morexGenes - Barley RNA-seq Database

Contig contig_39910
Source Contig contig_39910
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39910 (7431 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_39910

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55380	1	2401 bp	MLOC_55380.1	Available	Available	LOC_Os02g20360.1, FRAME:-1, EVALUE:0.0, 13102.m02277 protein tyrosine aminotransferase, putative, expressed
MLOC_55379	1	123 bp	None	Available	Available	None
CDS Structure of MLOC_55380

CDS Structure of MLOC_55379

Contig Sequence (7431 bp)

>contig_39910 7431 assembly3_WGSMorex_rbca.fasta
AAAAAAAAAAAAACTTCAAAGATCTTCGACGCCAATGTAACTTCACTAACATAACATTCA
CTATGTTTCGTCCAGGCCACAACAACCAGAACATATTCAAGGAGATGTTGACTTCTATTC
ATAGAGAACTAAAAGTTCCATTTTATTGAAAGATATAGATGGGGATACTGGGAATGATTT
ACAGCTTCAGTCAGATATACAACTAGCAATCATCGCTCGAATTTCTCTTCTTGTTCCTTT
GACAGAATGATTTGATCCTTCCGAGACCATCTTGAAGAGAAGATGGAACACAAGCAAAAG
TAATGCGGACCCAGTTTGCCATTCCAAGAACACTCCCTACATTTGAGAGGCACACATATA
TAAGTTTTGTTTTTGAGAATAGTCACAAATATATAAGTTGGACTACAAAAATATCTCAAA
ATAGAACCATATAAATTTATATTATTAACAATTATTTGAAACATGTGCTTGCTATTTTTT
TGTGAGGAGCACAACATGTGACGAAGGACATCAGGTCAAGAAAACAAGGAGAAGTACATG
ATATCTAGTCTTCACAGAATATTGTGTTAAAAAAGTCTTCACAGAATATTCTAACACTGT
TATACAATTTCTGACCATGATATGGTAATCATTTATATGTATAGTCATCTCGGAAATTGA
TAAGAACTTCATATACAGTCAAAAATCAACAATGGATTCCTACCTGGGCATAAGATTACT
GATTCTTCTTTTGCGAGCTTGCAGCAAAAATCAATGTCATCGTCTATTTCCTCCAAAAGA
TGTAAGTTCAGTTTCACCTGTTTACATGGAAGTTAATACGGAGTTCATGGTTACAGAAAA
ATAATCAATCTTTCTAGAAACTAGCATGGATATTTGTGTAATATGATTTGACCATTAACA
TTCCACAGTATAACAAAAAGATGGACACAGGATATCCAGATGATTAGTCCTAGCATAACT
TTAGCTCTCGTCATTATTCTTAAAATACATGCATCTTCAAAAATATGTACGGAAGAATGT
AATTTGAATTTGAATTTGAAGTAATTATGTTGGATGCATTTCGGTCCCAGATTAATCCTA
TATAAATAAGTTTATGATTACTGACACTCCCTAAGATTTTTTTACTTCACAAAATAGGCT
TACCATGACAAACATTGATCCTTCTGGCTTGTGAGGACATGTAATGTATTTGTTTTCCTT
TATTTGTTTGTAGCATATCTCTGATGATTCCTTTAGCAGACCAATAATCGCCTTAAAGAA
ATCTTCCTTTGTGTTCTCAAGAATCTGAGGAAGAGCTGCCTGAACAATTTGATAGTACAA
AAAACCACAAGTAAATCGTGTGAATCACAAGAGAACAATACCATCAAGGATATCAAAATA
TGAAATTCTTAATAAAATGGTATACTCATAGTACAATGTATCTATTTTCTAAAAGAGGTT
CCAACATACTGCATACTTGACCCAAAAGAATATGGCATGCCCATAGTGCAATCATGTATA
TCTTGTAAGAACAGTGGTTATATTCAACAGTAGGTTCAGTTTTTGTATTTTTTTTATTTT
ATCGGATCAAAGCAAACAAAGGTAAAATAACTACAAGTGTATGTGTCTGACTTTGACTTT
CAAACTTAATGTGAAAAAACGGTCACTTGACATGCACGTGGGCTGCCTACAACATAGGGA
CCGGAGCAAAATAGGACAAGGAGGAGTAAATACCAAAAGACTTTATTTCTTGAAACGAGG
TAAATACCAAAGACTGACCTGAATGAAGGTTGCTGGGTCTGTCGAGACATTGAGGTAATT
CGTAATGGATGTAGAGATCTACCACAAAAATGTCAGTACAAATTTAGCAAATATATTGTA
CAGTAGTACTAATTAATCCCCGTAGTAGCATTTGAAAAGAATGATATAGAGATTTAAGTA
CCTTAGTTTCCTGTAAGATCTTTCTGGGGTCGTACACCGCTACCCATCCAAGCCGCCATC
CAGGCACTATCCATGACTTAGACAGAGACCCTATGGACAGCACAGGGGTGATGTGCCCAA
ACACTCCCATTGGGATGAACGGGGCGCTGCCCAGAACCAGCTTGCCGTATACCTCGTCAG
CAATCACCAATATTCCGAGCCTTTTCGCCACCTCCGCGACCTAATTGAGCAACATCAGTC
AGTATGCGATTGGCAAAAAGAATTCAGCAGGTGCACTGAACTGAATCCATATTCAGCAAG
GCAAAGGATGTGAAACCTTGGACAGATGGTCGTAGGAGTAAACGCTGCCGCACGGGTTGT
TGGGGTTTATGATGACCATGGCGGTGGTGTTCTTGTCGGCGATGGATTCCAGCGAGTCGA
TGTCGATCTCCCACCCCTTGTCGGGGATGAGGTCGAAATGCCGGACCTCCAGCCTGTTGA
ACGCGGCGCGCGCCTCGTAGTTTGGATAGCCTGGCCTGGGGAGCAGAATGTTGGCGCCGG
CGGTCTGGGCCAGCACCGGGATTATGACCTCGATCGCCTGGGTCCCGCCGGCGGTGAGGA
AGACGTCGTCGGCCGATAGCCTGTACGGCACGCCCTGCGACAGGTGCTCTGCCACGGCGC
TGTGTTTTTTTGTTTTGTTTGGTATAAGGTGGGAGAAGGTCAGATTTCTCAAGGGCGCGT
AGGGAGGAGGAAGGAACAGTGGACGGACGGACACGTGAAAGCGGCACATGCGCATGCATG
GATTGCCGCGCGACACGACACGCGAAAAGGAAATTGTTCTTGTGTTGTTGTTGTTGTTAC
CTTCGTGCGGCGGGGAGGCCGACGCCGGCGGGGTAGCAGTTGAACTGGCCGGTGCGCAGC
GCGGCGGCGACGGCGTCCTCGGCCTCGACGGCCGTGCGGAAGGCCGGGAACACGGACGGG
TCCCCGTGGGCCAGCGGCAGCACGGGCCGCGGCCCCTTCTCCTGCACGCTCGCGCTGATC
TTGTACCGTATCGCCCGGATGCTCATGTTCGCCCCCGTCGCCGCCAGCACGCCGTCCTTG
GCACCCGCGAAATTCCACTCCACCGCCTCCTCCTCCTCTGCCGCCGCCGCCGCATGCCCG
TTGCTCTCGCCGTTCGCCGCGGTGTCCTCGGCATGCCCGTTGCTCTCGCCGTTCGCGTCG
GCGGCCTCAGCATGGCCGTTGCTCTCGCCGTGGCCGTTGGTCTTGCCGTTCGCAGTGGCC
TCGCCGTGGCCGTTCGCAGTGGCCTCGGCATGGCCGTTGCTCTTGCCGTTCGCGTCGGCA
GCCACGCCATGGCCGTTGCTCTTGCCGTTCGCGTCGGCAGCCACGCCATGGCCGTTGCTC
TTGCCGTTCACGGCGGCAGCCACGCCATGGCCGTTGCTCTTGCCGTTCGCGGCTGCGGCC
ACGGCAAGGCCGTTCGCGGCGACTCCGTCGCTCTGGCGTACGGTGGCCATGAGGAAACGG
GTAGGAGGAGAAGGAGGAGGAGGAGTACTACTAGACTACACCAGGAATACTACTAGTAGC
GGTAATAGGAAACGAGTTGGGGACGGATTGAGTAGCGGTGATTGACGGTCCTATATAGCC
GTTGCTCTGACCGCACACGAACCGGGGCCGGCAGCAAGAAGCACGCACGCGCGCACGCTC
TGGCACGCTCTGGCACGCCGCTGCCAGCTGACGGGCGTGGCCGTTGCGGCCTGCCACCAT
TATCCCCGGCATATTTTCGGCGCCTCGCTTTGGTTCTATGCACGTACTCTACCCAACCCA
GCACACCATCATCTATCCCTCTTTAATAATTTGGGAGAAAAAGATAAGCGGATCGGGACG
CAGGAAGCATGATGCTTCTCGACTCGACTCACCCAATGCTGATTGGGTTCAGTTAGTGAC
ACCCACTCAGCTCCGCTCATCACAAAGCATGCATCGCTCAACTCTCCTGCAGTCCGCTGC
ACGCAGTTTTCTTGGCAGTGCCGGCAGACATCATGCTAAAAAAACACTCTACCTAACTCG
GTATCGCCATTCGCCAAGCCAGTGAGGGATGACACACAGGGCACATGCCATCTCTTTCTT
TCGTTTGATAGCTAATCATACCATTGCAATGGGATCGCAATGACTAAATAAATACTAAAG
ATGGACTTTACTACTTTAGTTGCTAATTCAACCAACACTTTCTTTAGAAACAGTCAGCAT
TTATCGACTTACCGAAGAAGTGATTTCATTTGGTAAATCGATAAGTGCGAGAAATCGGAG
GTGAAAGGAAAATACTTCAGACATTGAGAAGGAAAGTGGGGAGGTAAATACTGGTGGTGA
AATAGCAGACACCACGTCCTTCTTTTTGATATGAATAGAGAAAGAAAATATGAAAAGGGG
GTAATGTTATCTTGCGAAGATATGCTGTGAGGGGGATGGCAAGCCAACGCTTTTTTCCTG
GCAGTTTTAGTTGCTCACCGGAAACGGCGGCAGTTTCAAACCGAAATTGTCTTCTTCTAA
ATAAACCGCCAATTGTTCTGAGAAAGTTGACATTCCTTCAAAACGCCACCCCCTTCTACA
AACTTTCGCCAGCTAAGACGGGTCCTAAAAAAAAGTGTAGCATTTGCTTTGGTAGGTCGT
CTAATTAATTCAACTCCATCCGTTCCTAAATATAAGTCTTTATAGAGATTCCATTAGTAG
ACTACATACGGATGTATNNNGACATACTTTAGAGTATATATTCACTTATTTTGCTTCGTA
TGTAGACTCCCAGTGAAATATCTTAAAATACTTATATTTAGGAACGGAGGGTGTAATTTG
TTTTCAAAAATAATAATTATACTTTCTCTGTATTTTTAACACAGTACAATTAAAGTTGCT
CATATACACGAACATATAGTCACTCCCTATGAACGCATGCACACACATCCTATCCTTACG
AGGATCCTCGAAGTGCCGAAACATCATCAACACACATCGTTCGAAGGCCTGAAATAAATT
CAGAAAAATCGTAAGCATCAATATCAAGTCTAGGACCTGAACCCTGATGGTAGGGGATAC
CATTGCCCTTTCAACCATTCAATCATAGATTCTATTTTATCAGTTACTTCCTCTGTAATG
AAATGTAAAAAATAATTAGATCACTAGATATAAGATGGAGATTGCTGATGTTTTTTTTCT
TTCTTTGACAAGGTGGTAGTTGGCAAAACTTGCAATGTGGTCTATAGTGAGCTGGTATTG
GATCACACGACGGCGGCGTCAAGTTTGGCTTCCCCCGCACTCCTGCTGCCAAGTGCCAAC
CTCCCCCCGTTTGCGGAAGAGAACAAAAAAGGAAAGAAAAATGCCCGCAAATGCGTGCAG
GAAAATAGCCGGAAGGAAAGACAAGTTAACTGCAGCCAGATTGGTATGTGGCCTTGGCCA
ATTGCGAGTGGCTCATGGCAATATATGCGTGTGCGCGCGATGGAGTGCACCAGAAACAGA
ATGTACCACCCCTGCACGGCAGGCTTGGCTGGCCAGGTCGGTCTAATGATCCGCCATGCT
TTTGTGATGGATGGCGCTGACGACGAAGCCTCTCGTCCATGCGTGCCTTTTGGAGTAACG
GCCAACCCACTAGGGAGGAGGAAGGGAGTTCTTGGAGTTCATTGGCCCCGTCAACACGCT
ACTAATAGAAAAGTTATAGCCGTCACCGGTCCTGTGTTTAGATCATCTCCAACCGCGTCC
TCAACGCATCCATCAGAACCCTTTTTTGTCGTCGGCGTTAAAAAATTCAATCAGTCGCGT
CGTAAGGACCTCGTTTTTTATCGGTTGGATTCATTTTTTGGGTTGACGATCCCACATCAA
ACCCAGCGCGCTCGGGACACTTGGAGGCTCCGGCGAAAGGAAAAGCAGCGTGTGAGACAC
CACTGTCAAGCGAGATTCGCCCTCGCACGCGAGAGGAAGCCTCGCCGCCATGCCGATCCC
GACGGCGCCCACCTACCCACAGTCGTTGCCCCGCCGCTACAAAAGGACATTTTCCCGCCG
GTTTCGCGGCAGCCTCCACCCCGCTCTCATGGGAGAGCTTTCCAGGGTCACATAGGCGGG
GATACCGGCGGCTGCCCATCCAACACGCCTGCCAGGTATTCAGCGATTTGTCTGTTCGGC
CATGGACTCAGACGACGAGTACGCGTTCGCGGCTATGATGAAGGAGGAAGCCGAGGCCGA
CACCGTCGACGAACAGCACCTCATGATCCTCGCCGCGCTGGCCGGCCTGTTCGCGAACGA
TGCCAAGCCGAGGCGAGGTGGCTCGATGCCGGGCCGCCGCAAGAGCAAACAAGGACATCG
AATGGAGGGCTATCTCTACGCCAACTAGTTCGCCGACACTCCTGTGCACGACGAGAAAGT
ATTTCAGTGTCGTTATCGGATGGGCGAGAAGCTCTTCCTCGGGATTGTGAATGCCATCCG
GGAGTTCGACGGCTATTTCATTTGCATGAAGGATTGCACCGCCATAGTTGGATTCTCCTC
ACTCCAGAAGTGTACCACAGCTATGAGGATGCTTGCATACAGAGCTCCTGGTGATATACA
GGAAGACTATGGGTGCATGGCCAAGTCCACCACCATTGAGTGTTTGTACAAGTTCTGCAT
GGCAGCGGTGGCAGTGTTTGGACCACAACATTTGCGATCACCCAATGTTGAAGACACTAC
TCGGATCCTAGCACAAAATGCAGCAAGAGGATTTCCTGGGATGCTTGGAAGCATCGACTG
CATGCATTGGGCAGGGAAAACTGCCAATTTGCTTGACACGGAATGTACAAAGGCGTCAAA
GGAGGTTGCAGTGTGGTACTTGAGGCAGTGGTCACATAAGACCTATGGATTTTGCCGTCC
TTCTTTGGTATGCCAGGAACTCACAATGACATCAACGTACTGCAGTGTTCGAACGTCTTC
GTGAAGCTTGTTGAAGGTCATGCTCCTCGATGAACTTCGAGGACAATGGGCGCCACTATA
ATAAGGTATACTATCTAGCACATGGTATCTATCCGAGATGGTCTACATTTGTGAAGACTA
TCTCAAACCCTGTGGTACGAGGCAAGAAGTCACACTTTGCTAAGTGTTAGGAGGCTTGCA
GAAAGGATGTCGAGCGAGCCTTTAGTGTGCTCCTATATCGATTTGTTGTTGTCTGGTACC
CCTCTCTGACCTGGTCGAAATCTTAGATGTGGAAGGTGATGAATTGTCGTGTCATCTTGC
ACAACATGATCATTGAGAGCGAGCGGGAAGAGACAGTGTTTGACACTAAACCATATTTTA
GGCAGGGCCCTCTTCCAGTTGCTTACCACGAGGTACCAGCGACATGGGTTGCCTTCCTCA
ATATGCGCCAGGAGAACCAAGACCCACAGATGCATCAAGAACTGTAGGACGATCTGGTGG
AGCACCTATGGAGGCTCAAGGGCAATGCCTAGTTCGATTTGTTTTAATTTGTGTTGGAAT
TATGAGCTTGCTTCGTTGAACTATTTGATTTGTATTGATTTCTATGATGAA