morexGenes - Barley RNA-seq Database

Contig contig_39799
Source Contig contig_39799
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39799 (7587 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_39799

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55254	2	973 bp	MLOC_55254.2	Available	Available	None
MLOC_55253	4	2145 bp	MLOC_55253.3	Available	Available	LOC_Os03g18200.1, FRAME:+3, EVALUE:0.0, 13103.m02180 protein heat shock protein DnaJ, putative, expressed
MLOC_55255	1	230 bp	None	Available	Available	None
CDS Structure of MLOC_55254

CDS Structure of MLOC_55253

CDS Structure of MLOC_55255

Contig Sequence (7587 bp)

>contig_39799 7587 assembly3_WGSMorex_rbca.fasta
TTGTTACCGCTACTTTTAGTGCTTGCTGTTATTACCTTGCTAAAAACTCCTTATCAGAGC
CTTCTGCTCCTCGTNNNNNNNNNNNNNNNNNCTTATCGAAAGGATTACGATTGATCTCCT
ATATTTGTGGGTCATCAATCGACGAGCGAAGATGAAGATCCGCTCGGAAGAGCTGAAGTG
CATCCATATTTGAAGACGGTTCTAGGGCTACTTATGGTGTCCTGGCTAAGGGATCTCTCA
CCACATCATCTCCTGGCCAGGTGGGCCGAGTTGAGGACCTGCATGTCGTTTCAAGAATGG
CCCATGCCAGAAGGCCCCTGGCGTATCAACGAAAGGCTCCCAAAGACTTGACATGTAGCC
CAAGATGTCAGATTCGTCATAGACTCTATTTCCACATACGTAGCCTACTAGGACAATGTA
ACCCTAGCCCCCTCGGTATCTATAGAAATTGAGGGGAGGGCCCATAGAGGACACACAATA
ATCTCAGGGTAGATCATACGTACTAGAGTACTCCAATCAAAAGCAATAAACACAAGCATG
GCATAGTATCTTAACTTTTAGGAGAGCCCAAATAGGGCTAAAATATCGTGTGCTTGTTAC
TTTCATATTTGGACGTTTAGATCGAGACACCCTACCCAAGATGTGCTGGATTTTGCTTTA
TCACAAGGTGAAGAGTCATGTCGCCACCTTTATCATTGTTCTTCTAGGTACTAGCCACTT
TGGCCGCGTAAGTCGAGCAGTAAAAAAGACATGACATCATGGGATGCCCACAAGGGAGAC
TCACCAATCCTCGAGGCGAGGGGGAGGGGTCTAGCGATGACTGGGGCAGGTTCCTGGGGA
CACCGGTGTTTAGGGCCTCCCTAGCTTTGAACACGTGGCGACCCCTGTCTGCATTAGTTG
ACACGTGCGGCTAGGACGCGAGCATGACCCATCCCCCCTAATCTGGGGACCCTTATCCTC
TGTATTGCCAAGGGGATGCCGCACCTATGGTGTTCCAAAAAGTGCATGGACATTTTAAAG
ACATGTGTGTTATGTTAGAGGGAGAAATATGGAGTGTGGATGAGTAAATATATATTGGGT
AAATTTAATTGACTATATTGCATGTATCGGGTCTTAACACTAAGAGCCCGCCCCCTCCTC
TCCCCCGTCGGCTGCATTGTTGGCGACAAGAGGAATGGGACCCTTCGTTTCGTTTTTCTT
TACCTCATTAGTTTTGTTTTCGTGGAGACATCGAAGAGGTGGTAGCGACAAATGTCGTGT
TTGAATAGAGTCTTGATGGCCTCTTCTATCTTGGCGACATCCGATCCGACGCAAATAATG
GCTCGTGAGAATTTGTGTTGTTAAATATATTGGCTCTCTTTGAATCTTAGTCGTTGCGTA
ATTGGTTGTCTTTTGGTGTGACGACTTCAGCATCCTCTTACGTGTTGTCATACGACATGG
TCTAATTTCTTTAACTTTGATGTCTTTCCTTAAAGAAAGAAAAAAAAAACGTCTAAGATG
CTCTTCATCCTGCGTGGCACTTGGTTCGAGTCGAACACTGTGATCGCCACGCACACGGGA
TGGAAAGCTGTCACCCCATTGGTCGAATTCGCTGGAGGACGCCTCCTCGCGCCACGTGGA
CTCGGTCGCGAAACATCTCGATTTCTCGGCCCGCTTCTCCATAATCGGCGGCACTCCCCG
ATGGCTACAACTCTCTTTCCGCCACCGCTTCCCTCCAAATCGAACCAAAATTCAACCCGA
GGAATCCCTAAAGAAGCGAGCCTGACCGATAATCTTAACCCAGAAAGCTCAGCGCCGAGG
AGCGAAACCCGAATCGAAGCAGTGCGCGATGGGGATCCCAATCCGATCTCTCCTCGTCGC
CTCTCTCGTCCTCAGTTCGATCGCCCTGCATGTCGCGGCCAAAACCTTGGATCCCTACAA
GGTGAGTGATTGCGTCAAAAATTCGCATGATTTGGGGCTATATAGCTAATGTGATTTCGG
CTTTTGACAAATTCAATGTCAACTAAACGCACCATGAGCTGAAGCGATGTGTATGAATGC
TTTTCTCAGAGGCTAGAACCCGATAGTGTACCATGGTGGACCTTAATTTTGTTTATCGGT
TGCCGTTACTAAATGTAGAGGGGCTGAAAGTGATAAAACTGTGCTTCCATTTCAGCCGTT
TTGCACCAAATAGGCGTCCAGATGCTTATGAACTCTGACATCCCTTCTTAACATCAAGGT
GTTAAGAAGGTGTTGTTAACACACTATTGGTATATCTTAACATCACCCCTTCTTTTTCTG
GTTGCAGGTTCTTGGGGTTGACAAGAATGCCAGCCAAAGGGATATTAAGAAAGCTTTTCA
CAAGTATGTTTCCAGTTTTTCGATTTGAGGAAAACATATTATGATTATGTTTTAACCCTC
ATAGTTTAGCATCCGATTTTTATTTCTATTTTCTGGTGTCCACAGGCTTTCGCTAAAATA
CCATCCTGACAAGAATAAAGAGAAGGGTGCACAACAGAAATTTGAAGAGATAAATAATGG
TAAGACACCCAACTATGTCTGTTCAAAGTACCGGTATTAATACCTCGATTCATTTGGCAT
TTTAGACATAGTTCAGTTACCTCCAGGCACACTCTGACTCTGAGTGATGCATGTTGCCCC
TTGAGCTTTTCAGGGTTTACGAAATTTTGTCCAATTCATGTTCTTGCCTGTGTTTATTTT
ACATTTGCTTCTCTTTGCAATTGATTTATCAGTCCACCAAGGACTTCTGTAACTCCTGTT
AGTGAATTGTTTTTCATTCTGTGGTGAAGAAGAGGCAATAAATTGAACTATGAGCGCATC
CTTTACTGTCACTCTGAATTTTCTAATGTGCATTGGTGTCATGTTTGCAGCACATGAGAT
TTTGTCCGATGAAGAGAAGAGGAAAAACTATGATCTCTATGGTGATGAGAAGGGTAACCC
AGGTATGGGTGCTGGAAATTTTGGGAGCCATGACTTCACTGGTGGTGGCCCCAGGACTAC
CTATTTCTCATCCGGTGATGGATGGCAGACAATGGGTGGTCAGGGAAATTCGAAAACATT
TTCCTTCTCATTTGGTGGCAACCCTGGAGCTGACGGTGGCAATCCATTTGGCTTTAATCT
TGGTGATGTTTTTTCCAACATGTTTGCTGGTGGATCAATGGGAGGTGGCCAGCATGGTGG
ATTTGCTGGTTCTGCCAGACCCAGTGCAAGAACTTCTGGTCAGCAGAAAAGCCCTGTCAC
CATTCAGGAGGTAACGATGCAAACATTCAACAAAGAAATAGCTGACCAAGGAATAACTTG
GCTCCTGTTATTCTATACACAACAAGCAAAAGGTCAATTTGTGCTTGAAAGTGTTCTGGA
GGATGTGGCTCGTTCATTGGATGGTGCAGTGAGGGTAAGCTGATTAAGATTATATAATAA
TTCTGGTCCTTTACAGTTAATATATAGCAAGAATAGCTTATATAGTTACTCTCTTGATGC
AGGCTGGCAAGGTAAATTGTGATAACGAAAAAACCATTTGCAAGAAATCCGATGTCTCAG
TTGGAAAATCGGCTCGTCTCTTCATTTATTCGTACAGCACTACGGAAAAAGGGTCTTTGC
ATGAGTATTCTGGAGACAGCGATGCTAAGAGTCTGAAAACATTCTGTCAAGAACACCTGC
CGAGATTCTCCAGACGGGTTGATATTACCCAGTTTAATTTCCCTTCGAATGCCTTACCAA
ACCTTCCTGAAGTGCTCTTGTTGTCAACAAAGAAGGACACACCAGCGATGTGGCGTGCAG
TCAGTGGGATGTTTCGCAACCGTTTGGTTTTCTATGATGCAGAGGTAAGAATTTTACCTT
TTCATCACTGTTCTGATTGCTTATCTGCCTCAGAAAATTAGGTCATCACTGCACTGGCAC
TGGTCATTCACCTTTCATGTGAAGGCTTGGAACAGAAATTACTATGCAGTCTGTTTTCTG
AAGCAGTGGTTAATGGGATTAATTTATTTCTAAATTTAGGCATTACTAATATTGTTTGTA
CCGAGAGAGGCTAGTCATAGCTGTGCTGTATCTTTGATCTTACGGTAAAATTTTCCAGAT
TAGCCATGTCCGCTAGTAACAGTTAAGGACCAAGAACATCTATTTAATCTACTCTTACTA
AACTTTTCTTTTTTCCTTTTTAAGGTTCAGGATGTTTCTCTTCCACTGCTCAAACGCCTT
GGCGTGAAGAATGTCCCAGCGCTTATTGGTCGAACCGTTAACGATGAGGTGCAACTTCTG
AAGGATGGTATTTCAGTGAAAGATCTCAAATCTGGTATCAAAGAATTGAAGACTCTGCTC
GAAAGTTTTGAGAAGAAGAATAAGAAGCTAGCATCGGAACAAGCTAAGAAACCTGCCAAG
GCGAGTGAACCGAAGGAAAACAAAATCCCTCTCCTCACAGCCTCCAATTTTGAGGAAACC
TGTGGAGAGAAGGCTCCAGTATGCATCATCGGTGTTTTCAAGTCCAACAAAGCCAAGGAA
AAGCTGGAGAGAATCCTGTCCGAGGTTTGTTTTCCCCCCTTAAAGCCAATTTGACGATGT
GTCGATGCACCAAACTGTTAATTCTTCCTGCCTAGCCACATTATCTATGTTCTAACGCAT
GTCTTGTCGTTCGTGATGTTTTCTGCATTCAGATATCTCAGAAGACTCTGATCAGGGGAC
AGAGCTACAGCTCTGGAAACGCAATCACCTACGCCTTGTTGGACGGGAACAAACAATCTG
CGTTCCTGTCCGCGTTCGACAAGTCCGGATACAAGTCGTCCGATAAGCTCCTGCTCGCAT
ACAAGCCTCGCCGAGGGAGGTTCGCCGTGTATAAGGGTGAGGTTTCGATGGAAGAAGCTG
AAAGGTTTGTGGCTTCTGTTCTGAATGGAGACGTGCAGTTTTCGGCAACCGGACAGAAGC
CAGTTCTTAGGTAGAAGAAAGAATAGGGTTAACTCGCAAGCATTGTTTTCTCGAAATGGT
TGCAAGTAATGAAGTAATTTAGTCCTTAGGGGATGTAGTGTGTGACCTGGGAGGGCCTGT
ACATAGTTGAATCAAAAGAGTAAAATGTGAACTGTCGACTCAGATTTGTGGACTGGGTTA
CGGGAATACATGCTAACATGTTACCATATATACATGTACATCTTTCTCTCTTTTCTTTTT
TAATAGAACATCCTGTGGTCATAAGTCTTTTTTTTAGCAGATGCTGTGGCCATAAGTTTA
TTTTTATTTTTATTGAGCATTCGCTGTGGCCATAAGTGTGTAGAGGAGGTGTCGATGAGT
TTGTAGCCTGTTGATACCGTGGGATAGTAGAGTAGTCATAGATCCTTACCTAGGTGGTGT
GACAATGAACAAAGAACAATGGGAAGGGAGTCTTCCCTATCTTTTTTAATACGGAGTATA
TGATACACACATTTGTGTGTATTTGAGAAAAGAAAAGTATGTGTGTATTTGAGAAAAGAA
AAGTGTATGTGAAAGAGTCTTTTCTATCCTTCTTTAGTACTTCCTCCGTTTCTAAATATA
AGTCTGTTTCTAAATATAAGTCTTTTAAAAGATTTCACTAGACGTCTACATACGAAATAA
AATGAGTGAATATATACACCAAAGTATGTCTATATACATTCATATGTAGTCCACTAATGA
AATCTCTAGAAAGACTTATATTTAAGAACGGAGGGAGTACTTTGTTTGTCTCAAAATAAA
TGTATCAAGTTTAGTAAATTTTATACTAGAGCTACTATAAAATTGAGATATTTATTCTGG
GACGGAAAGCATATACGCATACTCGTGCTTATTGGAGAAAAGAAAAGTGTGTACAGCGTC
TTCGTGCTTATTGGAGAAAAGAAAAGTGTGTACAGTGTCTTCACTACGATGCTACTACAG
CGTACCGTTAGCATCATCAAATCGGCCCGGCCCAACAAACTGCCAGATGTAAGCAGTCGC
CCCCCTACGGGATGGCCTCACAAATTCTATCTCTTCTTCCCTAGAGCACAAAATGCAGTG
GCCGAGCAGGTGAGAAGAAGATGGCTGCCACCAGCCTCAGTTCCTCTCCCTCCAAGGTTG
CCACTGCCAAAGTAAGCCCCCGCTTCATCTTCCTCCTCCCCCTCCTCCACTTTCTAGGAA
TCGTGTCGTCGTTTGAGTTATAACTAAAGTTATGCCGGCCATGCCTCTTGTTGTAACGAG
TTTCGTGCACGAGGAGCCTGAATTTTTCTGCTGCTCAGTTCAGTTCGTGTCTTGAATGCT
AACGCTATCATCCAATTTAGGCATGAATTCATCTAGTAGTTTGGACTATCTAGGATCATG
CCAAAAATTGTTGGCGAAATGAGATACTTTGCTAACTGAATCTTTGGTTCTTGGTGCAAC
CGGATGTGTATGTACAGCAGATAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGC
TCGCCTTCTGCTCCAGGCATGCTTTCCACAAGATAGGAACCGCTGCAGCTCCGCAGAGGC
CTCAGAGCGAGCTCAAGCATGCAAGACCCTGCGCGACCACGGACAACGACCGGGCGGCGC
CGGTGGAGGCGCAGGAGGAAAGCGCAACCATCAGCGCCGGCGTGAACCCGGTGGCGTCCG
GCAACGGCCAGCAGCCGCAGCCGGGCGAGCCGCCGAAGCGGGTGCCGCTGACGGCTCGGG
AGCGGCTACGCGCGGCGCGCGTGCTGGGCAAGTACGCGGAGCCGGGGGGCGGCGGGGCGT
CGCCGGCGGACAAGAAGGGCTCGTCGTCGTCGTCGTCGTCCAAGCCGGAGTTCGGGAGCC
GGGTGCTGGACGCGCTGCGGGAGACGGACGGCGGCAAGAAGGGCGGGCGGAAGCGGTCGG
GGCTGCCGGAGGCGCCGAGCAACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGAAG
GGTGGACGTTCGACTGGCTGGCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCGG
CGTCCTTCGGGATCATCACCACCGTCATGTTCGGCACCACGTACGTGGTGTGGAAGCTCG
GCGCCATACATTTCAACGAGTACTGATAGTTATATAAGCCTGTCTAGCTTTTCTCTGCGT
GGTTCTGTACAATAATGCCGTCTATCGTATGATGAGGCAGATTTTGAGCACATGAATACA
CCGTGATTGTACTACGAACTAAACCCAACGATTTTGCTGAAATATTATAGTACAAAAGTT
TTACATATCTGTTAAGTAAGTTCTCTGTGACATGTACATCACCAAAGTGGCTGTAGTTTA
GTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACATA
TCACTATATTTTTTTTCCCTATTTTTGTCACATAACGATTAACGGCTCTGATTAGCTCTT
ATAGGGACACTGACAGCTAGACCCCACATCTGACTGTTTTTTGTTTTTCCTGTCTTTTTT
ACATGATGCTGAACGATTAACGGCTCTGATTAGCTCTTATGGGGGCACTGACAGACAGAC
CCCACACCGTTTGCACGTCGGCCCCCTCCTCTCATCCCCTCTTCGCCTCCTCCGCCCTCA
CCCCACTCCCTTCCGCCATAGCCGATT