morexGenes - Barley RNA-seq Database

Contig contig_39901

Source Contig contig_39901

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_39901 (6209 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_39901

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55370	7	1640 bp	MLOC_55370.1	Available	Available	LOC_Os08g41090.1, FRAME:-3, EVALUE:2e-157, 13108.m04406 protein peroxidase precursor, putative, expressed
MLOC_55371	1	1383 bp	MLOC_55371.1	Available	Available	LOC_Os08g41100.1, FRAME:-2, EVALUE:0.0, 13108.m04407 protein CHIT12 - Chitinase family protein precursor, expressed

CDS Structure of MLOC_55370

CDS Structure of MLOC_55371

Contig Sequence (6209 bp)

>contig_39901 6209 assembly3_WGSMorex_rbca.fasta
AAAATTGCCTATTTACTCAACACTACATTGCTGCAAGACTTTTTGGAGATGGTTATGCAC
GCCATGCATCTGTTGGCTATTGTATCCTCCATTCCCAGATATTGAAGCAATTTCTTTGAA
AAACTCTACATTGGTACAATACAAGATTTTTTGGAGATGGGTCTAAGTAAGAACATGGAA
GACAGGGAATACCGTATATTAATCTGACTTGAATATTATGTATTTAACTGCTAACTTAAC
ACAAATTTTGTTGGGTGCAGTAACACTATTTCATAGCTACAAGTATCTTGGCGTTTTGGC
AACAACGAGCGGGAGATAGGGCAGCAGTGAATCACTACAGAACGGGCAAGGATATGCTGT
GAGCAAAATTTGCACGAATCTTACACATGTAGCAAAACTTCTACAGTTGCGTGCATCGAT
CCTGTAGAGGCTAGGGTGACACCTCCATTTCGACGAAAAAACTAGGTAATTCTAGCTAAG
TTGTTCTCCACGAGGCTCCACTGTTTACAAGCTTGGTATATGCATCTCTGAAATCGGCGA
AAAATTTATCCTGGTCCTCCGCATAGATGTTGATCCACCTGCAAGCAGTTTAGTGTCTCC
GATGTCAATGGGCCGATCAGCTGACGTAAAATATGCAAGGAAATTTGCTAAGATCCATTT
GGCCTAGGTTGCTTAATATTTTTTAGGTCGCCTAGTCTGCCTAGCTTGTCACCAAAAGTT
TAGTCAGACGGCAAATGGTGCTTGTATTTCAAAGATTGGGCAAGCAAATGGTGTTTAGAA
AGATTGTGAATGATCTACAACATGTTACTCCCTCCGTTTCTAAATNNAAGTCTTTTTAGA
GGTTCCACTATAAACTACATAAGGATGTATATAGACATATTTTAAAGTGTACATCCGTAT
GTAGTCACTAGTGTAATCTCTAGAAAAACTTATATTTAGGAACGGAGGGAGTATAAGCTA
GGACCACCTCTAGAACTATTCTGGATTTTACTATTCATGTAGGCCATCTTATCTAATCTA
GCTTATTTAAAGCAAGCCAAATCATCTGGCTCTAAGATGGTCCTAATAACTTTGTCGAAT
GAACCCTAAGAAGGATATGTTTTGTTAAACAAACTGTCTGGTTCAGTAGAATACCTCAAG
CATTCATCATCTTCAGTGAGTGCCCAGTCCGTGGGCAGCCCTATCGGCATGCCAGCTTCA
CATATGAACACCACACATAAGTACATTTACAAATTAAGTGGTATTAAAGGGGGAGATGGT
AATATCACAATCACTCACATGAAGTCGGCCGTGGCTTCTCAAGGAGTACTTTGAAATAGG
CGTTATCAAAAGCATTTGGATTCCCAAATCCTTTACCCCCAATTGTGTGAGCTCCAGATA
AAACGACCATCTCCTGTGTCCTGCCAAGCAGACATGGATGGGCACTGGAAGCTTTATGGA
AAAATTGGCAGAATTGTAGGGAAAATCATATAATACAAGTTTGGCCAATGGAGCTAAGTT
TCATCAGGTACTAAAAAAATAGACAGCGGAAATTCACAGAGGTTGTTGGACAAAAGAGAG
ACTCACGAAAACCCCTTTTTGCCAAATGATGTTTTCAAGGCGACAACATCCAATGTTTCT
TCAGGAAGTTTACCGGTAGGATCAGCAGTGCTACATGAGAAATGCGTTATTTCAGAAGAA
TAACGACAAATACCTAATAGAAACACCTCTGGGATAGCGAAAAGTTTGGTTAATACTGTA
TGGAAGTTCTAAAATGACAAGCCACTATGATGCACCTGGAATCTAATCGGCCTAGTCTTA
CGGGAATTTCAGGCCCTCCACAGAGTGCAACTGCTTCAGCACCAGCCACTGCGATTAAGT
CCGCCCATGACACTATAGAGACAGTAATAGGTTTGACTCCAGGATACAGATTAAGTTAAA
TACAGACAACACATGTGTAAAGCACATACCTTGCTGAACCTGGTCGATTCCTTCTTTTGC
TTTTCGTAGTATCTGATTGGTTTTAAAGCAATCAACAGATATGTCAAGTTAGGTGTTCCT
CCGTAGGATATGGCACTATCCATGACAACAAGCAAAGAGGAAAGATGTGTTGTAAAGGTA
CTTTCTGAAGAGGAAAATAACCTTTAAGGATTTACTAAGTCCTGTATTTTCAGGTCTGTC
AGCTTCATAAATTATGGAGCCATTCATTCCACCTGCAAGATATTGTCATCAATCATCAAT
TTTCTCTAGTGTCTTCTACTCTTAGCATTTTGAATCGCAATTCTAGATCATTAGACTTTT
AAACACGTGCAAACCTTGCTCAGAAACTATTATTGAACTTTGGTAACATGCAAAAAATAT
CTAACCTGATTTGTCGCTAATATCAAAAGTCCCTGCATCATGGAAAACCAAACGAAGCAC
GCCAGCTGCTTTCACCTTGGATAAGACATTCCTCACTCCGTCTCGAATAATTGATCCATC
ATATGAGTCAGCCCTACAAAGTCACAGTAATTAGGGAACTTCTTTGATATTATCATGGTG
ATGATGTTTAAAAATCAAGAAACAACCACCTCAAAGTTCATATGGATGTTTAAAGAACAA
GAAACAACTTTGAGTAGGTTACTCTTTTCTGCGAATTAATATTGTAGGTCATACTTGATT
GTCCTAGGATCCACTTCTTATATTTGATTCTAGTCTATGATTACAGTTCAACAAATTGAC
CATAAAGAAAAAGCTCACATAAATGTAGGCTAACAGCACTAGATTGATAGGAACTCTATC
TCATAGGTATGAGAATTAAGTACAACATAGGAATGTAATAGTGGCTGAAGACTGTACTTA
CGCACTCGCCATATCAACATGAGGAAGTAGAAAAGGGAGCAGAGCAACAGCAGCAAAATC
TCTCCTTCTATAACATTGGGTATTTGCAGGACCTGAGGCCACTATACTCACAAAAAATGT
AATTGGCCAACAATATATTAGCAGACTGGAAGAAAATTCTTAGTTCTTGCTATATATTCG
TTTTGTCAAATGGTTGGAACGCAATACAGGTTTATTGTGTGAAAAAATGTTCAGCTGTAG
GCTGTAGCAACTAGCTAACCCCTCAAAACTAGTCTCAATCCTCAAACTCTAGGTGGGAAG
TAAATTCACTACCAGCAATGTTCTCTTGTACAGATTCCCCAAAGCAACAAAAAATGAGCA
ATGTATTACAGTGCTATTTGCTTCTAAAAATTAGCCATGAAATGCGCCATACCTGAAAGG
CTGTTCACATTATGCTGTTCAATGGGCTCTGGGCATGCAGGATCAGCACTGCACCTACTA
CCAGCAGCAAACGCTGTTATCACAGCCTTCGCAGTTCTTCTACTCCTGTAGCACCACAAT
ATCCACATGTTATCCGCCGTCCATGGCCGGCATGAGAGGGGATGCAAACATTTACCTGCA
GGCGCAAGGACTGCAGCTGGAGAAGAAGAAGCTGGAGGAGGAGGCAAGATGGGGGATGTT
GGTGAGCTCCATCCCCTTCCTGCTTGCCTTGTTTGAATGTCAGTAATGGTTGCTGGTGCC
CTGAAATGAAAGAGGAAAAAGACACAACTCACTAGTCAGCCTATCCAGGTCCATGTGTGG
TTCCCAGCTGACGGTCCCCAAGCAGGCACTTGGATAAGCCGCTTCAGTGGTAAATATCCA
TCCATCTGTAGGCTATTAAGAATATACGTCTGAACTCTATCTCTGTAAATTCACAATAGA
TTTCGTGGTGTTGACTGTGTTTTTTGTTTGCTGTGATTTCTTTTTTTTTCACCCATGCTC
CCATATAACACCATAAAATTACCCAAAATAGAGAAAATGCCAAAAAAAAAAAAACTGTGG
TTCACAGAACTCGGAAAACAAACCAAGGCAAAAGATCTCTCCACTCAGATCGATTTAAAA
ATCATCATTGCTGCCCAGCAGTCATCTTCACAGAACAAGATAGCAATGGAGGTTTTTGCT
GAAAGAACATCCACAACAGGAGCAGAGTAGTAGGGAACTTATTAAAGCAAAGGGCGGTGA
ATTATCAATTACCGAGCACTTAAGTAACGGAAGTAATATAATTTATAAGAAAGTCATCAT
GTGTTCAAATGGGAGTTCTGGCTGTAATATATACATGGCAAAAACACATAATGGGAGAAG
GTTACGGGCTTACATAAATAGGTTACAGACTACACAAACGCAATAGTCGTCCTGGGAGCT
ACTAATAAATACTAGTATCATATAGATTCGCATACAATACTTCTATCATTCCTGATGCAA
GATAGCTGAGCCTCAAATTTACAGGGAAATATACATGGATCTGGCATGCAGCTTGCTTAT
GAGTCGGGACTCTTTGATGATGGATTGAATGGCACTTGGTCGGCACAATCCAAGTTATCT
CCAGAGTGCTGAACACCAACTCCCATCAAATCAAGATAATGCTGATAGTGGGATATAATG
GCATTCATACTTTCAGTGGTACCTTTACCACAGATGGCATCACCATACAAAATGTTCATT
GTCACACCGAAGCCAGGATACCTCTTGGACAAAGTGTCTTTCTTGGTTGGTTTCCAGTTG
CCAACAAAGGCATCATGGGCTGATGGCTGCTTCCTCTTCATTGGAGTCATCCACCTCCAG
ATCGCTGCTTCAAATGCTAGAGTGGCATTCTGTTCCAATAACTCTGGGTGGTTCAACAGA
TCCTGCTTGATACCCTTACCCACGATACCATAGTTGTAGTTCCTGGGGATCATTAACAAG
CAGATTCAAAATCAATAGCTTGACCCAGCCAGTTTCTAATTAACAACTACTGACAGAAGA
ACATATCAGACTGACCAGTAAACAGGAAGGGCGCCTCGGCCATAGTACCCAACTCCTTCA
GCACAACGGTATAATTCGTTGCTGTCGTCGCAGTAGCTCTGGCTTGGGCTCATTTCATGG
TTGTAGCAAAGACCCCAAGCCAATGAACCACCTGTGGCAAGACTATATCCACCTGTAGGA
GTAACCATCCGGTAATATGAGATGCCACTCCTGATTATCATCTTTAGGATTCTTATACAT
TTGTAACCACGTTTAAATGTACCACTCCCAGTGAACATATAACAGTTAGAATGAAACTGC
TGAAGATTTCTAATCAGTTGTACAAAATTATACGTACGAGTTTTATATTATTACAACTTG
ATAGACAATAACAAGACTCATACTAGCACTAATGATGATTTGTATATATCAATCCAGTAT
GGGTTTAAAATCAGATAAAAATGCATTGTTTTTTTTTTACCATTTTCAGATTCAAAATTG
CAGGTGTCAAGTTTCAAATGTAGGTAGGAAGTAGGAACTATTCTGTTGAAACACTATTCC
AGTGGAAACTAAATGCCTACACATCACGTTGTATCCGGAAAAGGCCCATACAAATAGTCT
CACCCTGGCTTGGAATTCATGAAGCCTAGGGCTAAAACTCTTAGTGACAGGTACCGATTT
CTCTATATCCCGGAAGGCACATCAAGGTGAATTAGAGAATGAAGAGCAGAGAGAAGCGTA
CACGAGGTCTTGGCGCCGACGTGGCCGAGGAAGGCGGCGACCTCCTTCATGCTCATCTCC
CTGCCGCCGGTGGTGCCGAACCCGCGAGGCTCGAAGAGGGACGCGGCGGTGATGAAGGCC
TGGTAGTTCCAGAAGCCGGCGGCGTGGGCGAGGGAGTTGTTGCGCTGGGCGAAGAGCTCC
TCGAACTGGTAGGCCTTGAAGTAGTCGGTGATGGTCTCGTTGCAGCAGAACCTGCTGCCG
CTGCACTCCCACCCCTTGTCGCACGCAGTCTCGCCGCCCTTCTGCCTCCTTGCGTCCGCC
GCCGCGAGCAGCGCCACCAGGAGCAGAAACGACGCCGCCCGCACCATCCCCATTGCCGCC
GCGGGACCAGAACCGGCACCGGCGAAAGGGAAGCGGGGGGGAGAGAGGAATGATGGGGGT
TGTCGGTGGTGGGCTTCGTTTCCTCACCGATCTGCTGGGGAGGTGAGAAGGGGAAACTGG
TTGGTAGCCGTCGACGCAGGAGAGAGGCTGGTGCGCGGCAGCTGTTCCGGGGCATTTCCG
TCATTTGCTGCGGGGCTCAATTCCCGTGAGGCCTAATTTGGTTTACACTGATTTTGTAGG
ATTTCTATAGAATTTTTCTCTCTTCATCCCTTCGGTATGTATGAATGGATTTCTATTGCT
GCTTACAAATACTCCCTCCGTCCCAAAAT