morexGenes - Barley RNA-seq Database

Contig contig_39819
Source Contig contig_39819
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39819 (7815 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_39819

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55274	1	783 bp	MLOC_55274.1	Available	Available	None
MLOC_55275	1	1680 bp	AK376476	Available	Available	None
CDS Structure of MLOC_55274

CDS Structure of MLOC_55275

Contig Sequence (7815 bp)

>contig_39819 7815 assembly3_WGSMorex_rbca.fasta
AGGTTTTAAAACCTAATGCAACCACATAGCATGACTACTAGCAATGCACCACTCCACTTA
TCAACACATAGCACATCACATCACCACATCACAAGGATCACACCTACACATAAGCTCACA
AGGCAATAACACAAGACATGGTATGAATGGGATGGCATGGATGCATGCATACAAAAGAGA
ATAAAGCAAGGGAAGCATCACATGAAATATATGCATAGCACTCTCTCATATCAATGATAA
GGTGGACCCACATAGGTAAGGTTCCAAAAAGGGAAAGATACACTCTTGGGGCATTACAAT
ATCTCTCAGTACAATACTCCCATTCCCAAGCGCAACATGCATTGGTCCTGTGTTGCTCCT
GCTCCTTATGAGGCCCCTAAGAAGGGGCGAAACCCTAGGCCGGATGAGCATGCTAACTAC
ACTCCACATGGTCCTGGCAAGAAGTGTTCTGAGGCCAGTTTCACGAGAGAGGAGAAGAAA
TATTTGTGCAAGACCTTGTTCAACATGTTCGCGATGTGTTAGTCCATTCAGCATTGTCAG
GTCAAGGAGATCAACAAGGGGAGCTTGAGAGGCGTCAGAAGAAGGTTGAACGGGGTCGTG
CGGGAAAGAAGATTTGCCTAGGGTGTGAGGATAGCGACAATGTGGCCACGGCTCGTTCTT
TCTCGATGGCGGGGTGGGACTTCGATGATGATGATGCTTCGAGCACGCCTCCTCTTGTCT
AGTGTTTTTATTTGCATCGCCTTTTCCCTTTTTGTTGTGATGACAAAGGGGAGAAGTGGT
TTAGGAATTTCTGAGTGTGTGAGATCTTAAGACCTCATTCTACTGTTATGGTGTTTATTT
GGGCTTGAGATATACTTATTTGCTTTATGTGGTGTGGTGGTGAGCTACTCTATTTTATCT
ATGTGTGGGACTATGTGGTTTATGGACCATCTATGCTTATCTGTTGTTCATCTCATGGCT
ATGGTCATGTTATTATTTTTTATGTCTCACTATCCTTGCTCCCAACACTCATTGCATGTG
ATCTAGGCACCGTTTACATTATTTATGTTTGATCACATGGTATGTATTGATCTTGGGGGA
GCCTCTTGTGTGTGTGCTTGATGCATACTCAAGCATTTATTATTCAGCCCATGTACACAT
GTAGGGGAGTTCCTTTGATCAATTATTGTTTCCCTCATGGGTTTTGAATTTAATTTATCT
TAAAGTTGTGTCCTTGGGGGAGATTAAAAGCCCATGTGCCCCTTAATTATATTTTTGTGT
GATGACAATATGATTAGATGAACTAATATCGGTTGTTGGAGTTTATCTTAGGATATTGGT
TCCGCGAAGTTCTTGATGGAGGTGTGTGACCCCCCCCCCAATTCAAGAAGATCAAAGGCA
TAGCTTTTCCGACGACTCGAAGGTTTTCGTTTTGGTTCGATTTGAGTCGTAGGAAATCCA
CACTATTAAGAGGGGTCTTCATGGATTTGTGTTGTGTGGGAATACCTCCAAAACATATAC
ACCAGCCTTCCTATCACTTCCACCATCCATATGCCCTTTATGTGTCATGCCCGGGTACTC
ACCTAGTTTCAACAGAGACTTTCTGGACACCCCCTGTGCACGGGGTCTTTTGACCTCCGT
GCACACGTGGCATCCACCAATCAAGAACACTATAAAAGGCCATCTTCTTCCTCCTCCGTC
CCTAAGCCTAATGTCTTGTTGAGCTCCTTCACTATTGCACCTCATTTTGCTAAATACTCT
CAATCCCTCCACCCAAACCTGTCGGTACTTTGGAGATTGGGAGAGCAAGACCCGATCTAC
ACTTTGATCAAACCAAATTCATGTTGCCCACAACATTTGTTCACCATTGACTTGTTACTC
TTGAAGTTTGGGCTCCTAGGCGGTTAGAGGTTCCTCCGGAAGCTTCCTTGCTTGTGGCGT
GCTCCGGAGAAGTTTGTAAAGGTGTAGTGGTCGCCTTCAAGATCAATCCTGAGTGATTCA
AGGCTCATCCGTTGGGGATGACTCGAAAGATATACAGTGAGCCTTCCGTGACGTTTCGCA
AGCTTCGGCTCCCGCACCACTCTAAATGGATATTAGCTCTTCCCCAAGGAAGAGTGAACT
TCAGATAATATCTACGTCCTCGTCTCATTTGTTGTTAATCATTTTCCGCACTTTACCTTG
CTTTGCATGCTAGTTAGGTTGTTAATTATCTTTATGTCTAGTATATTTAGTACTACTTGG
GTTTGTCATATAGATTGTGTTCACCTAGTTGCATATCCAGTGAACCCTATATATCCGCTC
ATCCTTAAAATTGACAAACAAGATTAAAGTTTATAGTCTTCTATTAACCCCCCCCCCACA
CCCCACCCCCCCTAGCCGACCATGTCAATCATTTCCATTGATATCAAAGCCTCGTGTTCT
AATATAATGTTTTACAACCTTAGAGGATATGAAAGACCATGAAGAAGTGGATGGTAACCT
ACCGCTTGCGAAAATACATTCGCCAAAAGAGCATGCAACCGTCGAGAGAGCGTGGAACGA
CGCCCAGAGAGCATCATCCGTCGAGATGCACCATGCCGGCGCCACTGGCCTATGTCGGCA
TCGCACAACCACCTAAGGAGGCCGCCTCGCAACAAGGGAGAAGAGGGCCCCGCCGCCGCC
TACACGGCTTAGAGGAGGGGGGGGAAGGGGGGTGTCGTGCCCCCACGGCTCGCGGTGTTC
GGGCGAGATATGTAGAAACCAAAGAGAAAAATGGTCACGGGTCAACTTATAGTTGGATCG
TCTCCAAACCCATCCGAAGCTACCTACACTAGCTAGTTTCCACGAGATTTTATTCGGGAA
ACGGGATTCAGATCTCGTGGCGACACGTTCCTATATGCTATGCCTGATGACTCCTCCATC
CCATCGTCCACGGCCAAGAAAAGAAACGAAGAAGCAAGAAGCGCGTGCATGTTCTCTGCA
TGTTCCTTCCCGCCAAGTAGCCAGCGAGAGTGTGAGCGCCAACGCATAAAGAGGCAACGC
CACTCCGATCTCTCCAGACTCCACCTCCTAGATCATGATGATGGCTCAGCGCAGCGCGCT
CCTCCTCCTCCTCCTCTCTACCATCTTCGTCCTCCAGCTCCTCCTCCCGGCGACTAAAGC
CGCAGCACCGGAGACGACCGCCTCGCCTCTTGACGACGGCGGCAGTGCCGCGGCGCAGCG
ACAAGCGTCCTCGCAGAGTCGCCGCCGCCGTCCCACGGCCGCTAGGAGGCTGCTGCTGCA
GCAGCCGCCAAGCGGCGCCACGGCCACCAACTCCTTCGACGTCAATGGCGCCCGTCACGC
GGCTAACGCGAAGCCGAGCGTGGAGTTCAACGCCGGAGCGAAGCCGCTGCCGCCTGTGGG
GAGATCAAATGCAAATCCCAGGAATAATTAGTTGGTTGATCATCAGCTAGCTAGCTAGCA
GGCGAGCAACCTCTTTGGTTCCCTCTCTTAATTACCTAGCGCTCAGGACAGGAGTAGTAG
TTGGAGACTATTTTGTGTGTATAGATACTAACTTGATTTGACTTCTGCTGTTAATGAAAA
CTGTTTTGATGGATTTCGATTTCCTTGCCTCCAATTTTGTTTATTTAATCTCTCTTGAAT
TAGCACTCTTATTCTAAACCAGCTTCACTTGTGCTAATTTCAACCCTCTTGGATCATCAT
TATTACTCTGAATCGACAGCACATCCAAACCCTAACCCAGAAAGATCCAACCCAAGATTA
ACAGAAACTTGCACAATAGACAACAGACTAAACGAAACACTATATTTAAATCAATAAATA
AATGCAAACCAATGTTAGTCTAAACGATTTAAATTAAACAAAAAACATGATCTATGAGAC
TGTAAGTCTATAATATGTGTTCCAAATCCACTGGTAAGTTCTCAAGTTGAGGAGCCCAAT
GTTCCATCGTCTGGGCAGCTCCTCAAGCACCAGCGTTTGTCTGCCTCAGGACCAATTAAG
GAGCTACAGATCAACGAAGAAGAGCCCTAACCACTTCATATGATGAGCCTCCTCATACCA
AAACGAAAACGGAAAGTTATCAGTTATACATCACACAAACCACCAACCTATTCTACAAAC
CTTTGGGATTCATAAGCATTGATGATCCTGCTTTGCCTGCAGACCTGCCAACTAACACTC
TGGAATTATTGCTTAATATACAAAATTAGGCCGAAACTGACACCTTTTTAGCCTGACGGT
TGCTATGTAATCATTGCCGCTGGACCGACGGTGATTGCTGCATCTGAACCGGATGGAAGA
ACCCAATGCCTTGTGTTGGAAAGAAACCAGTTGATGTTGGAGATTGCTGCGGTGCCTGTG
GAGACTGCTGCTGCTGCTGCTGGGTCTGGCTCTGATTCTGGGCTGGTGAAAGAGGAGGTG
GAGGTGGCGGCCCACTTGGCCTTGGAAAGCCTGGAGGTGGCATGTTCGGCAGTGGAGGTG
GCATGTTCGGCAGTGGAGGTGGCATAGAGCTGGCCAGCATCCCAAAAGGTCCCATTCCAA
ACATTCCTCCACCATTTTGACTGAATTGCTGCACAAGTGGTGGCAGTGGAGGGGGAGGTG
GTGGAAATGCACCCGGTGCTTGATTTGCCTGCAGCGATGGCTGCATGCCTCCAAGAGAAG
TAGGCGCTGCTCCATTCTGCTGTGCTTGTGGCAATTGCCCAAAGAAAGAGGGAGCACCCA
TGTCACCAGTCTGCGTAGGATTCTCGATTCTAGGCCGCTTTGGTATCTGGAACCCTGGAG
GCCCTTCCGAGAGCTCTACGGAAGGCGAGCTGTTCATGGAAGCAGCTTGTTCAGCAACAA
GGGAGGCCAAAATGGAGGAGAGCACCTGCTCCGGAGATGCCAAAGATGCAAGTTTATCTG
CCATAGCTGCTGCTGTTTTCTTGGGCTCATCATCTGCAGCACTGGCTGTGCCTGAAAGCG
GGATTGCTGGATGTGGTGGTTGAAACTGGGAAGTTATTGGGCTTATTGCTGCATTCTGCA
TCATCGCAGCAGTCTGCTCTGACGGAATTGTGGTCATGAGTGTACTAGAACTAGACCATG
CCCGATTAGTAGCATGGGCACCACCAAATCGTTGTCTTAGTTGCACGGCATGTTCAGCCT
CTGCTCGAGCAACCTGTGTCAATTAACTCTAATTAGCTGCAGGTCACTTCAGCTATTTTT
CAAATAACTCCTATAACACCACTACAGAGACAGGCAAAAATAGCGCAAACTGAGATGGTA
GATAGCAATGTTGAACAAAGTTAATTGTAACCTCATACAAAAATCCAGCAACAAGTGACC
AGAAATGGATACAAGATATGCAGAGAAGCTACATGTTTGGGTTCTGAACATGTAAACATA
TCCCTCCCACGAGAACCCCCGAACTGTCTAATGCAAGCTGGTTAGCTTCACAACTCAGAA
GAACATGTTACCTGAAGCAGTCTAAGCGGGAGGTGGCCTACTGTATTGAAAAAACAATGG
GAGATTGCAAGCCATAAGAGGCAGATTTGTGCTTGAAGTGGGAAGTTAAAACATGTCAGC
TAACATGTACCCACTTCCCAATCAGACCATGGCTAGCGTACTAGCTTCCATTACAAAGCA
GAACTGCACTGCAGATTCACTAGTTGTTACCGACCCTATTACAGCATCTCTAGCAGAACC
CCTAAAAGGTACTCCCTCCGTCCCATAATATAAGAACGTTTTTTGACACTATACTAGTAT
AGAAAACGTTCTTATATTATGGGACGGAGGGAGTAGTATATTTGAGGGGGGGTATTTCTG
TTTAGGGAATTAATTAACCCCTAGCTAGCAGATCCCCTAAACGTAAAACTCCTTCAAATT
ATAAGGAAACATCCCTTGAAAAAACACCCTCTGGACTATATTTAGTCCAACGAGGGCAAC
TCTCAGGATAAACAGGAGAGACGCGCGTGCCTGCATGGCTCCTACAAGGCGCTCCTTGAC
GACCCGGTTCCTATCCAAGCCACCGAGTGGGCGCGACTGTCGGTGTTCGAGCACAACCAG
TACCTCGAGGAGGGGGGAGTCGTCCCCCGGATCCATCGCAGGGAAGAAGGCTTTCTTTGA
GGAGAACTACGGTAGGAAGCGGAAGAGAGCTGTTGTTGACGAGGATGACGAGGGGCATGA
TGTTGATGCGGACGCTGTGTATAGCTGCGTTGGGGCCTGGTCAGCAGACCCCTCGTGTAT
GACGGATGAGCCTGCTGGGGGAGGGGGAGGAGACCCACGGCGTGGATTGGGATGCTCCGG
ATTGCGGTGCCATTGTCAATGTGTCTCAAGATCTGACAACCGGATTGCAGCGCCATTGTC
ACACAAGCAGCATGATGAGCTGCAAGTTGCTGAAGCGACAAACAGGTTGAAGTTGGATAC
TGGATGCATCGTGGCTGCTGTTCATACAGTTGTGAAGCAACCATTGCAGGTGACTTCTCA
AACGGGAATTTTGTTCAAAGTGTACAGTTTGATGGTACTAAGTATTTCAGAGCATGTGAA
TTCTTTGCACGACAGTTCGATTGTTAATCATGGCATACCAGATTCTGTCAAGAAAAAGAG
GCATCCGAAAAAAGAGGGTATATTAGAGCTGTGTGTGTGTATGTAATGTAGGTGTTTGAC
GAATTGTGTGAGCCAAATATAAATATGGGGTGAGTTTAGGGGATCTGCTAGATGAAGAAA
ACTTTAATCCCCTAAAAATTATAAGGAAATGGGATAAGGGATAGGTTTTGAACTTCTAGG
ATAGGGGGTCTGCTAGAGATGCTCTTAGAGAGGATTCCCTTTGCATATAAACGTGCTCCC
TATATTGTTTTCTTTCTTTATCCGTTATCACGCTACTCAATACTCATCCAAAAAATTGCA
AATTCAACAGAATGTCAATGACACGGTAAAATTCTAGCTATGCCTACATGCCATGGAGCT
CTTAACAAACATCAAGTTTCAAGAATGGTGCCCAAATCATCGCGAGATGGACAAATGGCT
GGCACAAGGCAAACAGGAACCATAATGAGGACGCTGATGAATCCAATAAAATGCACGACA
CAATCATGTATTTAGCTAACGAACTTTAACTTCTAATTGGGCAATAAGAGCAATAGGCAT
CAGAAAAAAATAATGACCACAAATGTGATCTCCCAGGGCATATCAATAGTTCATGACAGA
TGAAAAAGGATGATCACACGTAAGTGGGTATGAGAATATTACTTACTTGCAACTGATTGC
GAAGAAGCTCTGACTTTGTTTCCTATTACATGCAAACAAGAAAGAATATAAAGCTTTGTT
TACAAGCTAGATGGTATGCATAAAAATTCAGGATAGAACATTTCAAAGATGATAAAATAG
GTGCTAAGGACCTCTTCACTAAGGGCTTCTTTTAGGTTATTGATCAGGGTTATCCTTGCC
GCATCAAAACTTTCAAGTTGCTCAATGCACTGCTTCAGAATCGCTTCCTGTTCTTGAAGG
TTGAATATCAGTGACGACGCTTGCTGGATATCTACGGAAAAAATTACTCAAGCATTAGTA
CTATCTATTTGATACTTATACTCGGGTTATGAAGTGAAAACAGATTATAATGTTGCATTG
TATTATACTGTCAAAGCATCAGAGTTTTTTTCGTGTCCAGTTTTTTCTTACTCTGGAAAC
CCAGAATTCTAGTGCAATTTCAGGTTCCAGATTATCAGAGGTGCATAGCTCAACAACATG
GCTAGGGGAACTACTAATAGGAGCCTATTCTTGTGCTCTATAAACCATGCAAAATATATA
CTCCCTCGTTCCTAAATATAAGTCTTTTTAGAGACTCCATTACAGACTACGTATGGAGCA
AAATGAGTGAATCTA