morexGenes - Barley RNA-seq Database

Contig contig_40051
Source Contig contig_40051
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_40051 (8068 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_40051

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55539	1	1004 bp	MLOC_55539.1	Available	Available	LOC_Os05g05280.1, FRAME:-2, EVALUE:3e-19, 13105.m00547 protein zinc finger family protein, putative, expressed
MLOC_55537	4	1568 bp	MLOC_55537.1	Available	Available	LOC_Os12g44130.1, FRAME:+2, EVALUE:2e-14, 13112.m04660 protein expressed protein
MLOC_55538	4	1837 bp	AK370764	Available	Available	None
CDS Structure of MLOC_55539

CDS Structure of MLOC_55537

CDS Structure of MLOC_55538

Contig Sequence (8068 bp)

>contig_40051 8068 assembly3_WGSMorex_rbca.fasta
CTTCTTCGCCCTCCACAGGGACTCTGTCACTGCCTCTGCCTCTGCCTCTGCGCCCGCCCT
CCACAAGGCCAAGGCCAAGGCCAAGGATACCACTACTTCTATCAGCAGCAGCAGCAGCAG
CAGCTCCTCCTCTCCTCGCCCGAATCCATGCCGGGCCATGGCCCTCGCCCCCACCCACGG
ATCTGCCGCCAACGCCCATGCCATGGAACAGCCTGCTGGACCAGCAAATGCACCACCACT
GCCACCGGCAGTGGGAGGAGCAGCCGGACACAGCAAGAGGGCACCCAAGAACAAGAAACC
CACTGCCAACAGCAGCCCCAAACAAGCCCAGCATTCCGGCAAGCCGGTGGCGCTCATCCT
CCACTTCGCCGCCGATCATCAGCCTCTGCCCACCAAGGAGCAGCTCCACTCCACATTCCG
CGGCTTCGGGCCCCTCATCGAGCCCAACACCGAGGTCACCAAGAAGCGGGCGCGCGTCGT
GTTCCAGGGCAGCGCCGCCGCGGAGGCCGCCTACGGCTGCGTGCACACGCTCGGGCTCGG
CGCCGCCTTGGCCGCGGCGCGCCTGCAGTACCTGCGCCCGCCGCCGCCCGCGCCAAAGAT
CCCGCTCACGGACGTCAGGAACAACCTGGAGAAGATGATCGCGTCCCTCACCGGCCCTTC
GCTGCTCGGCAAGGGCAGCGCGTGGAGCCTCGCCGGAGAAATGCAGCACCTCCTCTTCAA
GGTCGACAGGGCCCTGGGTGCCGCCGGGGCAGGGCCTTCCACCTCGGCTGCTGCTCATCA
CCATTGAGATCAGCTCTGCTCCTGCAACTGCTGGATGGAGATAAGCTCCTCCTACCTCCT
GCTAGGTATAGTTTGTTTAGTCAGCGATCCAGTTGGTCTTGTATATTTCAGTTGAGATCC
TGCTAGGTACTGCTACTGCTCGAATAATCGTAGCTGCTTATTCTCACTCAGAATGTTGAG
ATCCTACTGGCTGCAGCGACCACATCAAGCTTCAATTCCCCAATTATTGTGTAATAAGCA
GGCCATCTCCTACCTCCTAGTATAGTATAGTATAGCTAGTTTAGTTAGTGATCCAGCTTG
TCTTGTAAATTATGAACTCTAGTGCTGCTGAGAACCATTGTAATATATATATCTAGCGAT
GGTCGAGCTTCTAATGCTCATGTGTAATATATATATCTACCTGCTACAAAAAATGAAGTA
AGCTCCGGTGTGCTTGTTCCCTTGCTGGTCTCTGCCTTTGGCATGATAGTGATGATGATG
ATGATGATGATGATGATGATGATGATAAAATGCAGTTGGTTTTGCTGTACCTTTCATCTG
TAGTGGATAAGCCAGAAACTGCAATCCTGGAGTGAGTTGATTTGGTTGACATCTTCATTT
CGACCTGAGACAGCAAACAAAAAAAAAGGAAAGCTTTATGTAAAGTGAGTTGCAGGTGGT
TGATAATAAAAAACAAGCAAAACTTTTGATGTTTGCTCAAACTCACATCTCTCGATCTGC
ATCACCATCAGCAGTCATCATTCATCACTGCCAAACTGAATTGGCATCTTAGGGTGATGG
CATTGGCATGCACAACACAATGCCAAATGCCAAACTGAATGATGCATACCAACAATATCA
ATTGCTCATGACCCACAACAAGAGCAAAACCTGGATAACAAACAATCCACACACAAATTT
GTACAAAGGCCACAACCATAAGAAATCTTCTCTTATTATTTTTTAAGTGTAGAGCAGACA
GCATATACATGGTCTAAACCCAGAATCACATAGCCAGATTTGAGTGTGACTTGTTCTTTA
TTCCATCTCTAGGCGGCAATCCAAACATTGATCACAAATTTATGACAAACTGCCATATGT
ACCAGGATCCGGCTTATACAACTTAGATTGTGTTGCCCTTGTCGGATGGTCGTCAGGCTG
GTGCTTAGACGGCTTCCGCCTGCTCTTCCATCTCGCTGCGTCCAGCATCGCTTGCGGCAC
TGCCGTTAACCGGCACCTCGGCGACGGCGACGGAAGGCGAGCTCGCGGCGCCGTTCACCT
GCACCTCACTAGCGGCCACGGACGTGTCGCTTGAAGATTGCTTTGCAAGGGAATTCTGTT
GACGGATGGCAGCCGCTGCTTCTGGCATGGCAACACCTGGAGGCTGAGGGGGAACCCACT
GGCGTTGAGGCAGCGGCCTTTCCACAACACCGCTGCTGTATGCCAGCGGCCTCGGCTCCT
CCGCGTGAAAATCAGGGGCCTTCCCGTTCTGGTGGTACGAGGGCGCATAGTTGTCCTGAG
CCTGAGAGTATGATCCATCCTCGTTCAGGTAGGCGTTGGATCCATAACCAATCTTTTGCT
GTGCATGTTGCAGCATCTCCAATGCCTGCTGCTTTTAGCAATAAGCCAATAATAGATAGA
GACGCTGTTAATTATTATTACAAGTAAAAAGAAGCACTCTTGCTTGCAGCAAAGATAAGG
TTCAGGGTCATCGTACCTTGGTCCCAGAAGATCGATTATCCCCTCGCTGCACTGTCTGCT
GAAAGTCGGAATGTCATACCAAAAGACAGGTCAGACAATATTCAAGAAACAAGGTCAGAC
AATATTAAAGGTGTCAATACATGTATATGTAATGAGGAAATGCCACACCAACTTAGATGT
ACATATCTCATTGAACAGGCTAGATGCATGTTTTGCATACAGATGGGGGTAGTCAGAATG
TCAGATTTTGTATAAGAAAAAGAAAGATATGGTGACTTTGCTGGAGTCATGTTTTGCATA
CCAAAAATACATGTATACACGCTAGCAAACTATATCTGGTTAACATGCAAAAAAACATGA
TATATAGTTTACTGGAATCGATTAACTCAAATGTGAACTTTCCCAAAGCTGGACAGAAGG
TTATACTACAGAAAATGACACAATTTGTTCAATACAATGTGCATCATACTAAAGCAAAAT
TGTGTTTTGAAGAATCAATCCAGCTCATTCACTAGTTCAGCAAAAGCAAGATGTATTAAC
TATAACCTGATTGGTTTCTTACCTCAACATACGATCTTGAATATGATCCAGAGGTAGGTT
CAGTAGGTGCTGGCGCAAACGAAGGCCTCCCTGCTCAACAAACACGCAATGGTGGTAAGT
AGCAAGAAAGATGGAAGCAACTAGCTAGGAGCTTAGCAAGAGATGCTGACCTGAGCCGAA
GTCGCTGTTTGGGGCACCATACATATTAGGTTGCTACAAAAAGGAAAAGCAGTTCAGTAA
TAGGACAGTTATCCAAAGCATGAGCACGTTATTGTAAGTGTTATTAGAACAGGATGAACA
AAAGAAGTGCACACCTGAGGAGGTCTCCATGGAGTGTTAACAGGCCCTAAACATTGTGGT
CAAACAAATAATAATTTGGTCAGATCCTCATAGTTATCTGCGTCAACAATCATAGTAAAA
TCTGTCTGATCTAGGGCATTCATGCATATGGCTTTATACGACATTGTCACAACAAAAGTT
GTACACTTTCCGATACACGGTGGATGTGAGTTGAACAGCATAGAGAAGGCCTTGTAAATG
GTGGGGAAAATTGTAGAGTCAAAGGTCTTTAGCATCGTACCCTCTACAATTAGACCAGCT
CTGCAGCGTGTTTGATGCAAATAAAGAGCAATGAAGTATGAAACGGTACAGGTGGGTCGA
TACAGCATTATGAAACGGTACGGATGGATTTATACAGCACTGTGCCGATGTAAGGTGGAT
ATCTTCTGATGCAGGTGAAAAAATAAACTTAGCATTGACTAATGGGAAGTGGGACAGCAT
TACAAAACAAGCCTTCCATTTAAATAAAATGGGCAAAGATGGTCTTTAAGGTTTTCAGAT
TGCAGCCTAAATAAAATAAAATGCAACAAAGTGAAATGCTAAATATATATATACTGACCA
TTCCTTGCGGCGGAGGGGGCATGTTCCTCCAATGGGCGGTAGTGCGAAAACCTATCCTCC
CTGGTAATATTTACGGAGTCCCTGCTATGGCTCAACGACTCGCTCAACGATTTTAACACC
TTTGCTTGGGAGTCCAGGGCCTGTGTCAAGGTCACGAGTATCTTCTTCTCTGCCAAAAGA
AGGAGAATGGGTATCATATAACACAAACCAAAATTGCATCAACATGAAACAGAGATCATA
TTATGTAGTTAACTGAACTAGGATTCTCGCAAAATTAAAACAAAAGGACTGAACTAGGAT
TACAAGGCGATGAATTTATGAGAAACAATGTGTTTAGGATACTGCACCTTCATCCTTTGA
AGCGAGCAACTCCTGGTTGGTCTGGGCGATGGCGGAAACGGCGGTGGCGGAGGCCTTGAC
GGCCTCCCTGGTCTCCTCGTCGATCCTGGCCTTGAGCTCGGTGGCCTCATCGCCTTCTGC
GACGACCCTGTGGATCCATGACTTGAGCCTGGGGAGTAGCAGCTTCTGTTGAAGCAGCAG
ACATGGTAAGAGGATGCTTGCTTGCAGTAGAGTTGAGCTGGGTTTGCTGCAGAGAAGGCA
GGAGGAGAACCTTGATGAAGACGGCTGCGCTGGCTCCGAAGCCGAGCAGGAGGCCGGCGG
CGACGAAGGCGCGGTACCAGGTGAGCCTGGGCTGCGGCGCGGCGACGACGATGGGGCCTG
CCGGTGGGGCGTAAGCTTGTGGAGGCGCCGCAGCGGTGTGGACAGGGGCCTGGGCCTGGG
TGGGAGGGGAGGCGGTGGTGGGCGGCGGATCCTGCAGCAGAAGAGAGGAGAGGAGGGCAA
GTAAGTAAGTAAGGTAGATGGAGGAGGATTGGATTGGAAGAGGAAGAAGAAGGAGGAGGA
GGAGGAGGAGAGGCGTACGGGGACTCGCCGGAAGGCCTCGTCGATCTCGTCGTTGGTGAG
GCCCTTGTTCTGGAGGAAGGAGCGGCGGTAGACGACGGCGGAGCCCCTGACCTTGGGGTG
GGAGAGGAACTTGACGGCGTTCTGCACGTAGTCCTCCCTCACCGGCTGCGACGGCGCCTC
GAAGGCCAGCTGCTGCTTCTCGCCGTCGGCTGGCTCCGGACAGAATTGCCTCCAAGGTCA
GCAATCGAATCGGGGAATCGAGAGAGAGAGAGAGAGATGACAGACCTTGCGGCGGCGGTG
GCGGCGGATCAGAGTCCATCCTCACCTACCCCGATGAGACGAGAAGCTGCTGCTGCTGCT
TGAGATCTGTGCGCTGCTCTGCTCGTCAACCAGGTTGGGTCAGGTAAAGATGAGTTTTTG
AGACAACAGAAGCAGCAGCAGGAGAAGCAGTTGGGATGATGGATATCCTCTTCTAGTCTT
CTTTCTTCTTCTCTTCTCTCATCTGCCTTCTTTCTTTGCCTTCCACCCAAAAATCGTATA
CAATTCTTTTGTGTTCCTTCTTATTCATCTACTTATTTATTTATTTTCTCTTTTTTCTTG
ACGCCGGTAAAATGTAAAAAAAAGAAAAACTATTTCATGCGAGTAGAAGCGAAAGAAAAG
GTAATGATAATTGGCCATCGTTTTTTTTTTTTGTCAATTTTACATGGCAGACTACAAATC
CTGCCCTTTTTCGCCCCAAAAATTCTTTTCTTCCCAAAAAAAATGAAGAAATGTCATGTT
TTTTCTTTTTCACGGCAAAATCTTTCTTCTTCACAAAAAAACATGCCATGCGTTTCTAAA
GAAACCATACCTGGCCAAACGGGCCGTGCTAATCGGGGCGGCACAGAAGCACGGTGGCCC
GGCACGCGATCACGCACGCAGCCCTCCTTGAGCCGTGCCTGGACCGTCACCCTCAGCACG
CGGGCCAGCCCGGCACGTCACAAATTCATAGGCACTGCAATATCGTTTGCTCAAAAAAAA
AGGCATTGTAATATCTTATCTTTCGCATTCGACTCAACGACTTTTAAACTATAAGAGATA
TTGTATTGCTCTAGGCATAACTCCTCATAAGTTTAATTCAGACATGCCTGCTAGATGGAA
CTCTACATATTTGATGCTTAAAGCAGTTATTAGGGACAAGAGTTCCGTTCAATGGTTTTA
TTAATGCAAAATATGTGGTTGATTCTCAAATCGGCAATAATACTTGGCATGTTATTACAA
CATTGATTGCAATTCTTGAGTTGTTCTATGATGCAACATTCCTGGGGTTTATTACCCGAC
ATCACCTTTGATGGTGCATACCATATCAGACATTGCTGGTCATCTCAAAGCATATGAAGG
TGATGTTGTTGCTGACATGAAAACCAAGTATTTAAAATATTGGCAACATATTCCACTGTT
GTATGCATTTGCATTTATCTTGGATCCTAGAGCTAAACTTGAAGGGTATTGTAGTGCACT
CAATGTACTATCGACGGCCCTAACTTTACATTATACTGATGACTTCAACATGGCTCGTGA
AAAGCTTGTTGAAGTTTTTGCTAAGTATGAGCGAAAACATGCCGGAGTTCGAATGCAATG
ACCTCCACCAGCAACTACTTCTGGTAAAAAGAGAAGGGCATGGAGCAAGATCCTTTTTTC
TTCGTCCTCCTCTACCGTTGTAAGCTCTTCCACGTCAACATCTGTGCTTCAAGGTGGTGG
GGAGTTAACGAAGTACCTTAACAGTGACAAAAGTCATGTACAATTTAGATAATGAGGAAG
ACTTCAACATACTACAGTGCTAGCAAGAACACAAGCTTACATTTACGGTGTTTTTCATAT
TAGCACGGGATGTGTTATCGGTACCCGTCTCTATCGGAGTCTACTTCCAGCCTTGCTGGA
AAAATAATTGAGGAGAGAAGGACTAGTCTCACCCTTGGTATGGTGAGGACACTCATGTCC
GTGAAAGATGGGGAGCTGTCAAGGAGAGCCCAACACACTGCAGAAGATCCCATGTTTGAA
GAAATGAACCTTGAAGAAGAAGAACGGGAAGAATAGTAGTGTTGTCCTTTTCTTTTTCTT
TTGTAAATTTCTTATCTTTTTGTAATTTTATTTCCCTTTTGTAATTCTAGAGCGTGGCTT
TGTATTCTTTTACTTCCCAGGAATGGGAGGATTTAATGAGGTAGACACAAATAAAGCTCA
AGATTAATCCCAGATGATACATTACCTCATTTTTTATTTTATGCATTATTGTTGTCTAAT
GTGCCTAACGTGCCATTTTTTGCTATAAAAAAGGATGCTCACTTTCTCATTTCTCACACT
CAAACTCCATCGCATTTTCCACACACATGTCTAATCCAAATCAAAACACTCATTGGAGAT
GCTCTACCATTTGGAGGTACTACGATGAAGAATTAGTTACAGACGAGGATGGTCTCGCCG
AACTTTTTGCAAAAGTGCAAATAATGTGATAAGAAATTGCTCATGAAGGCAGACAAGACG
GCGGCTACGGCTGCAGGGCAAGGTTGAAGGATCCCAATTAGTCGGTTGTAGTCTGTAAAA
AAAAAAATCCTTTCATGGATGCTTTGTGACGACGAAGGCCCTGCCTCAGCGTCATTCTTG
CCCTCCTTTCAGTAGAATTCCCTCTCATCTTGCATAACAATGCGAGGAGGAGCAGCCGCC
TACCCTGTGCTAGCATTACTTGAGCACACAAATTACAAAGAGAATAATGCAACAAGAGCC
TACGCATACATATAACACCTCTCCATTTACTATGGTAACAATCTTCCAAGGAATCTCCTC
TCCTCTCCTCTCTTTGTAACAACCATACATACATATGTTAATCTACATACACGCCAAAAC
CATACACCCTCTCTCCCTACACTCATGATGTATGGCCCTCACAGCGGTAACTCAGCGATC
CCGCAGCTCATGCCCATCATCAACCACCACCACCACGCCGCTCCCCACCTCAGCCGCCAC
CGCTCGCCCACCCTCACTGTCAACACTTACACCGCCATCGTGATGCCCCACCACGGGCCG
GAGCAGCAGGCCCTGCAGCCGCACCAGGTAGCTCCGCCCCGCCGCTGGCTGTGGCCCAAC
GTACCGGTTGGCCGTCGCTGCCACCTCACCAACACTGCTCCCCGAGGGGCGGTCCTGCTG
CAGCATCTCGCTGCTGGAGCGGATGCCGTTGAGCGCGCTCAGGTCCAGGTTGGGGAACAC
TGAGCAGCGGCACCGCGGGCACTTGACG