morexGenes - Barley RNA-seq Database

Contig contig_39835
Source Contig contig_39835
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39835 (7072 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_39835

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55294	3	2197 bp	MLOC_55294.2	Available	Available	LOC_Os04g10460.1, FRAME:+1, EVALUE:0.0, 13104.m00941 protein amidase, putative, expressed
MLOC_55293	3	1194 bp	AK372375	Not available	Available	None
CDS Structure of MLOC_55294

CDS Structure of MLOC_55293

Contig Sequence (7072 bp)

>contig_39835 7072 assembly3_WGSMorex_rbca.fasta
AGCAAGTTATAGGATGGCGCGCGCGCGAAAAGGCGGCAGCCCGCGCGCCATTTTGGCGGC
GCCGCGTCCCGCGCGCGCTGCATTATAGCGCGGCTGTTGGAGCCCGCGTCTATCCCCACG
CTAAACCAGCCGAAGCGCGCGCGACAAACGCCTTTTTTGGACGCGACGCGTAGCGCGGCT
GTTGGAGATGCTCTTATAACCCCATATGGATAGAGTACGTAGTGGTCTAGACCGTCTTAT
ATTTTTTTTACAGAGAGAGTACTTACTAGCTAATTTCATTATTTTTATTTTTACGATAGA
AGTGAAATACGTGGGCCTCTTCATCTTGAGAGGAACAATGCCCCTACTTATGGCATCAAA
AAATTTGCCATCTATGGTGTCATATCGCATCAACCTGTATTATTATTTTTTTTTGCAGGA
AACAAGGAGCAATCTTGATTGAGAACCTTGACATAGAGAATTTAAGTGTCCTATTGGATT
TTGTGAACAATGGCCAAATGGTTGCATTACCAGCTGAGTTCAAGTTAAGCCTCAACTCCT
ATCTGTACAACTTATTACATTCCCCAGTTCGGTCGCTTGCAGACATCATAGCTTTCAACA
ATGCACATCCTGTTGAGGTCAGTTTGATTTAGAGTCCATTTTTTCATGTATTTGTTTCTC
ATGCATAGTGATATCTACTCGTATTTTCCTTTTAGTTACGTTTTTAGCTCTTTTTGGAAA
ACATGTGCAACTTCAATTTTGAGAACTGCATGCGGTATAGGAAAAGATGAAGGAAATTGG
TCAAGCCGTATTCCTGGTGGCTGAGAACACGACCGGCATCGGTGCCTCGGAGCGAGCGGC
GATCAGTCAGTTAAACAAGTTGTCCGCCAACGGGTTGAAGAAGCTGATGAGGGAGCACGA
GCTAGACGCCATAGTGACACCTAATAACGCAGCATCCTCAGTCTTTGCCATCGACGGCAT
GCCGGCCATCACTGTCCCGGCCGGTTACGGCAGGCAGGGGGTGCCCTTTGGTCTCTGCTT
CGGCGGGTTGAGAGGGTATGAGCCGCGGCTGATTGAGATGGCGTATGCCTTCGAGCAAGT
TACTATGGTCAGAAAGACGCCCACGTTTTTGCCGTAGAACTGACACTGCGGAAAGGTGGT
GTTGGGACTTGTTTATTTTTGTTTCATGGTATTTATGCACGTCTATGATGATGTAACCAA
ATTTTGCAAACTAGTAGTTAGCATTTAAGCATAAACATTACAGTTAGGTGCACCGCTTTC
ACCTTTGTCTTGCTTTTTGCCTTCATAAAAAAGATACTTCAGCGTCAATTTTCATAGGAT
TCCCGTCGCACATCAAGCATCTTTTCAAACGATGACAAAAACTGACTGCATCGGACATAG
TACTCGTGGAGCATGTGCAGCTGGTCATACTTTACTCATTTATAAAGCAACGAGCACTAG
CCAGGACAACAAGTGTGCACAAGTATCACAGTACTAAGTGCAATTATCATGAGTGCAACT
GTGCACTTCTGTTCAGCACGAAAACAAAGTTGACCGCATCAATCCATTGTAAGTTTGAAA
TAGTCATCGTGTGCCTTCACTTCCTTCATAATGCGCAAAAATAATGGTTTTGGCATGCGA
AAACGACGGCAAAACCATGGATCATCTGAGAAAGTTGGGTTCGAAACAAAGTAGTCCTTA
TGCAGTAGTCGTGCTCAGGATACCCTATACCGATTGATCAACCTTCAGCCTTCGATTCAA
CCCTTGAAGTCGAGAATATGCTCCACTTGCCGGAGCATTTACTCTTGCATGTTCATGAGC
ATGATCATATCTACTTTTTTTGTTTGGATCCGATGAATCGAAGAAATCATCTTGAATCAT
TTGATCAAGCTCCATCGGTCTATACTTATGGTCCGATGAAGCACCGATATTCATTATTTT
CCCTAAAAAAATCACGAAAAATATAAGTCGAACATTGTGTCGAACACATAGATGCCAAGG
GAGAGCTCGAGAGTTGCTGGACGTACCGCGGTGGTGTCCAGACCAGCGACGATGTCCCCG
AAGATTAAGACGAGAGACAAGAGTGTTGTGTCGATGCTGGCGGCGCAGACGCTTGGAAGA
ATACAGAGCGCGTGTAGCGGCGGCGCAGCAAGACGGATTGTGTGAAGGAGGAAGAAGAAA
TGAGAGAGTAGTTGAATTCGATAGATCGAGTGGGGTGAATTTGGCGCAAGTTACAGTGGG
GTCATGGTATCGGGTCCGACGAGGCGGACACACCCGAACGTCCCATATCCGCATCATATT
TGGGCTTAATATGAGGGATGCCGGCCAGCTCAAGCGTTTGAGTCCCGTTTAAGGTGTCTG
ACTGAATCAACTTTTTATTACCGATCAGTGACCGGGTGCTTGTCCGGAGGTCATACCGTA
GATGGTATGGACAAATTCACTGTTTTGACCTTTTTGAAATGTTAAGCCGGATCTGACCCC
GATGGAGAAAAAAAATCGGATCTGTACCTTTTAGTACCGCCAGACCCTTTTGATGGTAGG
GTATGATTGACAACCTACCGCGAAGGTCTTTGGCGATATGAAAATGGCCTACCGTCAAAG
GGTCTAGCGGTAGCATCTGTAACCCTACCGCCAAGGTGGTCTATGATAGGCATGCGCGCG
CATTGTATCTACAACTTAGAATTCTTTTTACTATATGCTTGCAACCCTACCGCTAGGGAC
CTCGGCGGTAGGTTGTTATACCCTACCATCAAGGGGTCCGGCGATAGCAAAAGGGTTAGA
TCCGATTTTTTTCCATCAAGGTCAGATCCGGCTTAACATTAAAAAAAAAACCAAAAGAGT
GAATTTTGCCTCTTGTTATAACGTTGCTAAGAAAACATGAGGACTTGCGGTCTCAATTTC
CATAGGATTCCTATATAGTACGTGTGGAGCATATTTGCAGGCGAAGATAATGCAGCAGCT
GAAAAAGTGAGAAGTGCGAAAATGCGATGGATCCATCATACTCTTGGAGCGCGTGTAGTT
GATCATACTTTAGTACTACTTGTGGAGCATATTTGCAGCCGATTATGCAGCCAGCTGAAA
AGTGCCAAAATGGGATGGGATGGATCCATCATACTCGCTGGAGCGCGTGCAGCTGGTCAT
ACTTTACTCATTTAAAGCATCGATCACTATGTCCATGCCACGAACCACACCACCGATACC
GTCTAGCTCAGCTCAGCTCAGCTAAGCAAGCATGTCTTGGCTGCGAATGCAAGCTGTCGC
CGCCGTCCTAGCTCTGCCTTCATCTATGATATGTAACCAATTTTTGCAAACTACTCTCTC
CGTACCTAAATATAAGTCTTTTAAGATATTTTACTAGATGTCTACATACAAAGCAAAATG
AATGGATCTATACTCTAAAGTATGTCTATATATACATCCGTATGTAGTTTATTAGTTGAA
CATCTAAAAAGACTTATATTTAGAAACGAAGGGAGTAGTAAACATAAACATTACAGTTGG
GTGCACCGCTTTCACCTTTGTCTTGCCTTCTGCCTTCATCAAAAAGATACTTCGGCGTCA
ATTTTCATAGGATTCCCGTCGCACATCGAGCATCTTTTCAAACGATGACAAAAACTGACT
GCATCGGACATAGTACTCGTGGAGCATGTGCAGCTGGTCATACTTTACTCATTTAAAGCA
ACGAGCACTAGCCAGGCCAGCAAGTGATCACAGTACCAAATGCAATTATCCTGAGAGCAA
CTGTGCATCATCTTTGGGCCCAATATGAGAGATGTCGGTTAGCTTGGGCGTTTGAGTCCT
GTTTAAGATGTCTGACTGAATCAACTTTTTATTATCGATCAGTGACCCGGCCTCTGTCCG
GAGGTCATACCGTAGATGGTATGGCCAAATTCAATGTTTTGATCTTTTTTTGAATGTTAA
GTTGGATGTGCCCCGATGGAAGAAAAATTCGGATCTGTCCCTTTTACTACTGTCAGACCA
TTTGACGGTAGGGTATGACAACCTACCGTCAAGGTCTCTGGCGGTAGGAAAATGACCTAC
CGTCAAAGGTTCTAGCGGTAGCATGTGTAACCCTACCGACAAGGTGGCCTACGGTAGGCA
TACACGCGCATTGTATCTATAACTTAGAATTCTTTTTACGATAGGTTTGCAACCATACCG
TCAGGGACCTCGGCGGTAGGTTGTTATATCCGCCAAGGGGTCCGGCGATAGCAAAATGGT
TAGATCCGAATTTTGTTTTCCATCGAGGTCAGATTCGGCTTAACATTCAAAAAAGGTCAG
ACCGGTGAATTTTGACTGATGCTATAACGTTGCTAAAAAAAGTCAGAACGGTGAATTTGC
AGACGAAGATAATGCAGCAGCTGGAAAAGTGAAAAGTGCCAAAATGCGATGGATCCATTA
TACGTCAGACTGAATTAATTTTTTATGACCGATTAGTGTCCGAATGGTCTGTCCGAACAT
TTGAAACGGGTTTGAAAGGTCATGCCGTAGATGCTATAACGTTGCTAAAAAACATGGAGA
CTCCCGGTCCCAATTTTCATAGGATTCCTATATATAGTACTGCTTGTGGAGCATATTTGC
AGCCGATTATGTAGCCAGCTGAAAAGTGCCAAAATGGGATGGATCCATCATACTCGTGGA
GCGCGTGCAGCTGGTCATACTTTACTCGTTTAAAGCATCGATCACTATGTCCATGCCACT
AACCACACCACCGATACGGTCTAGCTCAGCTCAGCTCAGCTAAGCATGGCTTGGCTGCGA
CTGCAAGCTGTCGCCGCCGTCCTAGCTGTGCTCGCCGCCGCCGGCGTCGCGCACAGCTTC
GAGTACCACGAGGCCACCCTGGACGCCATCCAGCTCGGCTTCCGCAACGGCAGCCTCTCC
TCGGCCGCGCTCGTCCGGTTCTACCTGGACCAGATCGACCGCCTCAACCCGCTGCTGCAC
GCCGTCATCGAGGTCAACCCGGACGCGCTCCGGCAGGCCAACCGCGCCGACGCCGAGCGC
CGCCGCCGCACGGCCACCGGCACGCTGCATGGGGTCCCCGTCCTGCTCAAGGACAACATC
GCCACCCACGACGCGCTCAACACCACGGCCGGCTCCTTGGCGCTCCTCGGCTCCGTGGTG
AAGCGCGACGCCGGCGTGGTGGCCAGGCTGCGGCGCGCCGGCGCCGTGGTGCTCGGAAAG
GCCAGCCTCTCCGAGTGGGCCAACTTCCGCATCGTAAAAGATGGGTGGAGCGCCCGCGGC
GGCCAAGCACGGAATCCATACGTGCTCTCGGCCAGCCCGTGCGGGTCCAGTGCAGGGTCC
GGCGTGGCCGCGGCGGCCAACTTGGCCGCCGTTACGCTGGGCACGGAGACCGACGGCTCC
ATACTCTGCCCGTCGTCTTTCAACTCCGTGGTCGGGATCAAGCCCACCCTCGGGCTCACC
AGCCGCGCCGGCGTTGTCCCCATAAGCCCTAGACAAGACACCGTCGGGTACATCACTGAG
CTTTGAAATTTTTAGTCAGCATAAAAAATCTTGGACCTCACTGATTCAGTATAAAATTTC
AATTAAGTTTAGTCAGATTAAATTTAGTTTGGATTTAACTTGAATCCGACCGTGGATTTC
GGGATTATGAAAAAATCGTTGCAAATTTGAAATGTTCAGCATGCTATATATTTGCAATGT
TGCAGACCGATGTGTCGGACAGTGTCGGATGCAGTCCACGTGCTGGACGCCATCGTCGGC
TACGACAAGCTCGATGCGGCGGCCACTCGAGCCGCCTCCAAGTTCATCCCTCGCGGCGGA
TATCTGCAGTTCCTGAAGAAGGATGGGCTGAGAGGGAAGAGGATCGGCGTCCCCAATGAA
TTATTTCAAGGATTTGGAGAGAAGCAGACGAGTGTGTACAAACAGCACCTCGCAACAATG
AGGTTATCATAGTTCGGATTTCCCTGACTAGTGTGTGAATTATACATGGCAATGGATTGA
TTATGAATTTCGTTGTAGGAAACACGGAGCCGTGGTGATCGAGAACCTTGACATCGGCAT
CGGTAGTGAAGATATTGTCACCGATGAGTGGACTGCAATGCTAACAGAGTTCAAGTTGAG
CATAAACGAGTACTTGGCGGACTTGTCCTACTCCCCCGTCCATTCTCTTGCAGACATCAT
AGCTTTCAACAAAGCACATCCTATAGAGGCAAGCATGCAAAAACAAAACTTGTTCTAGCT
TTCATCTCTTTCAGTCTCGTTATATAGATTCAAACATTGTAGAATCATGGTTGCAGGAGA
GGCTAAAAGATTTCGGGCAAACAATCCTTATCTTAGCCCAAGATACAAATGGCATTGGTC
GTGTTGAGAGAGCTCGGATCCGCTGGCTGAAGGAGCTCTCAGCGAAGGGGCTGGAGAAGC
TGATGAAGGAATACCAACTCGACGCGATCGTCGCGCCCGAGCACTATGCTTCCCACCATC
TCGCCATTGGCGGCCACCCCGGCATCGTTGTGCCGGCTGGGTACAACGAGAAGGGTGTGC
CTTTTGGGATATGCTTTGGTGGGCTGCAGGGATACGAGCCGAGGCTGATCGAGATGGCAT
ATGCTTTCGAGCAGGCTACCAAAGTGAGAGGGCCACCCATGTTCAAGCCTTAGCTTGGTT
GCATAACTTTCTTGAGTAGTCATAATGTGACGCACCATTGCCCAAAAAAGTATCCACTTG
CACTGTTTTCTCTTAGTGTAAAAGAATAATTCTGAAATGTTACTTCTTGAGCCAACAAGG
ATTGTATGCAAGTGCTACTCTGAATAAATCGACAATGTGGTTCTAAAGGTGGAGAATTTC
TTTCTTATGTATTTCTCGATGTTCTTTTATATGTGGTTGTTGATACATATGTTAGTTGTG
AAACTAAACTTCCATAATCAAGTACTGTTGCAGTACCACTTTGAAATGCTACGGCGGGCT
ATATGGACATCCACCACATGGTTGATTGATACTACCAAAGTGATGATAAGGTCGACCATG
TTCAGTCCTCAGCTATCCAGGAGGCACAATCTAAGAGAATTACATATAACTTAATGAGTA
GCGACAATGTAACACTCTACGCCCCAAAGAGTTTCACTTGCATTTCTTTCGG