Map Locations of contig_39889 (10328 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39889

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55358 2 958 bp AK365664 Not available Available None
MLOC_55357 4 1927 bp AK365664 Available Available None





CDS Structure of MLOC_55358






CDS Structure of MLOC_55357






Contig Sequence (10328 bp)

>contig_39889 10328 assembly3_WGSMorex_rbca.fasta
TATCGCAAGCACGCATGACTATATACCGAATACATGTCTACATTATATCGATGAATTGGA
GCTAGTTCTGTGTNNNNNNNGTGTGTAACTGTTACATGATCAATATCATCTAAATCATTA
TCCATCACTAATCCACGTGTCTACACTTTACATATATTGAATCATGTTAAGTTACTAGTG
TTGTTGCTACCGTCACACCTGCTACTCAATTGCTACTGTTACTAATGTTACCAAAAAATT
TGCTATCAGAGTTATTGTTACTACTATCATTTGTTGCGCTACTACATTCTTGCTGCAGAG
AGATATCCCATGTGCGGTTGAATTGACAACTCAACCGTTACAGCCAATAAATATTCTTTG
CCTCCCCTNNNNNNGAATCAATAAATTAGGATGAAATGCTACACATGAAGACTCTTGCGT
TCCCCTGTACTTGTGGGTTGTCACAGCGGCCAGACATCGAGCCTCAGCCCTGGCCCGGAC
ATCCCGCACCGCCCCGAAAATCTGGCCTCGGCCCTAGAAATACGGCCCAAAGATGCCAGA
AGACACATATCCTCGCTAAGGGCCCCTAGCCCGAAAATCTGGCGCGTCCACATCAGTACC
GCGCGGAACCAGACGCCCGAGACCCGAACATCCGGCCCCGGACATTGGGCCTGCGGCCCA
AGGCCCATGTATCTCTCTCCTTTCCCCTACCTCGCCTAGTACTCCCTCCATCACAGTATA
TTGGGCGTATCTCCAAAACGATAATTTTTCACAATTAAAAAGAAATAAGGCGCATGGCAT
TAATTAGCCTATTAATTGGGGTGTTTTGAAAACCGTCTTCACCAATGCATGCTCGTTTAG
TGGACGGGGGGTTACTAATGCATCAGTTTTGCGATTAATTAGGTGCTTTTACAGCTCGTC
GGCTCGGTTTTTCCTACCAATAGAAAAACATCTAGGTCTCAGAGCCCTGTGAGATACGTC
CAATATACTGTGATGGAGGAAGTACTATATAAGGGACCCCTCCTCCTTTTAGGGTTAGCT
TATATTTAGCAATTGAGATTGTTGAGCATAGTTCCTTCCACTTACCTCCTCCCATGAAGA
TGACCCTATGTGAGAAGATCCAAGTGGATGTCAAGGCCTACTTGTATCCATTCATTGAAC
TAAGTTCGTTGTATCTCTTGTGTTCTATGGATGGATGTGTGATTTGAAGATCGGTTTTGA
GTGTTCTTGTTTTCTCTTGATTTTCTCCCTTTCCCCTCTAAGTGTGAAAAGATCGACAAT
CACGGGTTTGCCCCCGTATCACATACACAAAAATAAACACAGGAATCAATGCATGGTTTC
CATGAGAATTGATGTGTCATAGTAGTTTCTTTTTTCAATCAGATTTTTGTTTGTATTAGT
CAAACAACCAGAAGAAGGTTGGAGCCGATCCATTTTGTGTTGGTCGTCAAACAGGCGTCC
ATAGTATCTCACAGAACAGCATTTCCAATGACTTGCCGAGAAATGCCAAATCATGCGCGC
TGTTCCACTTCAACCTGTACTCTTTAGGTTACATACAATGCCTCGGTCCGGTAGTACATC
TCTCCACTAACTAATGGTACGTGGCACTCCTGTTGCCCGAAGGTGGGAAAGCCTGTCGCC
TTCGTGGATTCTGGAAATTCCCCTCATCCTCTTCGCCGCCACCCGGGATTTGTTTCGAAC
TTCTACGTTTATCTCCAGAATCCGCATTGATTGCCCTGGCCACTGCATTGTCCTTTCTTC
TCTCAGATCTAACCTCTCCAAATGAAGTATTCTTTCTAGCTTCAGCATAATCAAAGGCCT
TAAGCTGGTCGTTAAATTCTGGTTCTTCCGGTGCTTGGTGCTTCTGTTGAAGGTCTCTGC
TCTCGTTGAGGGGTCTGAAGCGCTGCTCGATGCCAGAGGAAAGCTCAGGAGGGGAGCTAG
ACACATCAGTGTCTCCAGGTTTGCACTCGCTCTGTCCATCTGCGTTGCCGTTTTCTGGGT
CATCTGTTCCAGTGTCCAGCTGGATCACTTCCTCCATCTGAGAAGCAGGATCATCGCACA
TGATTTCCGCTTCAGGTTCCACCGATTTTGCTACTGGAAGGCTAGTTGCTGCAGGATTTG
CACCACCTGAGAAATGATGGAAAGGCAGTACCACGGAAGACTTGATCTTCTCCACCTTGC
TTTTACTCTGCATTTGTAACACAAGCCAAACAAAGTCAAGCATTACTAGGGAAAGCTAAT
GGGGGAAAGTGCTTTCTGTTGCACCCAAAAAACAGAACAAAGATAACACCATATATTGCA
GATTAGTGAGCTTACAAAAAACCTAAGTCCCATAACCATAATGAAGACAAGTCACCAACC
TTTCCACAGTGAGAACTTGGGTAAAAATTTCTAGTACTCCCTCTGTCCCAAAATAAGTGT
CTCAACTTTGTACTAGAGTTCAGACACTTATTTTGGGAAGGAGGGGGTAGCATCTATACC
GAGACATTCACCCCATGTGGCTATATAGAGAGAATAGAGACTACGGAGGAAATTCACGAA
AAGAGGAGACTATTCCATATCTTGCACCTTATTTACTGGAGTAAAGTGAGAGCTCTTGGT
ATATCTCTTTGGAACAAAAGTCATAACTAATTTATTTAGATGCAATTATTTTCCATTGGT
ACCACAGGTATCCCCCGTAGGTAAGAGGTTCGGATACACCCAAAGTTCAGACACAATTAG
TACCTTAATTCAAGATCTTCATCACTTGTTAATTCTACAACAGAGGAAAGAGAAAAAAGG
ACAGAGCAGAAACATCCAATACCTGGTCACTTGAAAATCCTGGAAATAGATTTGACCTTC
TTGCGGAAGAGGGTTTTCCTAACAGAGCACCAAAAGCCGTAGGTCTCTTCGATACTTGAA
CTGTTGCCTTTATTACCTGAAAATGGAGCTGCTTAGATACTGATACAGCAGAAGAAATAT
AGCAAACAAAGGCAAATGATTCTCTTACTTGCTGCTGACCACTATTGCTCGGTATCACTG
TATCTGCTTGCCCAGTAGCGCCTGGCAACGCCCCAAAGCTCTTGGTTTCAGGTGTGACGT
TATCTAGTTGCAAATTACCTAAAGAAGCTCCGCTCGTAACATTCCCAGTACAGAAAGAAG
TATGGATGTTTGTAATCACTGTGGGAGCTACAACAGGTTCAATCAGCTGAAGATTACTTT
CATTACTATCAGCATCGACGGCAGAAATCATTTCAGTGTCTTCAGCGCCGTCCTTCACTT
CTGCCACCATTAACTGCACAAAATGATGCATTAGTATGAAAAGCAGCCCTGATCCCTTAG
TAAATCTCTGAGGAGTTGGTTCCTACAAATTGCAACAGTAAAGTAATGATAATATATAAG
TTTCACACAGACCAGCAGAACTACCTCTTCCAGCCTTCCTTTCTTCAGTTGCTCAGCTAT
ACTTTCAAAAGCATCGGCATTTGCGACAGCATTCCTTATGGTAGTAATGACATGTCCGAG
ATAGTGCTCAAGAAATTTATTTTTTGACTTAACTGTTCTTTTTAACCTCCCAGTGGTCAC
AGGCATCTGCTTGGCTGTAGTCCAAATTCAAAGGATAAATTAGCCAAGCTAACTCATGTG
TGTAAGCAATGTACATAGATTAGGAAAGAGCAATGCCTATTTCAAGTAGAGTCTTATTGG
GTAATATATAACCAGTGCTCTCATCCTCAGCACGAGCAACACCATCTCTCCATTGATATA
GACCCTGTGATGGAAAACAACTAGATGAGGCATGGTAGAAATGATTTCATTTCAACTTAC
AAATGAGTATATTAAGTAGTCATAAATAGCATAGCACCTTAGGCAAGCAGAGGCATAAAA
CATAAACAGAACAATGTCAACAAATAAAATTAAGATGTCCTTTTCATTAAGGTGGATCAT
CTGGAGTTAGAGAAACCAAGCACAGCTTACAACAGTGTAGTATAAATAAGAAAGCATCCA
CAAGGACCGAACTATGGGGTCTGGAAGAACTGTGTTCATTTTCAGCAAAATGCAGTGTAT
GTGTCCAAGTGGAGAAAACTTATCAAGGATCAAGATATCAGTATAAAGAAGAATCACAAA
CACTTCAAACAGGAAAATTACTTACAGCAAGAACTGCCAGCTGCCTTGCACTCAAGTCAT
TTTCTTTCAACCTGCAATTACATAAAAAATGACATTACACTGCTTGAATGGTTTCTAGAA
CAAAAACATGGTAAACCAAGAGAAATACAAACCCATGTATGTAAAGGTATGATGAATCGG
TCAGCAGCTCCTTCTCATATAGTTGCAAGCAAATTTCATTGCTGCGCTTGCAAACCTGAA
GTAATAGCAGACATCTGATTACTTACATGTATGCTCTACGGCCCACACAAGTTCAGGTAC
TGAAGTCGTTGTACAATTACTGAAGTCACTAAGTCAATCCATAAGTAACAAAAGTAGTAG
CAAAAGAATGTGCTTGTGTTCCTCAACACACAAGTTTACATCAGTTCAAAAGGCACACAT
TCTGAAATTCAAGCACGCAATCAATTGCATGTGATGCTGCATAGAAGTTGTCAACCACAA
AATCGATTGATGGCAGAGGCAGACAATACTAAACAACGCATGTAAAAGAAACTTGACCAT
CAAACAAGCAAACGAGGTAAGACTTGCGAGCAAAACAAAACAAAAAAATATTACCTCCAA
AAGAAGATCATCGCCTGAAGACTCATTAACCAATCGCAATCGCATCAAGTCATATATGTA
GAGCAGATAGTGTGTATCTTCCCTAGCATACCTGAAAGGCATAGTCACAATCAGACACAT
TTGATGGACATAATTAGTGAGGACAGAATAAATAAGAAATGGAAGAACAAAATGTGGCCA
TCAAAGCACTGTACTTGGTCATTTCATCAGGAAGTGGCCTCAGCCTCCAATCTGCACTCT
GATATCTGCATGAGATATATGTTTTAGTCAAGTTTTTTAGAATATAATTCGTGGCATGGC
AAGTATAAGAAAAATGTACTCTAGAATAAGAAGTAGTATGTACTCTTTGTTTGCTGTCAC
TCCACAGAAATATTGCAGAAGATGCTCCAGGCTGTTGCGGTCCATTTGTAAGATTCTTGA
AGCCTGTTTGCATTTTGATGAGAAGATCAAGCTTTAATTTATAGAAAACCAAAATGGCCA
TTTTAACTAAAGAATTTAAGCATAAAAGAAAACAATAGCTGAACTGGATGCTAGGGCCAT
GCTGCTGTTTATCTATGCAGAATCATACCTGCCCAGTGTCGAAAAGGTTGCACACATATA
TTCCAAAGTCTCTTTGAAGCCATATTATATCACGACCTGCCCCATGCATTACCTAATTTC
CCATGAGAGTGATGAGAAACTGGACTTTGAACAATAGCAAGAACACATGTATACAGAAAG
AGCAAGGTTTACCTTCTTCTTAGTTGGATCTTGAAAAACTTCTCTTAAGTTCTCACCGAG
ACAATTGCGGAGCTTAAGAGTGTCTACAATAAAGTCCTCAGTTCTAGTTGAAATCTGCAT
CAGGCAGGTGAGACCCTGAAAAGACCTATAGTGGTTGTGTTCCAAATCAACCTGAAAAGA
GAAAACAAATGGAAATTGATTTAAGTTAGTAATTACATTACCCTGACACCAAAACAAAAC
AAAAACAAAAAATTGTACAGTGACAATAGTTAGCAGTAGACAGTAGTTAGGAAGCAAAAG
AAGACTGCAGAGCATGCTACATTTTGTGTAACCTGCAGCAGAAGTTGTGAATTTGCGTGC
TACACTGACAATGCAGAAAATATGTAGGGAGGCAAAAACAACTATTGGCAGCAAAGGTGA
AGTGAACAAGGCAAGAAATATGATGGTTAGTAATGAAAACTAAAGCACGGAATGCGAATA
TGAGTATTTAATATTTACAGTATGGCATATGAATATGAGTATTTAATCGTCAACGTCCAT
GCTTTAACAACTCTAGTAGGCAGGAAAGGCCCAACTTCCCACATAGATCTAGCACTGCAA
TGAGAATTGTAACTCTGGTACTAATAGCAACGTAATTAGCCTCCTGAATATTTTATAGTA
AAACACAATCTACAGAATCAAAAGTATACAGCAGGTTGCACTTCATATGGTCAACCAGAC
AACTACTTGAGTATTGTTGAGGCATAAGCAAGAACAATACTGCATTTCTATGAACTGGAA
GCAAGAAAATCTAGAGAAACTACTAGTACTGTTACTTACAGCAAACTCAGTTGCACTCTT
CAGCTTTGTCACCAACACTTCCAAGGTTCTCCGGTCTTCAACAAATGTAAAAGGGGTGTC
ATCTAAAGCAGGTGGTTTTAGTGGCTCACTTTCAGGAACACGCCTGTCAAATAGTTGCTC
CATGGGGAGTTTTTCCTGCAACGAAACAACTGCGTCACACCACTTTTCTCACATTTGATA
AATATACATGCAGAATAAAGGAAACAGCACTTCCCTCCAATTTCTCTGAGAAAAACACCG
GTATTAGATTACACTGCTGACTCTTTGTTCCTCCATACTCATGTTATTTTCTTTCCCTAA
TTTTATTCACACAATCTCTTATGGCATCTAGTCTCCACTACCTAACGCATTTCAATACTC
ATGTACCAGCTAAAACTAATCACGGTCAGTGTGCAACACTTGATAATCTTCCAAATGAAA
TAAAGAAATTCTCTCCTGCATGATTCACTAAACAATAATGACTCATTTGGCACCTTCCAT
GGATGATTTCATCATAAATTTCTGAACAGTCTAATCTTAAATTGTTGAGGGGAAAGTGTG
ACGTGAGATTAGAACAAACATGTGCGGAAGCACTGACCAGTGGGTGTATGGCACGGGCAC
CATCATCGCTGCGTTCAAGGAAGGCATGGTCGAATGGCTTGCTAGTGTTGTCCACCACAA
TGCGGTGCACGTCCTGCGGGCGTGGGATGGTGGGGATGTGGAAGGGCACCTTTGGCTTTG
GCCCTGATGCTGCAGCCCTATGCATGGTGGCCATCCTAACCGAACCAGAAGGTCCAAAGG
CCTCACTTCTGCCAACTCCTTCCTCTCCCATACCCATCTTCTTCTTCTTCTTGCCGTAAA
CAACCTGGAACCCGTCCCCAGCCATCTCTTCTGCCGCGACCTTCCGGCCTTGGGCCTCCT
CCTTCTCCCGCAGCGACTTGAACTCGTCCGCGGAGGCGGCGAACATCTCGAGCAGGTCGT
CATTGCGGGAGACAAGCCAGTCGTAGGCGTCGTCGAGATCCTCCGTGGGGAAAGGCGGCT
GCTGCTGCTGCTGCTGTTTGGGGAGGAGCGTGGAGGCCGCGAGGACACCTAGGGAGGATT
CGGCCCTGGCGGCGGCGGCGGCGACGGGGGACTTGAAGGAGGGGAAGTTGTTGTAGAAAT
GGAAGTCACGGGCGGGAGGGATCGCGCGGGAGCGGGCCGACAGGCGCGCGGCGGCGGAGG
CGAGGGGCCCCGACGAGGCCTCGATGGCCACGGCCGACTTGTTCTGCTTCCACGGCGGCG
GCGGGTGAGGGGCCTCGTCCGCTTCCATGGCGAGTTGGGTGGGAAAGTGGTGCTAGCGGT
TTAGGGTTTATGGCACAAGAAGAAGACGCAATGCGAGTTATGTGTGAGTTTCCGCCTCCT
TTTCTATTTATTTATTTTTTGCTTGGTTTTCGTGCTGGATTTTCGCCTCCTTCCTGTACG
CGGTTCTGATGCTTTACGGTTCGAGCACACGAATGCGTACGGTGAGATTACATTTTGAGA
TCCGATCTTTGCTCCACTCTAAAAATTGTGGATTTGTGGGTTATTTTCTCCAAATCAAGG
CCCTTCTTTATGAAAAAATATATATGAAAGCAACTCCAACAGTCGACTCAAACGGACGAC
GATTTTATCCGCTTTTTGTCTGTTTGGGTGGTCTGAAGGACACCAACATCCGCTTCGACG
TTTAAGTCAAAACATGCATCCAACGCTGGCCCGATCCATTTTTACCGGTGCGTGAATACA
TAATAATCAAGGATTAAAGCCGGTCACGAAGGCCGGCAAGAGTCCACGCGTCCCCGTTAC
ATTATAAATGAAAAGGAAAAAAACTAGGCGTCCTCGTCAGCGGCGGCGAGGTCGGGTTGC
GGCAGACCGGGAGCGGGCTGTGCCGGCGTGGGCAGTGCTAGTGTCGGCGATGGCGCATCA
CGGACGCGCTTGTTCGCCACGCGCGGCGCCATCTTAGCATGGAGGTAGGCGGCCTCCTCC
GGGAGCACAACGCGGGGATAGACGACGAGGGTGTTCCAGGCGAAGCCGGGCACAGCACGG
GCGCGCTCAATGCATCGCCCTCTTAGCCTGGAGGTAGGCGACCTCCTCCGAGAGCATCGC
GTGTGCATAGACGACGAGGTTGTCTCTGTTGCCCATGGCTGCTGGCTAGGGTCGCCGACG
AGGAAACATACGGGTGCGCGAGATGGGGACGCGGGGGTGTTCTCGAAATAGATGGCCGAA
CTCCACCGCATGCTCGGATTAAAAAAGACTGACCGCAGTCGCTGATGTGTGGGTCCGAGG
AGGGTGGCCGTCATAAATTATGTTGACCGTGGTGGTTGGGACGGACACCAAGGGGGGGCG
CGCGTCCACGTCGACGCATTTTAGTCTCAAATTTGGGTCGGAAATGGGTCATCGCGGGCT
TGAAGAGGACGCGTTATGACAATGGGTCGGCGCGTTGGGCCATCCATTTTGTCCGCGCAA
CTTCAAACGAACGACGACGGACGAAATGGGTCGCCCCATTGAAGTTGCTATGAGACCAGA
TCTTATTGAGCATCCCATGAGACCCATTTAGATGGATGCTACGTGGACTCCGCTATCTCA
AAGCATAAATGGCACATGTCATCAGTTCTACCGATTCCCGACACATGTATCTACCCTAAG
TTGTCATATGAGTAATGTATGTGCAACTTCCATGAGTTAGGCCGGTTTCGCGTCCTTGTT
CTTCGTTGCTCTCGTCCATGGTCGTGCCTAACGACCCCATGGCCGACGACTACTCGGACT
ACTCGATCATGGCCATGTCATGTTGCTGGTCAGACAGACTCCTTTTCGAGAGTAGCCGTG
CGCCAAGACTTGCGCGCGACAAGACCAACTCCTCATTCACTCGCAGTTGAGCGCCAAGAC
GCATCGAATTGCTCCATGTTGTTGCACTCACTCACGCAGGTGTCGGTAAACTCTATGACC
AATGTGATATCTCCGTCTAGGACTCTCTTCCGATCGGGGGGTGAGTGTGAGTTGTGCATA
GTCTAGCTTGGTTGATTGATAGCGGTAGTCCCATGCATAATTGAATCGGTTTATATTCAG
CCTGAACTAACTCATGTATGCATAAATTGCATATGAATGTCATATACACGAATCACTTGG
CTACATCCCAGCTAAATCACATGTATGCCCACAAGCAAGAAATCATGCACTCATAATGAT
TGTACATGCCTACACAGATCCGTGGGCAATCATGTCTTCTCATATTCACATGCTAGAGGG
CCCAAAGATGGACGGGTCTAAGGGGCGAGGGGGCTAGACCCCCCCCCCTAATAATTTGAT
TTTTCTTCAATTGAAGTAGCTACTTCATCCAAAAATTCATACTCCATGAAAACTTTGCCT
CCTCAATTAGCAAACTCGCCCCCTCCATGCGTCCATCCTGGCTCCGTCCCTGGGCCCAAA
TCAAGTCAAGGAAGCTCAGGTGCGCTCTGCTATCGGCCGCCCACAACAACTACAGCAGGG
ACACGAACAGGTTGAATGGTTGATGGCGTTCACGTGCATGGAGCAGTTTGATCAGTCTTG
GCGCATGTCATGCACGAGCAAATGGTCATGGCGCTCGCAAGAACATCTTCGGTTGCCGCC
GGAGTCCACCTGCTGCCAGCAGTGTGGCATGCGCCCGCCATGGTCAAGCAGTCGACTAGC
GCCCATTAATAGGTCGTTCGACATTGCCATGCACGGGAAGTGTACCCCTCGTCGTGCCGT
GCAGCCGCCCGGCGACGAGGTCGTTTGAAGCCGCCATGTTCGAGAGAAACGAAGCACAAA
TGCGCGAACCTTACTCATGGGACTTGCGTACATACCATGTACAACAACTTTGAATAAATA
TACGTACATCGGGAATCGTTTTGTTAGAATGGTGAAAACTGATGGCAAGTGGGATTCATG
CTTTTAGATTGTGGAGTCCACGTAGCATCTCTAGGGGAACTTTGCATGGGAAACAAAAAA
ATTCCTACGTGCAAACACGATCTATCCATGGTGATGTCCATCCACGAGAAGAGAGATTGG
ATCTACATATCTTTGTAGATCGCTAAGCGGAAGCGTTCAAGAACGTGTTTGATGTAGTGG
TACGTCTT