Contig Data
morexGenes
Links



Map Locations of contig_40039 (5186 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40039

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55519 1 767 bp AK371068 Available Available None
MLOC_55520 1 341 bp MLOC_55520.1 Available Available None





CDS Structure of MLOC_55519






CDS Structure of MLOC_55520






Contig Sequence (5186 bp)

>contig_40039 5186 assembly3_WGSMorex_rbca.fasta
AGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGC
TGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATACCTGCACGCACGACCGCA
ACACAAAAGTAAGAATCAAGAAACGCTCGACGGACGGCCGGCCATGGCAGCGAACAAAGA
AGAGCTCAGGCTCAAACTCACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGG
TGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCT
GCATCTTGGGCTGGTGGCGGCGCGAATGGAGCTGCGGGGGTGCGCCGCCTTATATAGCGG
CTACACTCTGCTAGGGTTTCCTCTGGGCCGCTGGGCCTCTTGCTTTTCTATGGGCTGTTG
CTGCAACGGATGTGCAGGGCTGGATAGCTGGGCCAGGTGTTCCTCTTCTAGAAAAAAAAA
AGAGTTGCAAGCATAATAAAGTTCAAAAAAAAAAAGGTTCGTCTACGACACGTCGGCAAC
GATCCGTGCAACGGATAGGTCCGTTGGGCTACGCATTGGTGCTGCCCCACCCCAGCCCGG
TGAAATCTCCACCGTCGGGTACCTCACGTACCATGGATGCACGTGTCGATGTTAGATTTA
TACATGTAGTACTATGTATGTATGGATGTATGTAGATGCACCCCGCACTGCTCCCCACTG
TGTAGAATGCCTAAATGTTTTGATTAATTGCCTTGGTATACAACACCTAGCCAAACACGA
CATGAAGACCAACGATGCTCTTTCCTTTCCACCTAGAATACACCACGATGCATCCCAAGG
GGGCGGAGTCTGTGGTACGCATCGGGCCGGTGTGTGTTGTTGAGGTTGGCAAGTCGGACA
CTCGCTCTGTGCTATGTTATATGGCCTCGGGGCCTGTGTACCTTCATGTCCCGTGAACAC
CAGAATAGGTATATCGTGTGAAGTATATATGTATATTATTACTATAGCACTTTTACATAT
TCTACATCTATGGTATGCATACCACATCTTCGCGATAGCCATAAAATCGAAACCCGAAAA
ACCCGAACCCGAACCTGAAAAACTCGATAACTATATCGGGTATTAATTTTGAAAATCCGA
ATTTAACTCGGATAAAAGGTCACAGTACCCGACTAGCCCGAATTGTCTCGCACCCCACTA
AAAATGCTCCACGCATAAAGAAGGCCCGACCCAAAAACAACCACCACAAGTCGCTTCCCC
AGAAAAAACTATGTCGGGTCACCAGTCGCCAGGCCACTCGCTCGTGGTGTCGTGCTCGAC
GGCCTCCCTCGAGCCTCCACGACGTGCATAAGTGTGGCACCGTACCAAACCATCTGCCTA
ACAGCCTCGTGTGTTGTGAAGTGATGCCACCTATTCGGATAATTCGGGAAAACCCGAATC
CGAACTCGAATTTTCGGGTACCCGCATTGTCGGGTTCTCATATTGTTGGATGTACTTCGG
GTTTCATTTTTCATAACCCGAATTTTCAAAAAAACTGGATAACCCAACCAAAATACTCAG
CCTGGCTACATATGATGCGTTTACATTTAGTTGGGTCCCATTATCAGCAACAGGGCGTTT
GGTCTAGTGGTACGATTCTCGCTTCGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAACG
CCCCATTTTTTCCCATATTTTTAGTGAACCTCTTTTTTTATTGGTGGGCCTCTCTCCTTC
CTCCTTGGGCCCAACGAAGGCTGGGCGTCTCAACCACTATACGCACAGGCTGTTGGGTCG
ACTGCCTTGATCACCATCAAAACACAAATCATCTCCTGGAAAAATAAATTTGAATAAGTG
AACAAGCTCCGCGTAGAATAAAAGGCTATGTTCGGGTTATCTCTGCGTATTGTATTTTTG
TTCATGTAAATAACGTAAGGAGAACTTAGAACAAAGCGTGTAGCTAGTTGTAAGCGGCGG
CCAGTCAGCGTGGCTTCAGCATGCGAAGGATCTCTTGTAGACAAACGGTACGAAAAGGAT
GTCGGAAAATGGGACTAGCTTTGAAAATATCGCCGCAAGAAATACATTGATGAAAGCAAA
CTCGTATGCTCGAGTTATAAGTTACTCGTGTTTTTTTATGGTTAAGTAACTAGTAACATA
GTACCTTCTTTATATTTGGAAACCAAATGTATAAAGGACACAAGGGGCTATTTATCCCGT
GAAAAGAAACTCAAACTCCTCACCCATGTGCTTGCGCATCGGAGCATTGTATGACTTGCT
TCATTGTACCTAACTGTAGTTGCATTAGCATTCATGTGTTCGTTTCGTCTGTTGGATGTG
TTTGAGATGGTTGTATTGAATGTGCGGCAACTCGGTACATCTCTAACAATTTTCTATGTC
AAAAATAATCCAATATGCTACCCTCTCAAACTCGTATTACTCATCGCTCAAAACAGATGT
ACGTTTGACCAACAAGTAATATGGATCAGAGGGAGTATTGTGTTTTCATGGGACGAGTGT
TTTTCTAAGACTCGGTTCAAGTTTTCCTTGGAGTAAAACGCGATTTGCCTTTTTTGTAAT
TTAATGTGAGAAGATAGACATGATAGTAGGCAAAGCAGTTCAAAAAAACACCGATATATA
GGAAAAAAGACTAATTGTAGTTACCCCGGTGAAAAATAATGACATAAATGAAGTTACTTT
ACCATGCTTCTTTCCATCCGAAGTAAATGAAGGACGAGCTTGACCCTCACGAGAAAACCC
TTCTCGCATTAAATTAGGCATAATGCTGGACCTTATCACATGTACCTCCGACCTATACAA
GCTTGTTCACGTGTCACTATGGACATTGAGATAGCCTATCGTGGTGTTGTAGTTGAGCCA
CCTGCATGATACCGTGTTTTCAAGGAACGAGTGTTTTTCTGAGACTTGGTTCAAGTTTTT
CTTCGAGTATGACACGGTTTGCCTTTTTTGTAATTTAATGTGAAAAGATAGACATGATAG
TAGGCAAAGCAGTTCAAACAAACACCAGTACATAGGAAAAAAAAGACTAGCTCTAGTTAC
GTCAATGGAAAATGATAACATAAATGATGTTACGTTACCATGCTTCTTTCCATCTGAAGT
AAATGAAGGCCGGCCTTGACCCTGATGAGAAAACCCTTCTCGCATTGAATTGGGTGAAAT
GTTGGACCTTATCACATGGACCTCCGACCTATACAAGCTTGTTCATGTGTCGCTATGGAC
ATTGAGATAGCCTATTGTGGTGTTGTAGTCAATCCCCTACAAGATCCAATCGTTTAGTGT
CTCTTTCTAATAAACGAGAATGTTCATAGAGGACGACCCTAGGGAAGCCCCACGATCCGG
TTATGGGCATAACAATAACGACGTCTCGTCGACATGCCACTATATGTTTACTCACATCAT
CACATGCTTCTTAATACACATGTAGGTTTTGTTGTTGTCATGGTTGTTTACCACGTTAAT
CCTTTCCCGGTAACTTGTTTTACGGGTCGCATTTTTTTTCACACATCTGTTGGCAACGAA
TGTATTCCACTCCAACCGTTTCATTATCCCCATTACCTCAAGAAAATGCAGGGTCTTGCT
TGGTGATCATTGACATTGTTGTAAAAAAAACTTGGTTTTGTGACGAATTCGGAGTAAGGG
AATGAGTATCGCTCATGTAGCACATATGAGGGTGTTTGGTCTAGTGGTATGATTCTCGCT
TCGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAACACCCCCAATTTTTTTTTCGCTTTC
CCTTCTGGGCCTTTTCTTTTTTGGTCGTGGGCCTCTCAACCCGAGCTCGGCCCACGAAGC
CCAGCGCAACCTCGAGCTCGACCACGCACATAAGCAGCAGCCATGGCGGGACTGGGGGGA
AGACGAGCGCGCCAAGATTTCGTCGGCTAGGGTTTCCTCTCCTCTCCTCTCTCTCTACTG
CGCTCGCCTCACCGGCCACCGGCAGCAGCGGGAGGGATCCATGGCGGGGGAGGCCAAGGA
GCCGCAGGCGGACGGGTCCAAGCCCAAGGTCAAGAAGCCTAAGGCTGCGGCTGCCGTCGC
CCAGGATGGGGATGGGGCCAAGGTCAAGGCCAAGAAGCCTAAGGCCGGCCAGGAGGGGGA
TGGGGCCAAGGCCAAGAAGGCTGCGGCTGCGGTCGCGGCCGCGCCGGTGGCGGCGATGAC
GGAGGCGGAGGTGGAGGAGCTGCCCAAGGCCATCGTGCGGCGGCTGGTCAAGGACAAGCT
GGCCCGCGTCGCGTCCGGCGGCGAGGGGGCAGAGGGTGGGGCGGAGGTCATCGTCAACAA
GGATGCCATGGCCGCCTTCGCCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCAC
GTCAGTTTGTTCCCCTCAATCTTGCTCTGGTTGATTCCTGCGAGTAATCATGGTTCATTT
GCTTTATTGTGGGTGACGAATTTGATGCTTATTATGCGAAATGTTTGAGTGGTTTGGGGG
TTTTGGCTTATTATGCGAAATAAGCAGTACATGTTTGGGTGACCGATTCGATTTACTGGG
TGAATTCGAGTGACGAATTTGCACTGCTGACATAGTTCTTCAGTTAATTGCTCTGCTGTG
CTGTCGAGAATTCGAGACGAGAGCCGCTGGAGAGTGAACCCAGCAAATGCAGGATGAACC
GATAGTTTCAGCACAAATTAGGCTTCTCTGTCCCTGTGATGTGATGCTCTTGGGATGGTG
ATGATAGCGACACGGTTGCGGTTTTATTTGCAGGGCCAACGACGTGTGCAAGGACGGGAA
GAGGCAGACGATCAACGCCGAGGACGTCTTCAAGGCGCTCGACGAGATTGAGTTCCCCGA
GTTTGTAGAGCCCCTGAGGACTGCACTGGAAGGTCAGTGTTGTTTTCTACTTGTATCCTC
CATTCTGTTACAGTCTGCTGCTCTTGCTCGGCTGTGCCCGTCAAGCATATGTTCTTTGAG
TTTAGAACTTTAGATGCTGTGTGGATATAACTCTACTCAATATAATGTAAATGAAGTGTG
CAGTGGCTCAGTTCTTTGGATCTTCAGCTTACAGAACCCAAGAGCTTTACTGCGTTGGGA
TTTCTTTGACTGATTAATATCATTGCCAATGAGGAGTTGTATATGAACCTGGGATCCAAG
AGCATAAGTAGAAGTTGGTAATAGCT