Contig Data
morexGenes
Links



Map Locations of contig_40031 (6560 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_40031

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55506 1 2004 bp MLOC_55506.1 Available Available LOC_Os02g54160.2, FRAME:-2, EVALUE:5e-19, 13102.m12340 protein AP2 domain containing protein, expressed
MLOC_55505 1 937 bp None Available Available None





CDS Structure of MLOC_55506






CDS Structure of MLOC_55505






Contig Sequence (6560 bp)

>contig_40031 6560 assembly3_WGSMorex_rbca.fasta
TGGTTCTTTCTCTTCCTTTTTGCTGAAGGACCATCAAAACCAGCAGTAGTCATGGTGCTT
AAGCCATCTGAATTGGAAGATGAGTGTCAATGCTAAGCACAAACTTCTCCCACCAAATGT
AAATAATTTCATCATGGACATGAATTTATATATGTAAAATATGATGATGGTAATGAACAC
TGAACCATGATGTGTCAAGTTGGGGTGAAAGCATTAGTCAACCACAACACAAATGAAACA
AAATAAATAAAATCATGACTTTATAAATAAGAAAATCCAGGGTCCTGATAAAAGACTTCA
TGTTATAGACATTTCACATCATTCTACAATTATTAATCACAAATGGCATCATAGACGATG
CAGAATCAATAATATTTTTTTCAGTCAGATTCAATGATTAGCACAATAATCATTTAGACT
GATAAATGAACTAAGTCTAGAAAAATCTTCACACACACACACCTACAACCATCTAACAAG
GAAACAATTTAAGAGGCCAAGGCCTCTAACCAAAACCGAGAAATTCGGCCTTTCTCTGGA
TTTTCTACCCCTTTTGACTAAGCGGTAAGCTTATGAATCACCATTGAAGGTCACAAAAAG
TATAAATCACAAGATCGACAACCAAACAACCAAAATTGCTTCTCTAAAAGAGAGGGACAT
TGTCAAAAACAGTCTATCTACCGAACACATCAGACAAATGGAAAAAAAATATCCTAACCC
TTCAATCAAATTACTTCATGATGGCACATCCAATCCAGGATCTCTAATCAAACAAGAGTA
ACACCGCCCAAACATAGCCTTCCAACGGCAGCGAAGGGCTTGATCTCAAACAAGAGTAAC
ACCGCCCAGAATTTCTCTTCCTACCATTCGAACGATCAATCCGTTTCCGAACCAATAACA
GAATCTTTACAACATTCAATCGCTAAAGGTAACAATATGTAGATTAAAAACTAGTTCAAG
CGATCCAGATCTGATACCTTGGGAGAGGGGCCTCTTGACGACAGCGAAGGGCTTGATCTC
AACGACCTCGTCGTCGTCATCCTTCTCATCCACTCTACTGCGCCTGAGCTCCAGGTCGGA
GTCCCCGGAGTAGGCCTTGAACTCTTGAAAGTCAGCCTCGAAGTCCTCCTCGTTGTCATC
CCGACCAAGTCCCCTGCACCCACCAAGCCCCGTGAAGCGCCGGCCCCCGCCGCCGCCCTG
CCGGGGCTTCTTCTTCTCGGTCCATAGCGTCGCCCCAGTCACCTTCCGCGCCACAACCGG
AACCTTGGCATCCTCAAGGGACGCTCCACCGCACATGGTGGCCGCTGATACCACGCCGCA
GTTGTCGTCGGGGGGAGGTGCCTCGCCGGAATTGGTAAGTGGGAAGAATTTTTAATGAAT
CGGGGTAGTAGGTGTGGATTGACAAGTGGGGTGAGGCCAGTCCCTATATACGCGATGGCC
ATGTGAAGGTGCGAGGGGGCACGCGGTTGGTCCCACACGTCAGCGAGGGGGCACGCGGTT
GGTCCCACACATCAGTGAGGGGCCGCGCGGGTGGTGGAAGGCACGAGGAAGGTTCAGAAC
GAGCGTTTCTACTCGGGGAAATCTTGCGCGTTGGCCCCTTGGGAGAAGTGGCATTTATGG
TGTTGCCCTTGGAGAATGGATGGATGGATGTACGTTTGACTTTCTTTCTTTGGAGGCATA
CAAATAATTATTAGCTCAAGGTTATTGTACTACACATCTGCGTAGTACGAGTGTACTACT
ACCGTCGTACACTCTCCGTTCGGGTTTATTGGACGGGTTCTTCCAACCGATTGTTTAACA
AAAATCTTCTCATAAATGATTGTGTGTAATGCAAAGATTTTTGCAAATCACTCATAGCTA
AGTACCCCATTTATTAGCTCAAGATTGTTGTACTACACATAAGTGTACTACTACTCTCGT
TCACTCTTCGTCCGGATTTATTGGACAGGTTCATCCAACCGAATATTTAACCAAAAATCT
TGTCATAAATTATTGTGTGTAATGCAAAGATTTTTGCAAATCACTCATAGCTATATATGA
CATTTATTAGCTCCAGATTGTACTACTACTATCTTACTACTCCTGTACGGGTTTATTGGA
CAGATTCATCCAACCAAACTTTTAACCAGTATCTTCTCATAAATGATTGTATATAATTCT
AAGATTCTTGCAAGTAACTCATAGCTATTTACTTCATTTACGAGCTTAAGATTGTACTAC
ACACCTGTAGTATGAATGTATTATTACTGTCATACTCCCTCCGTCTAGGTTTACTGGATA
GGTACATCCAACCAAATGTTTAACCAATATCCTCTCATAAATGATTGTGTGTAACTCTAT
GATTCTTGTAAGTTACTCATAGTTACTTACTCCATTGTTCTCAAAGAAAAGGAAAGTTGC
TCTATTTAGTTACTAGCATGTACTTCATGTGCAATCATTAGCATTATTATAAGGTAGTTA
TATGAATTATAAGTTAGAATTACAACGTTCTCATCACATTCTTGATCTAACTATGTATCT
CGAGATCTAGCATTTCCTTTAAACTATCATGACATGGAACTTACTTCATTTTCAACCAAT
ATCTCCTTATAAATAACTCTGTAACTCTAAGATCCTTGTAAATCACACATATCTACCTAC
CCATGTTGAGTTGCTATCATGTATGTGCAATCATTATCATTATTATACAGTTAGCTTATG
AATTAAGATGAACATTGCAACTTCTTTATAATGTGTTCATGATCTAATCCTATATATAAT
ATAGATTTGAAAGAAATGTAAACTAACATGACAATGTTGCTTCGTGACTTTGTGTGTCTT
ACTTGACACCAAGAAGAAATAATTTGAGAGTACTTTTGTTTCTTTTTGAGAGGATGTGGC
TGGCCGATGCATGAACGAAGCAACAACTCTCGACCAAAACATGTCATTTTCGTACAAAAT
CTACAACTAAGACTTCTATACTCAAATAGAATAAAATTTATGTAAACAATACATATAAAA
AATAAGATCTAAGAACTTTTAACATATTAGGTGGTTTACAACATTGTATCCTAGTTAACA
ATGGCAAAAGCTGACTTTAGAGCGGTCTTTCTAGGTTGTTTGATGCAAAAATTACACTAC
GGATCAACACAAATTTGTGTTGCTGCTCTACCTAGAGATATAAAAGGAGTGTAAATCATG
TGAGATCGAAAAATGTACGAGCATAAACCGCATAATACCAGGAAACATTAGAGTGTAAAC
CATGTGAAAATAAAAAAATTATCTTGCGGGAAGACCTATCTAGTATGGTGCATCCTATAG
CCATGGGAGGAGTTAGATTCACACTAGGCAATGGTCCTAGTGTGGCCGTCACGCGCCGGA
CGCGGCCAGGGGGTCGGGTCCTAGCTCCGTCTTAGGCTATGATCTAAGCATATATTGAAA
GCTTTAACAACATAGCAAATATTTGATCCCCTCGAAAATTTAACCATATGCGGCTTCAAA
CATATGTGTCCTACTTAAAAAGGAGAAAATGTGATACTATATTATATTCTACAACAGACA
AGGATGAAAAGTAACCCTAATATGTGTATTAAAACCATCTGAGTCACATGGGGCAATACC
ATTATGGAGGGACCACTTGATGGCGGTGAACAGATTAATCTCGACAACCTCGTCGCCATC
ATCATCCCCAGCCATCCCGCCACATGTGAGATCCAAGCCGGAGTACCTGGAATCGACCTG
GAACTCCTTGGAAGTCCACATCATCGTCCTCCTCCCAAGCACGACCCCAAACCCGTCAAG
CCGCATGAAGCGCCGGCCCCCGCCGCTACCCCGTCAAGGCTTCTTCTCAGGCCACATCGT
TGTCTGTGTCACCCTCCATGTCACCGTAGGCATCTTGAGGTCCGCTAGGATTTTGCCGCC
GCACATGGTCGCTAGTACCTCGTCGTAGTCGATGGGGGAAGGAGCCTCACTTGTATCGGT
AAGGGGGAAAAGGTTTTAATGAAGCGGTGGAGCGGGGGCGTATGTTGGCAGGTAGAGGCT
AGGAGTGACTCTTATATACACGATGGTCGTGTAACGGTGGCACCCTAGACAAGGGTGTGT
GTGCTAGGTCCCACGCGTCAGAGCGGGGTTGCGCGGTGGGCGGATGGAACGAGGTAGGTT
CCGGAAGAGAGTGTTTCCATTCAGGCGAATCTTCCACATTGGCCCCTTGAAAGAAGTCTT
ATTTCTAGTATTGCCCCTTGAAAATGAATGGATGGATGGTTGACTTTGTTTCTTTGGTAA
AAAGCCATTTTTTCTCAAGATTGTACGACACCCCTCCCCTGAGAAAAAAGGTCGTACCAC
ACTCGTTTACTACTATACTATACTTATATTGTACTCCCTTTGTTCGGAAATATACTTGTC
ATAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGGTATATTCATTATTACCAATTTG
TGTGACAAGTAATTCCGGACGGAGGGAGTACTCACCGTCCAAGGTCTAACCAACACACTC
AATGAAGATCTCTAACACATGCTTTAAAATCACTCGTGGAAACTTATCCTTGAGGTTTTT
AGAAACAATACTCCATTGAGTTAGTAGAATGTATGCACAATCATCAACATTTAGAGACAC
ATTATAACCAATCACTCTAGGAGCTCTCTCATGGGATCACTATTGGCAGTCATCTATTTT
CGTGATTATTTTTTTCGAAAAGGGACACTTTATTACTTCAAATATTTAAGCATTACACCC
GGTCTGTGTATAAATAAGATGCACAGATCCAAAATATGTTCTCTCACACAAATGGAAAAT
AAAAAGGAGAGATATAAAGAAACATGTTGAGTTAGTATAACGCCTAAAACAAAGGGGAGG
GGGGCAATCCTAAGATCATGCTATCACCTATGTTGGGTAAAAGTATCCTTCGATGTAGCC
TCTAATCGTGTACACACATCCGTAAACAAGTCTCGATTCATCACCTATTGTAGAAAGGAC
CATAAATAAAGAGTCAAGATACATCCGCAGATAACCTGCATAAGAGAAATACTTTTATTG
CTAAAAACCTTATCGTTTCTACATAGCCAAAGGGACTAAATAATGGGGAGCGCTCCCACC
CTAAGAAGTGTTCTAAACATGTGATCAGCCCATGTAACCAGTTGCCAAATACATTAGCAA
CACTACAAAGAGGATAAAAGCGAGAATCTATCCGGATGGCCGACCATGTAGAATGAGCCA
ATTTGCACTGAAAGAATAAATGTTTTATTTTCTCATCATGGTGACAAAAGACATATTGCA
TACTTTCATGTCAATTCCCCTTAATAAGGTTATCTTTAGTAAGAATGACTTCGCGACAAA
GATACCATGCGAAGATTTTATTCTGAAGACGTATCTTCATCTTTTAGATATTCTTGCTAT
TATCCAGTGGCACATCAAAATGTATTAACGCTTCATACATAAACTTCATTGAGAACTGAC
CATTCCCATGTAACTTTCATCGGAATACATCATACCCATGTGATAATTGCACCATGAGAA
ACCGCTGGAGCAGGATGTTCCACGATTGGAATCTGAGTCCAAATAAATCCCTCCTGAACG
TCAGATTTGGCAGAAATGATTCCAATACCGTGGTGATAGTATCACCCTTGTGATGCACAA
TATTGTATAGAGTTGGATATTTTTCCTGTAATGTGGCATTTCCTAGACACTTATCCTCCC
AGAATCTATTTTTTGTGTCGTCTTTAATCGAGAAGGAACCATAGGAGAAGAAATATTTCT
TTGTAGCCATTATCCCTACCCAAAAGCGAGAATCCCGAGGCTTCTAGTATACTTGGGATA
CTACCTTGGAACCCACATATATCCTCCTGAGTGTTTGCCATACACCATCTTTCGTCAGTA
ATCCAAATAACCATTTGCCGAGGAAGGGCTCCATTATTAACCTCAAGGTCATGAATGCCC
TACCAGCCTTGGTCTTTGGGACAACAAACCACACTGCATTTAGCCAATCTATATTTCTTT
CTCTCGCTATCTCTTTGCCAAAAGAATCTTGATCGGAAATAATCCAATGATGTAAAACTC
CTTTCGGGAACTGGAAGAAGGAAACCATATGTAGTTACATATTACTTAGTACTAAATTTA
TGAGGATCAATCTTCCGCCCATAGTAGGGATGGCAATGGGTACCCATTACCCACGTACTC
TGTGGGTAAAAACCCTATTAGGGAAAGGGTATGTGACAAAAATTTATCCATGCGTATATA
AATAGGAAAATCTGAAACCCATCGGGTAGAGCGGGTAAGGGTATGGGATCATATAACCCA
CACCCACATACCCATGTACCCATATAAAATATTTGTAAACTCATTATTATCTATACAATC
TACACTATATCAATAGTTTGTGAAATGAAAACGTATGACTATGTGTTCTTGTTTATGACT
ATATGATGTTGTTTATAAGTATATGTGGTTGTTATAATCTATTTTTGTAAACTATGATTA
TATATTGTTGTTTATGACTATAAGTTGTTCAAATTGTTGTTGATTTGCAAACACAGGTAA
TTTTACCCGCGGGTACCCGT