Contig Data
morexGenes
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Map Locations of contig_40102 (5296 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_40102

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55606 3 1399 bp MLOC_55606.2 Available Available LOC_Os07g05650.1, FRAME:-3, EVALUE:2e-132, 13107.m00526 protein MAGE-8 antigen-related, putative, expressed





CDS Structure of MLOC_55606






Contig Sequence (5296 bp)

>contig_40102 5296 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGGTAGATCCTAAATAATTCTTCCTCAATAAATTGGTGTTTTC
CTGTTTATCTTTAAAATTGCATACAAATAGCATATGCATGTCTATTCTAAAAATATAATA
ATTTAAATAATACTATTTCAGACACACACAAACACATAATGAACATCATTTAAAATCCGC
AATTCATTACATTCAAATTGAATTAAAAGTTCAAAGTGAAACATACCAAATCCTTCAAAT
GATTCAAAGTAAACAAAACAAACGGCCCAAATGATTCAAAGTAAACATAACACGAAGATC
AAACATGCAACATATGGTTCACCTAAACATAACGAACAAACATGAGCAACACTCCTCATT
CCCATTGTCGTTCACAGTCCAACTCCGGAGTGGACAAAGAAATACCTTCTATGTTACCGA
CTCGTTCATCGTATTGGCATATGATTGCTCACTACGTAATCACAAATATGAATTGATGAA
CATTGCAAATTGCCATTTAAAATTACGATTGCATTTTGTAAAAATGAAAGAATAAAAGAG
AAATGAAAAAAGTACCTTACTGTATTTCACCAAATAACTCATTGGCGTTGTACATGTCAA
AGTCGTCACCGACCTCGGAGAAGCTGGGGATGACCGAAGTCTCCGTGCATGACGCCGGCA
GGGTCGCCGTGAAGGAAGCCGAAGCAACCATGGTCGGGGCCACCATCGCCTTCTTCGTTG
TTTGTGGTTTCTTGGCTGGCATGACAACCGGACGAGGAACGTAGGCTCCTTCCTCCCCCA
AAATGCCGTTGTGGACGAGTCACATGCCTTGTGGCGTGCCTAGGCCAGGGCGATGGCATC
AGTCGAAGGTGGAGGAGGCAGGGACAAGCGGCACAAGCATGATGAGGCGACGCAAAAAAC
CAGCTAGGGAGGGGGGGGGGCAACGGTGTTGGTGGCCTACGGCGACATGAGATGGATGGG
CTCGTGAAACTTGAGGCATGAGAGGGGTTTTTGCTTCCGGCTACCTATTGGAGTTGTATT
GGGTAGGCGCCCATTTCCCATAATAAGTTGAGATGTTTTAATGGGGCTACCCAATAATTT
TTCATGGATCGAGCCTCTATCGGAGCAGGTTTTCGGCCCAACTCCCTTTAGCAGGAAAGG
TGCTCTGTTGGAGCGAAAACGGTGACGCATTCGACCTCATTTCCATCTGATGTTTCCGTG
CGCATCCAAACAACCGAACTGAAGACCGAGCATTAAGAAATCCAATTCAAGACTGCAATA
CAGACATCCAAACGCAGCATTAGTCATTTTGTGTTTGGGCTGGTTGTTGTACTTCTATAA
GTTCTCCATTATGGTTCAGAAAATAAACAGTTTATGCTAAACTTTCAGTTGACATGGCTG
CAATCCTGACAAACAGCGCATCACTTATATGGTTTCCTGAAGCTTAGGCAAGCAAACCTG
AATTAACAAAGCCTCGTAGAATTCATAAGGACTCGTTGTTAAGATAATGCAGCCCCGGTT
AACGAAGTACAGTACATATTACTATACTAGCTGATCAGCCACCGCAACACTAGGTTCCCG
CAACAAAAGCTCATGTCTTTCGTTTTTCTTTTTCCAAATCCAGAAAGTCAGGTCTTAGGC
ATCTGCAGACTACCCCCTCCCTCTCCCATACAGCCCTCAGATGAAGCCTCCACCAAATCT
CTACAATGGTTTTCCACCCCAACTCAAGTTCGTCGTTGTACTGATGAGTTTAGACTGGAC
AGCAAAGCCTGAAACATAGGCCAACGGTTACCCCTGAATGGAAATTGATAAGGAACATCA
TTCTGTTTTAAGAACAGACTGAAAGTTGAAGTGAAAATACCTGATGGTTGCTGCATCATA
TCCACTTCATTCTGCTGTAGCTGTACTTATGCCCACAACCTGATCCATGACAAAAAGAGG
ATTGGTCAAACAAATCGGATTAATCTTCAATTTAGTTTTCGCTGGCCATGGTCTGACTCT
ACAATGCGACACTGGATTCAGGAGGGTATTTGCCCGCCATGGATATTTTCTACAAGCAAC
AGGTTATCGTGATGGAAATCAATTATGCCCAGAATTTGCCACTGCATGTGCTACCAGTAG
TAACTATTTTGAAGTAACTGCTAATACAATTTTGAGAAACGAATAAATACTGGAGTAGTC
ATGAACTAGAAGCAACCGCAGTAGCAAGCAACTCTAGTGCATACAAATGATTCATTAAAT
TCATGCAAAAAAATACTTATGTAACAATAATCAAGAAAATCTGGAGCATGTGATAAGATG
GGGTTGGCCCTGTCATGGCAAAAATCTTTGTCATGAGCAATCGCACAATGTAAAATCCTG
GAGCTGGTAAAGAAAAGAGCTCAGTCTAAACATGTTTATGGTACAAACTAGAAACCAGCT
AGAATCATACTCAGACATGACCATTTCTGAGGCTGCTGTTTTCAGTATATCATAGCACTG
TGTGCATCAACCGATGCAGAGGCTGGAGCTATCCCCTTTTCAAAATAATAAAAATATACT
CCCTCCGTCCCAAAATAAGTGTCTAAACTTTATACTAACTCTAGTACAAAATTGTACTAA
GCTTAAGACAGTTATTTTGGGACGGAGGGAGCAGTTCCTTACCAAACATTTTATAGCTGT
TAATGCTGCACGTTATGGAGAAGGCAATAACCTGGACAGGCCAAACATTTTATAGCTGTT
AATGCTGCACGTTATGGAGAAGGCAATAACCTGGACAGGTTAAAAGCCTAAACATATTTT
GAGAGCATAGTATTCCTTCTACAGGTTAAAGAGATAGATTAATTTCACAAATTAGTGTTT
CTACTCTCTTGGGCAACCAAGCAAAAGTTCTGATATTTCTAATATACTGTACATACAGGT
TGATGCCTTATTTTTTTCAAGATTGTAGTTGATGCCTTTACATACCTGTGAAATGTATTC
TTTAAGCTTGGAACTGATGGATTCATCCAATGCCCTCTCTGCAAGCTCATAAACCATGGA
ATGGCCTTCTGGACCAGCAATCTTCTCCTTCAGCAAGTACCTGGGCAAAGATACCAAGTC
AAAACAACAAAACTTGCCAATGAAATACACACTCTGCAGCACATCCTGAAAGTACCAGCA
ACCTTTGTTGCACTAGTAGTTCAAGCGCCTGCTTATTGTTCCGGAGAACAGGGTGGTCCT
CATCAGTCTCATTTAAGCCCAACCGTTTCAGTTGACGCCAAAGGTCCTCTGAAACGTGTT
TGTCAAAAATCAGTAACATCAAACGATAAAACCTCCAGACTACTGTCGAAGAAAGAACCA
GCAATCCCTACCTTCAGAGATCTTGCCACCAGCGACATGAACAATGCTTATGACAACAAA
AGCAAACCCAGACACATGGGCACGCTCCTTATCCTCGACATACTTGCTGTACACCTCAGG
GTCCAGCTTACTTACCAGGACGTAGCTCTTTGCATCCAGATTACCTAAACACAGCTCGAT
TCATCGCAGGTCATTCTTAGGTTCAATCAATTTATACCTGATCACATCATCAGCAAAGAT
CCAGGCTGCCAAGTGGCGGCGACATTGCAAGGCGAAAAGAAGAAGAAAAGCGAGCTTACT
GGGCTGCTGGGAGGAGGGGCGTCCAGAACGGGTGGACGTGGCGCGGGTCCTCTGGAGCTC
CCTCATCTCATAGCCGAAGGTCGCGGCAAGCCTATCCCCAGCTTCCTTGATAACGAGCGC
AGGGAGCGCTCGCTGGCGGTAGTTCTTGGTGATGATCTGCGTGAGCTCCTCCCGCTTGAT
GGGGCAGCCGGAGTTCTGGTGCGTCTTGAAGAGCGCGTAGCGCATCACCTCGGCCACCAG
CTTGTCCTTCTCCTGCAGGACCCGATTTGGGCGTATCAAAACGTCGAACATCTTGCGTGC
GGAGGTCGAACTGGGAAACGTGGACGCGTAGGGTGTGGCGTACCTCCGTGGAGATGTCGA
CTTGGGCGAGTTCGTCGCTAGTCGCCATGCGATCCAAGAAAAGCCAATATGACGGAAAGG
AGGGCGGAAGGAATTGCCGCGATTAGGGGCGGAGCAGAAGAACCCTAGGTTCGCAGTGAG
CGGGTTGTTTCGTGGTAGAGTGGGCGCGAGAGAGACACGTCGGGAAACTGAACCGAGTGG
ATCGCGGGAGGCGGAGTCCAAGCACGATGGTTAAATTTCATCTCAAGGGTTGCGGACTTG
CCCTATCTATTTTCGATAAAGCTATCTTCCACACCGTAGAAACTCTGTATCTATTTTCGA
GGAAGTTATTTTTCACACAATAGAAATTATGGGACAGACCAGCATCCATCAACGAAGAAA
ATACATGCAGCGACTATAGACTAGATACGGAATAAAATGAATGAACCTATTTTTCAAAAT
ATAACTATATACATCTATATGTATTATACATTAGAATCTCTAAAAGATCTTATATTTAGA
AACGGGGGAAGTAAGAGACAAAAAGATGACATCAACAAAAAGATTCTTTCTATTTAAAAA
AATTAAACATTTTGTAGCTTAAATCATCGTTTGGATTCAAAATCCGTTTTCACATAAAAA
AACACCTCGACGAAATCTTTGAAACTAGATCTCATGTTGATATGTTTTCATTAAAAAAAT
TCACGTCAAAAGTTACCATATCTAGACTACACAAACTGTTACGCCTACAATACGTAACTT
ATCATGATCTTTACACTAAAGTTACTAGGTGTATGTTTCAACTACTTTTTTGACGGGGTC
AAAATTTTACCATGGTATACGCACAGCCAAGCTGGTAACTGACGTACAAACATCACGAGA
ACTTTTTTGACCCGGGGAAAAAGGTTATTCAAAAAAACATCACGATATTTTCTGTGTAAA
TAGAATGTAACACATGCACACCATAGTTGATAACCCACGTACAAACACCGCGATTTTTTT
GACTTGATTTTTGTTGTTGAAACATCTCCAGATAATGTTGTGTAAATAACATGGTCATTA
AAACATCGCGGACCTGATAATTACATACAAACACCCTGATAACTCACATATCACATACGT
GATAATTTATGTACCCCGATCGTGACAGCGTTGGCGGCGTGGGGGGGGATCAAGTATCCC
CTTTCAACTTTCGTTGTTGATGAAATATTCCATTGGTAACTTTTGTGTGAATAATATGAT
AGCTCATACATCGCATACATGTGCTCTACTGCATTTGCATGTGAAGAGAATGTTGGAGGA
GCCATTTTTATGCCCCGGTAATTTCCATGTAAACAGGTTGGTAACTCGCATAGTGCTACT
TCTTGAGCTTGCATTG