTTATTCCATCTTTAGCC
AGAGCCACCATTGCCCCACCATCGTGAGTAGGATACAAACCCTGAACGCACTAAAAAGCA
CCTAAAAATGTAGCATAGTCCTTTCATTGGCAAGGGCTGGAATCCACCGTGCCTCCATGG
CTCAAAATCACAAGAGGTGAGGTTGATGTGCAGCAGCACTGACGGGAGGCGTGGTAGCCC
TACTTACTAGAGTCGCTCATGGGAGGAGGAGGCCACGTACCTGACTCGTAAACTTGCGAA
TTTTACTTATGTTTTTCAGGATGCCATGGTTCCTACAAGGAAAAAGTTCCAGGTCAGGCA
CAAACTGCTTCACTCTCTTCCCTTGGCGACAGAAGCGGCATTCCATACCCTCCTTTGGAA
ATCGACGAGGCAATGATCTCCACCCTCTCCGCCCGCTACTCTAGCGACTGGTGGAGGGGG
GTGACTCCCATTTCTCTTCTAGTTGGTCCACATATTTAGGGTCTTGTGTTCATCTAGTAG
CGTCGGTTTGGTGAGGTTGATGATGCGTCGAGTAAGGTGGCTTTGGTCTATCCTAACCAT
GACGACGTTCTCTTCGGCGACGTCGCTGAGTCGATGGCATGGTTTTCTCGTTGTCCGTTC
ACAGCGATTGGCTTTATGTTTGCTGTGTCTCGCGACTATTTTCATTCATGGTGGCGCCCG
CAAGTGGAATATGTTGGTGCTGGTTCACAACTTCAAGGCTATGAGGCCAACCTGAATCGA
TTTTGGTTTGCTAGTGTTTCATCTCCTCCTCCTTTGTGCATCGCGGCGGCGCTAGCAGTC
GATGGAGTTTTTAGATTTGGTTGGTTGCAAGGATCCTAAGGGACTTATTTATAATATTAG
TTTAGTTAGACTTTTTTCTGCACAGTTTTCTCGACACTTGCCATGTCCTAATATTTCTCG
TAGTTTCTGCATGTAACCGATTATAGAGCTGAGTAGCCGCCTCCCTCGAGCGTCACGTTA
GCCAACAATCTGATGTTCGATATCTTCCGTTATAACGACAAACTTAACCATGTGCATAGC
ACAAACCTTATACGTATCAAACGCATCTATATTTTTCTATTGTTTTATTCTATTATAATA
TCATTTTATATTTTTATAACAATTTATATTATTTTTTCACTAAATATTTACTCTATGCCG
AGAGCGAGTTGTTGTTTTCTACATGTTTTTGTTTTTGTAGAAAATCCATATCTACGGGGG
TAAAAAAACTAAGGATTTAATATAATTTTTTCATGACTAGAAGATTCCAGAAAGTGTTGG
GACCTTCAAGGGGCCCGCCATGCCCCCCACGCAGCCAGGTGGTGAGGCCTAGGACTGACC
CGCGTCGGGTGGCTGTGTGAGCCCTCTAGCCACTCCATCCATCCATTCTTCTGTCTATAA
ATTTCATCGATTTCCTCACAAGTAAGAGGTATAGGTATTTTCCTATGCTCTGACTTGCCG
TCAAATAACTTCTCATCTAATCTAAACTTATGGTTGGATGATAAGAACCTACGATTTCCA
TATAGCAATATTTGTTGCCCTTCTTTAGTTGTAAAGAACATCTGAATGAATGGCACTCAG
GACAAGCTACCTCACCCTAGGTAGCACACCCGTGAGTGTAGCCTAAACCTGGAAAGTCAT
GTATGGTGCAAAGGATGGTAACGCGAAGATCAAATATTTCAGACTTAGAAGAATCAAATG
TCTTTACACCATGATAGTACATATCTACTATATCATCTACCAAAGGCTCAAGATAGATAT
CCATATCGCCATGAGGTGCCTTAGGGCTAGGAATGAGCAAAGAAATGATGTAATTAGTCC
GCTTCATGTACATCCAAGAAGGAAGGTTGTATGGAATCAAAAGACTGGCCAAATACTATA
AGTACTCCTCGTTGATCTAAATGGATTAAAGCCATCAGTTGTTGCAACCAATCTAAAATT
GCGGCTGTCATTACCAATTAGTGGATGTTTGGAATCAAAATCGTTCGAGAAAATAGCATC
CGCTCGGCACCTAATCAAACCATATTTGGTCCGTTGTTCGTCATGCTACCGCATGTGAGT
TGCAGTTTTAGAGGACATAAAATACCTTTGAAGCCTTCTTTTAATAGGAAAATAGCGAAG
AATCTTTCTAGGAACTCTAGGTACCCTTTTCCCAACATGACTCTTCTCTTCTGATATCCA
CCTTAAAGTTTTACACTTTGGGCACTCACTCTCCTTGTCAAATTCATTTCTGAAAAGCAC
ACAATCATTTTCATAGGCATGAATACTAACATACCCAAGCCCAATAGATTTAACTATTTT
CTTAGCTTCATTGAAATTTTTGGGAAGTACTGAACCTTTAGGGAATTCATCACTAAGTAA
CTCAAGCACCATGTCAAAAAATTTGTCACTCCATTGCCCAAGAAGTTTGATGTGGAGAAA
TTCAACAATAAAACACAATTTTGAGAAGTTTTTACACCCATGGTATAGTTCTTTATTGTC
ACCATCAACCATCTTCAAATAAGCCTTGGTATCAACATCAACATCCGTCCTAGGGTTGTT
ATTGTCCTCATTATTCTCTGCCAACACCCGCCTATCATCTAATCCACAAGCTATGTCTCG
CAAGAAATCAACTAATTCATTATCTGTCGATGGATTCTCTACTTCTACCTCCTCAATATT
AGGGCAAGAATGGCTGAATTCTCCATGAAACAACCATGTATGATACCCCTCCATGAAACC
CTCACATATCAAATGTTCACACACTTTAGTTGCGGTTCTCCATTTCGAGTTCAAACATAT
CTTGCAAGGACATAATATTTTGTTTCCATTTGTTGAATTAATAAAAATAAAACTCTATAA
AGTTGTCTACCCTTGTAGATACTCATTTGTGTGCCTACATGCAATTTTTTTAGATATCAA
AACAGTTCATAGCATAATTATACCGCTTATTAGCTGCCAAGAAAAAAAAACTTGATATAC
ATAGGTGTTAGAGCATATTTCTCCGT