Map Locations of contig_400189 (3696 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_400189

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55491 2 2016 bp MLOC_55491.1 Available Available LOC_Os01g34630.1, FRAME:-2, EVALUE:4e-154, 13101.m03495 protein retrotransposon protein, putative, Ty1-copia subclass, expressed





CDS Structure of MLOC_55491






Contig Sequence (3696 bp)

>contig_400189 3696 assembly3_WGSMorex_rbca.fasta
AGACGCAAGGACGTCCAGGAATTGGGCTAAGGCAGGGGCCAAAGGGCTTAGAGTCACCCT
GCCATCCTCCTGGAACGTTCATTGATTCACTTGTAACATCATTGTACTGGCCTCTTAGGA
GGATGTTATCCCCCTATTTTCAATGCAATGAAACGCAAAGGCTTTTTGCGTTTTCTCGAA
AAAAAGAAAACAAGAAAATGTAGAATAAAATAACTACAAAAATAAAATTAATTAATTAAT
TAAAAAGCGAAATAAATCAAAAAACAAAAAGTGCCAAAAAATAGCATGAAAGAATATGTT
TTTGTTGTGCCCGCCTGATAGAAATGAGGGGGCATGCAAAGGATTCTTCCTTCTTGCAAA
GAACAAGCGTTAGGATTTCCCTCTTGCAGATGAATGGACTAGCTCACATCCTTAACCATG
CCCACACGGGGGGGAGGAGGTTCATGATATTCTTTTCATGGCTTTTTTGTTTTGATTAAA
AATATAATTTGTAGACCATGTCAGACGGAAACATATTTTAAAACTTGTATAGTAGAATTT
TAGAAAAGGTGTTTATATAAAAATTTAATAATATTTAAGAAATACATATGAGAGCAAAAA
GGAAAAGGAAAAGGAAAAAACAAAAAAAATGGACCAATCAATGAAGCTTATTCTTCATTT
TTTTAAGGTTGGGATACATTACTTTTAGGAGTAGATGGAAAAACTGAAACACCTTCTTGA
CTCCTTTGCCGGCTGTTAATAAATCTAGGTCCAGGTGTGCATACATATTTAGCATGAGTC
TACCTACTTCGCTGAAAACATGACCAGATATGCACTGGAAATCACTTAGCTGATATGGTC
CTGTTCCAAGTTTAATTTGTTCTGCAGGATCATGGCATGCGTGTACTGGACTAACAAAAG
TTACAAAACTATTATTTTCTGGACACAAATGTGGAAAAGAAAATCTAAAAGAGTATGAAT
TAAGCAGAGGAGTGAAGTGCTTATAAGTAGCCTCCCAAATGAACTTCATCTCATTCTAAT
GGGTTCATAAGTAGCCTCTCAAATGATGCCTGGTGCAGCGCAAAACAACAACTACAGCTC
ATTCTAATGGGTTCATAATTAGCCTCTCGAATGAATTTTGTGCTTTTGAAATCACCGAAA
CAAGAAGGTGGCTGTCAGGTATGGCAATACCATTTCACTTCGACGTCGACCGATGAAGAG
GAGCAATAAATTAACTGCGATTGCACAGATAAAATGCTTCCGAAGCACTGACTAGCTGAA
TCTCAAATCAAATCAAACGTAGCTCACAAGCAGCAAAACCACACAAGGTGCATTACAAGG
TAGCAGTAATTTGAGCCCCAAAACAGACCACCATGCCAATTCATCGAAAAAAGAAAGAAA
GAAAAATAGAGACCACCGTGACAAAGATTCAGATAAGCAATCATGCATTTTAAGATCTTT
CATAGGCACATCAACAGCCACGCTACTAATCGAAAAACTACCATAGTAGTAGTAACCACC
ATTATAACTTCAGACAAGCACTGATTAACAAACAGCACTTAACAGAGTAACAAAGTTCAG
ATAGATAGTAGCAATACTACTAATGCATTTCACGGCTTGTAGGGAACCAGTGAACACTAT
GTCAACCACCAAATATACCACCATCAGATAGATAACCCTATGAGCAGGTTGCAGAATAAC
CCGGAACAACAATAACTATAGAATGGCCAGATAACTTGGGAGCAGCTTGCATATATATAG
CATTATGACACATTCCCATCAGTCCTGAGGGAATAGCCATGCAGCCAGACGCATCTCATC
GCAACGTTTCCAGAAAATATATGGATGAGGGAAATGGACAGCGTTGGATCTCATTCCATA
GCCGCCGAACGAAGTGTCCTCATTGTCGTAGCAGTAGTCCATACGATTCTCCTCATCATC
ATCCAAGAAGAAGATATAATCACCCAACAGCCCGTCGTACTGAGACACAGACATGGCCCT
GGAACACCTTCGCCCTAGAAACAGCAGTTGGTCAGCCCCCACGGTTGACACCTCGACCCA
CCGTGAATGCTCGAAGTCGGCCTTGAAAACCTTAAACCCAGTCAGTCCAGCAACAGCTTC
ACCAGGCTCTGCTCCAGGTCCAGGTACCCTGCAAATGATCGTCCTTCGTGCCATCAGCAA
CACCCCCTGCGATTCAACCAGGTAGAGCTTCTTGCAGAGCATGGTGTTGTCATCGAACAC
AACTGAATACAATGGAGGAGAATCACCCTCGATGACTTGTCCAATCCCAGAAACCTGTGG
ATCGCCGGTGCTATGGTCCTGGCTGATGTTCACCACAAGGAGGTTCTCGTCATTGGCAAT
GGCGTAGAGCTTGCCCTGGTAGAAGGCCATGTCTTCGAACGCCTTACACTGATCGTAAGC
ACGCACTGACCACGCCGAGGCCCCTCGCTGGCACAGTAGAATCTGGCTGGTGTGTCCAAT
GCCAACCAGTGCAGCAACAAGGTTTGGCGAGCACAGCATTATCTTACTTAGGTGTAGCTG
TTCCGATGTATTGATATGCATCCATGTGACGTAAGGGTCGGCAACGTTTGACCCATCCTC
GAGTGACCACTTAGCGACTGCATTTGGGGGCCGGAGTCGGATGCTGGAGAGAGCAGGGAG
CGTGAAGGAGTCCCTGGAGAATGGATTGACCAGGACGCAGCCGTCGTCGCGTGGGAAGAC
GAGCCAGCTGCCACAGACACTCTCGTACCCTGCGAAGCCGCAGCCAGGGAAGGGATAGCG
CTTAGGGTAGAAGATGCTGAAGAAGGTGCCGTCTGGGAGCGCGAGCACCGGCAGCGATGG
GGGCAGGCCCTTCCGCGACGCGGCGGCACGCCACTGCGGGCACACCAGAGCAAAGGCGGC
GCGGTCGGCGTACTGGGCGAGCAGGCTGAACACCAGGCCTGCTATGTCCAGCGGCAGGTC
TAACCACGGCGACCGGTCTGCTTCCATGAGTCCTGCAAAGAAGCAAGAACAATCATCCAA
TGCTATCGTGCTTCGAACATCGCAACCGGTCAGTCGGTCCCAGACGCGGCAAGCAGCAAT
GCGTCGAGCACCTGGCGTGCATAGCCAGCGGACGCGGCGGGAGCAGCGAAGAAAACTCCG
GTGAGCGAGCAGAAGAGTAGGCCGGCGTGTGAGGGGAGAAGGAGGAGGTGGGTACCGGGG
GGATCGCGCCGGGGGCGGGGTTGATTGGCCGCGCCGGGGGCGGGGTTGATTGGCCGCGCC
GCGCCGGTGAGCAGTCCGCCGATCTGGCTGCGGTGCGATTGCAGTTTTTCTTTTCTTTTG
AGGGAGTGCGGTGTGGAAGCCCGAATGGGAGCGAGTGAGTGGTGACCAAGACTTTATATG
GCTCAGCGTAAAATGCAGGAAAAGACTTTGGATCAACCGGCTGATTTAAAGGCCCGCGTC
AACCTTGCGCTCGGCATTCCGATGCATCCTGATTTCTCCTAGCACACTTTAGCGCTCGCA
CTAGTACTTGCAAGTGGTTGTTTTAACTTTGCAACACTTCACGTGATAGTACTAAAACTG
TTTCTTTTGTGTATATTGTCTTGAAAACTATATTATTGTGATGCAATCTGATGTCATGAG
TGTCGTCACCGTGTTGGAAGGCGGTAATGTGGGGCGCTGAAGTGTTGCAAGAGTTTCACC
GGTGCTGCAAGCAGTGACGGAGCTAGACGGAATATG