morexGenes - Barley RNA-seq Database

Contig contig_39959
Source Contig contig_39959
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39959 (8802 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_39959

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55429	2	2930 bp	AK366247	Available	Available	None
MLOC_55428	1	989 bp	MLOC_55428.1	Available	Available	LOC_Os01g27190.1, FRAME:+3, EVALUE:5e-80, 13101.m02828 protein C2 domain containing protein, putative, expressed
CDS Structure of MLOC_55429

CDS Structure of MLOC_55428

Contig Sequence (8802 bp)

>contig_39959 8802 assembly3_WGSMorex_rbca.fasta
GGCGGATTAGGGAGAGAAAGAGTGGGAATCGGGGNNNNNGGCAGATTGGGGGCGTTAGTA
GCCGTCCTCTTTGCCGTCCGCCATGTATCAAGCTGACGGCACAGATGCCTGGAAGCAGAC
GGCAAAGAGGTGGGGATGTGGGGGTGGAGACGGCCGTTAATCAAGAGGGGAATCCAGCCC
TTTGCCGTCAGCCTTGTTTTTGTTTGCCTTCTGTCAGCAGATGGCAAAGGGCTGGCGCCT
CTTTGCCGTCTGCCTTTGTGTCCTTTGCCATCTGCCAGCTGACGTAAATAAAAGGTAGAT
GGCAAACCATCTCTATGCCATGAGCCTCCTCTTTGCCGTGTGCCACGTGTAAGCTGACGG
CAAAGAAGTTCTTTGCCGACCGCCATCGTACGGCAAAGATTAGGCACATGGCAAATTATC
TGTTTCCAGTAGTGGTTAGGGCCCGAAGGGAGGCAAGGGGGCATTTGAGTTCCCACTCCG
GGTCCACGGAGACTAGGTCCAAAACCGACATTGTCGGGTTCGCCTGACGGTTGGTCCTGG
TAAATCTGGCGCCAACCTGCTCATGTAGGCCGAGGTCCGCGATGCAGTCATTGAAGAGCT
GCATGCGAGGAAAGTTCATCCGGCCATTATTCTTGTCTTGGACACAACGGATGAGGTTGA
AGTCACCTCTCACCACCACCGGGAGAGTAGCATAGGAGATCTTGCAGCGCAGCTCCTCAA
GGTCACTGTTGTAAAAAATACTGCTCTATACATGCTCAAAGTGATACTAGTACATTCATG
GGTATTGCATTAATGTTGATTAAAGTGGGTTTCAGATTAGTGCGGAGTAAGAGTGATTGC
TTAATTTAGACATATTCGATAACAAGTGATTGCATTTTGAGGTGCAAGATGAACGCCGGG
CCACACAGAAATAACACCTAAATGGAGTGTTGAGCCACTAATCTAATCTATTATTAGCTT
TGGTTTGAATGGCATGCCAACCATAGCCACTTCCCTTTAAGTAGTAACACCACACCAATT
TTTGAAGTTGAGGGGACATTTCCAAAAAAGGTTCCTCCTCCTCCCCTCCTCCTAGTCCAA
CATCCCTCAACCATCTTGATTCCTGGCGACGTCGGCCATGGCATACAAGAATCTTGAGGT
AACGCTGATCTCAGCGAGCGATCTCAAGAAGGTGACATTCTTCTCCCGGATGCGGGTTTA
TGCCGTTGCCTCCATCTCCGGGGCTGACTCCCTCATGCCTACCCATGGCACCCACGTCGA
CCACAACAATGGCCAAAATCCCACATGGAATGCCATGCTCCACTTGCCGATCCCTGCATG
TGTTGATACTCGCGGGCTCGCCCTACATGTGTTGCTACGCTCAGAGGCTTTTTTCTTCGG
CCACCGTGACGTTGGTGAAGTATTTGTGCCCCTTAATGATCTTCTGGCCGGCACAGGTAA
TGGAAATATCGAAAATACTATGAGCTACCAAGTGCGGCGACCAATGTCTGGTCGTGCCCA
CGGTGTTCTCTACTTCAGCTACAAGTTCACCGACGTCAGAGCTTCTTCAACAAGCGCTAC
AGGGAGCAAACAAGGCCAGTATGTCAACTACTCTTGGGACTCTGAGGTGGCAATGCCCAA
ACCCATGGTGCCCATCACCGCATACCCGCAACCACATGCCACATTTTCATACCCAAATGC
AGTGTATCCACCACAGCCATATGGGCGTGCGTCTCCACCACCGTACATGTATAACACCGC
TCCGGCACCGGCAACAATGTATGGGTATGCACCAGCAACTATGGCTGCACCGGCAAGGCA
CGCGGGAGGGATGGGAATGGGCCTAGGCCTCGGGCTCCTCGGCGGCGTGGTTGGCGGGAT
GATGCTCGGTGACTTGGAGTCTGATGCCGCCTATGACGCTGGGTTCAACGATGGGATGAG
TTTTTAGTAAGCGCAATTCGGACTATGTGTAAGGAGGATGTCCTTGTAAATCTGTAATTG
TCAGTTGAAAATGAGTGAACAAAGTGAAATCATCATCATAATGTGCAAGTCTTTTTGTTT
CTTATTTACTTCAACTTGGAAGGGTTGCAGTTAAGCGGATCGAACCACGCGAAAGTAGCC
ATATATTTCTACACCTTTCTTCCATGGTTACACGACACCAACACATTGCAATTTTTGTTG
ATAGCTTATACCAAGCTGACCACTTGGTGACACCAACACATTTGAGGTTCAACCGTAATT
CAAAAGAAATTAAAACTCTGTTTGGCTCCAATTTGGAAGAGCAAAATATGCATTTCGTTG
GAACTCTGAAGGAATTCCTGCTTCCAACATTTGCTCGCTGATTTGCAGCGCGATTAGCGC
AAAATTCGCACTGGGATTTCGTTGGAACTCTGAAGGAATTCCTGCTTCCAACATTCGCTG
GATGGTTTGCACATTAATTAGCACAAAATTCGCACTGCACTTCAGTTAAGCACGGAGATT
GATTAGAACATTGATCAGACTGTATACTGATCACGGATGTTGATTCAGAAAGGTGCAAAT
TATGTGCATGTAACTTCCACACTGCTTAAGTGTATTATTATTCTTCTAGGCAAAGTTGAC
GAAATCTGATCAAACTTGCCATAATCAACCAACACCTACTTTTATCTAGTCCCTCTACTT
TCCATAACTCATAAGTACAAGACTTGCCATGTACTAAATCAACACATTCAATACCTCCTT
TGATCTAGTAGCTCTACTCATGAGTATAAGAACTTGCTATGTACTGAATTAACACACTTT
CCGCAAAAAGAACTTGTGGCTGGTTTGTCTACAGAAGTTAAAAATTCTCCTTGTGGAACT
CGAATTTTGTGTTTGTCTTTCTCGAGAAATCTTGTGCAAGCTCACGCAGCTCCTTTGTTA
GCACCGGTGCACCGCAGTAGAATACTCCTGTGATATCCAAGAATCATAGAGTAAATACCA
ATTCAGTAAAGTAAACGCTATGTGTGTCCATAACAGTGTTGATTAATCGATCATGTAATC
CTTAGAGCAAGAAAAGAATAATAACAGAGCGGGCTGCTGGCTATATCACATTGATATGTT
GTCTATGGGTACTCCTATAGCCTTCTTACATAACCCTATTATGTTTGCCGTTAAACCTGA
GTGGTAAAGGTTGAAGCGTTAAGATCATGCCTTGCCTAATATGAGTATATGACCAAGTTA
GTTAAGGGAGAATATTTGAGGATGACGTCTTGGCGCCCAAGCTTGTCCACACCCGACATG
AGCAGTAATTAAAAAAAATGCTGATTTATTTTATTCTGAAGATGCCGAAGTGCGCTACAA
GTGTGCAAAATTGATGGACAATTTGAAGTTACTGTACATCAGGGAGTGGATGAGCATGGG
CTCATTGATGGATTATAAGAATCTTATGTGTGTATACTGAGGTCAATTAATTTATTGTGA
GGAATTTGAGATACTTCATGCATATATTAATTGATAGTTCTATCTAGACTTTAGACTGGT
CAAAATTTCTTTAGTGGTTGCAGCCATCAGCAAGTAACAATGATGGGTTGACACCTAACA
TGTGGCATACCTATCCGCTGCTTAATTTTGCATACCACTCCCAAAATTTGGTTCAACAAT
GGAATGGCTTTATGTGCTCAGCATTTACTGTTGGGTGTAGCTATCAGCAAGCAACAGTAA
TTGGTTGGTTCAACCTTGACTACTCCCTATCCATGCCAGTTCAAGTTGAACACATACACC
TCCGATCCTGACAAGGATCATGCATGTCCTTGTCAACCCGGGTTCTCCATAGAAAGTTAG
GCCATCGCTATACACTCGAGGTTCAGACTAGCACCAAGTCTGGCAGGAAGTTCCCCTCAC
AGCGACCCATAGGAGGAGAAGTCGTACAAGCGTAAACCAAATCGATATCGACTTTCACAG
TCTCTCGGACCCAATTTTGACCATGCATGTGTCAAGAAACTACCGAGAAAGCGTGAAACT
TAACGTGGTGTCCATGATATGCAACTTCCCGAGCATGCCAGTTATGCTGCCAACAGATTG
AGCATGGATGTGTGAAACAAAGTGAGTTTGGTACTTACCGACACGCTGTTCACGGTGGTT
GAGGGCGATACGCTTGTAGACGTTGCGCCAATTTGGTCGGGCAAAGTGGGTCTTGACACG
GGTGCCGGAGACGATGTCGACGCCGTTCTTGGCATGGTTGAGGGACTGGAGCATGGCAAT
GAGCGCGGACCGGGCATCCCCGTCCTCGTAGACACTGGTGCAGTAGTTATGAAGCTCGAT
GACACCCTTCTTGTCCGACTCAGCTATCTCGTCCATGACGCCGCGGAACCACTCAAAGGA
GCCTTGCTCCCGTGTCACCCAGTAGAAGTAAGCGCGTCGGGTCCGGAACGACGTCGAAGT
GCTTGCATCCCCGGGGTTGCCAGACTCAACGTCACCTTCGAGCCGCTTCATGTTGTTGAT
GATGTCCTTGATGATGGAGATCATGGGCGTGGCCCCGATGCCCAGCCCCACCAGCAGCAC
TATGTCGTATTGCTTGTAGTCCTGCGCGGGCGCGCCGTACGGCCCGTCGATCAGCACCTT
CGGGAAGCTGCAGCACAATCACATTTTGTAAGATTACATTAGTTTGCAGTAATTTAGTAC
TATTTGTGTTAAAACCGATTGACATGATCAACACACCAATCACATGGGGGAAAGCACGTT
GATAGCATACATATTTGTTTAAGCAATGATGCAACAACCGGAAGGGAGAATGTTCTTTCC
CTCCACATGACTGCTCTTATTGTATCCTCAACTGATGGCCGGCAATCCTCCACTAATCAA
GTGGGTCTTGCCACTTTGCCAGTCATTTCTCCACCCACCCGTGAGTTGCGCCTTATCCTA
ACCAAAACTGAATCAGCCATAATATGGCTGCTATGCAGACCAATGACAAAGATCACGCAT
CGATCTTGTAGAGGTCAAAACTACTAAGCAGAGACTTTGCCATGTGAAACAACCGACTCC
GGTCTCGACTGTACGTGGATGTTTAACGTAAGAAACAGGCAGAAGCATGACAGTTGTATC
TTAGTTGGTCCATGCAAAATTTGCTCTCTATTCTAAGTTCCGAGAGAGAAAAAAAGAAGT
CAAGAGGAGACGGCTAACGACTTGTAGTACTAAAGACTACTACTCCCTCAGTTACACAAT
ATATAGTGCACACATCTCTATTTCAGAAGTTGAATTTCTTGAAGAAACATATATATCTAC
ATGTACAATACCGAACATATTTACGACGATATTTTATGTACTTAACATTACAGGTATACA
CTAGTATAATTTTCTCTTTTGGGGGGATTAAGGAGCATATATCCCAATTTTATCGTACTA
AATCAGCGACAGTTAATATGGATCAGAGGGAGTGTAATAAATTTCTCTAATTGAGCTGAG
CTCAATATATAGTACTACTAGAATCTTTGAAACAAGCCGCACGGGGTAGGCATGTGTGTG
TGTGTGTGTACGCGTTGGTGGTCATCCACCACCTACCGCCTGACCACTGAGGAGAGAGGC
AGAGACCGGTTTGGGTGTTACGACCCGACCCAGCAATGCGCGTCCCTTTCAGTCCACACG
TTAGGCTGGCCAGCAGATTGGACCACGCCAAAGGGGACCGGACCGGACCGCACCGCACCG
CACACAGAACAAAATTTCCAGCCGGAAACCGTTTTGGTGTCAACACAACGGAAAAAGGAA
AGAGAAAAGAGAAAGCACCTCGGGTTGGACATGGCGCCGTCGCGGTCGTACTCGGCCCGG
AGCAGGCCGCTCTTGCCCTCCGTCGGCGGCCGGCAGACCTTGGAGAAGACGTTCTTCAGC
TCCCGCGTCCAGTCGCCCAGCGTCCTGATGTGCACGCTCACGTAGTCGTCCTGTGGCGCC
GACGTGATGGAGAACGGGTGCCTGCACGTCCATGTTCACGTTCGTTTCATCAGGTGCACA
ATTAATTAAGACCTTGATGAGCTCATCTAAATTAAGTAGGAGTACTAGTATACAATAATT
AGAGTTGGTAGGGAGTAATTACCATTGGAATGGCGAGACGGCGGCGCAGTTGACGAAGAT
GTACTGCCCGCTCTTGTACCTGAACCCTTGGGGCTTGGAGAAGTGCAGCGACAGCACGTT
GCCGGGGTACACGGCCACCTTGAGTATCTTCACCGGCCGCACGCTCGACCGCAGCGCCCG
CGTCAGACGCTCGCACGCGTACAGGATCATCGGCACCGCCAGGTACATCCACGTCTGCAG
TTCCACGTTACATTTTTATTTTACAGATGTCAGTCAGGTGTCACCACTAAGATATACCAG
TTCACGGTGAAGCATTAGAATTACGTACCGACTTCTTTTGCCACTTCTTGGTGAGGTAGA
GGAAGTGCCCGTGCACAATGAGCAGCGCGTAGACGATGATGAAGAGGTGGTGCGAGTACC
AGAAGGCGTTGAACCCGGTGAGCCGGTTGAGCGGCTTGGGGAGGCTGAGCCTGCCGCGGC
GGAACCACGGCGTGGCGAGCGTGAAGGCGATGGCCATGAGCACCAGCATCACCAGCCCCG
TCCACCCCTCCGTGCCCTTGACGAACCACCAGTAGTTGGGCGGCTGCTCCTCGCCGAAGA
ACCGCTTCATGGGCTCGTACTCCTCCTCGGTGGCGCGCAGCAGGCGCGGGAAGTCGCACG
TCAGATGGGAGATGATGTGCAGCCCGGCGCCGACCGAGATCCCCGCGGCGATCACCTTGT
GGAAGTTGATGTTGTCGTCGAACGGCACGAACCGGCCCGCGGCGGTGCGGTTGCGGAACC
ACGTGATGGTGTTGCGGCACACGGGGAGCAGGATGAGCGCCATGTTGAACTTGAGCATCT
CGGCGCCGCCCTTGGCCACGCACACGCAGTAGCCCATCACCTTGAACACGGCACGCTCCC
GGTACTGCATGAACTTCCATGTGAAGAGGCCCACGCAAATGCAGAACCAGAGTAACAACA
CCCAGCAACGGCGCCAGTTGTCCTCCAGGAAGTAGCTGACACGGCGGTACCACCGCCGGA
GCGGGTTGGGCTCCGCCGTCGGCCGGAGGTGCTGACTCAGCATCTGGCTCAGGTTGCGGC
TGTTGGTCGTTCCGATCGCCATGGACTGGCTCGGCGCCTGCAGCAGCAGCATCTCCAGGT
TGTACAGCTGCGAATTGATCGGCAACATTGTAATTAGCTTCATGCAGCACCACCATCGGC
AAACACAGAGCAGGTGACCAATGCTGCACATAAACAGGGCAGGAGAACCACGGCATTATG
AATTTTAATCACCTCGATGTAGCCGAGGTTGTTGGGGTCGAGCTCCTCCATGATGAGCCG
GGCGTACTCCTCAGACTGGTCCTTGACCTTTGTAAGGTTGTTGGCCGTCGCGCTCAGCGT
GATGATCTGCAGACCAGATTGCCAGAATAACCGCAAATTAGAAGGCCAATCATCGGCAAC
TAATCAGACCTCCTATAATGGGAGAATCATAGCAAGGGTCATGCGTACTATCAATTCTCT
TGAGGTGGTACACAACTAATTTTTTTTAATATTATATCATATTGTATATACAATAATAAT
GAATGATGGTATGAACCATAGTGCAACGAGAAGGCATGTCGAAATACTAATATTTAGCGA
TGATTGGTTTGGTGAGTGGGAACTTGCAGGACAAGGACACGTCCAAGTCGGCATAACGTG
TGGTAGTGGATGACACCGACAAGCAATGGCAATCAGGTGAAGGAGAAAGTCGCAAGTACT
ATTCAAGTACAGTCACTTATCGTCGAAAAATCGGCTATTTTAGTTTGGAGGGACGCCGGA
ACATGAATGAAGGAGTGAAAGAGTACAGGTGGGAATCTGACTAACCTCTTTGACCTCCTC
CTCGGTGATCCTGCCGTCAGCGTCCTTGTCCACCCTGTTTGTTGATTAATTAGTGGCGTT
AATTTGTGAATTGATGGTTCATTTACTAGTCGAGATAATTAAGTGGTTCGTGTTAATGGA
CGAACGGTTGTAAGTATGAGTAGTCAAGTGATTAATCAGGTGGTTTATGTTCATAAATGC
TTACATGTCGAAGAAGGTCTGCAGGCGGCTGTCGAAGCTGGTGTCCGAGATCTGGTCCCA
GAACTCGAGCAGCTCCGCCTTGCTGATGCTGTCCCCGGCGATGTTCCTCCGCCTCGCCAG
CGCGTCGAACAGCTCGCCGGCGAACGCCAGCTCCTTCATCCCTGCAAAATCGATTTGATT
GATAGACGATTAATTATTAAGCAACCATGAATGAACGAAGGAGCGAGTAGTATAATTTCG
ATTGATTCAAGACGAAGAGGTTGAGTTGTCGGGCGGCGAGGTGGTTACCGATGCACTTGC
CGAACTTGGAGCGGTGGAGGAGGCCGTTCTCGGCGAGGTCGTCGAAGCGCTTCTCGACGG
CGGGCCAGCCGGCGGAGCCGTCGGTGCGGCTGATGAACTTGAGCCCCTTGAGCGCGTGCG
CGGCGGCGGACTTGGACTTGTCGACGCGGCCGGGGCCGCCGGCGCCGCCGCCCCCCCGGC
GGTTGACGGAGGCGAGCCGCCGCAGCTCCTGCGAGACCTGCTTGATCCGCGTGGAGGCGT
TGCGGAGCACGCCCTGGCCGTACGAGGAGGAGCGCTTCTCCAGCGTCTGCGCCAGCAGCT
TCACGTCCGAGTCCTCCCCGCCCGCCGCCGGCTTCACGCTGTGCACCGCCACCGAGTCGT
CCCTCACGTCCAGGGTGATCTCCACGTAGTCGTCGTCGTCGTCGTTCCCGCCCCCGCCGC
GCGGCGCCCCGCGCCGCGCCCGGGGGGGGGGCGCGCCGGGCC