Map Locations of contig_39762 (3970 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_39762

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55215 1 1636 bp AK249845.1 Available Available None





CDS Structure of MLOC_55215






Contig Sequence (3970 bp)

>contig_39762 3970 assembly3_WGSMorex_rbca.fasta
ACTTTTATTACATTGCCACTTATATTGTTTGTCAGCATCAAGCATCAGTGCCAGTAATTC
AAAAAATATATTGAACCCCAGCATGTCCTAAAATTAAGCACAGTTCACAACATCAGTGGT
AGGAATGTATCCATGAACCAACCAATATACACATGAACATCCACTGCAACCGAACCACAA
TTATGATTATGGATGGAGCACGAAAAAAATGTATTCCCAGACATCCCCAACTAAATTATG
CATATAGCTAATGATAAATGAAGTAGTGGCATACCATCATGATTAATGAAGTACTTGCAG
TTAAGCATCCATATGGCAACGAATCCATAAAAGCAGTCCATAAAAGCACAACCAAGTTAA
CACCAATAAATCAAATAACAACCCAAAACTCTCATACACATAGAATGCACAAAAAGTTAT
GAAATTATGCACTCAGGAGCAACCATTTCAGATAACACGAATCAGCACCATTAGTGGGCC
TTTGGACCACCAGCACACAACTTAACATAAAACCACGACTTAAGAAAAACCCCACCATCT
AAAAACCTAGAAATGATATGATCCTAAAAGCACCAAATAATACTACACTCTGGGAGCACA
ACACTCTTCCTCATAGATCAGTATTAACAAACAAACGCAATGACTCCACATCAACTTGTA
AAAAAACGACATCAGCATCACCTCCATACTAGCGACCACAGCATCTGGACGAACCACACG
AGAAGCGCAGCAAGGGGTTCAAATTTGACAAAGACAGCTCGAATTAGAAAACCATATTTC
CTCCAAATGTAACAGATTTCATTCGTAGTTAGCTGCCCAGAAAGGCCCATGAAACCATGT
GCCAAGGATAATGCTACTCATGAATAGTAGTATTCTGCTTGGTTATCCTTGATCACTGCA
TTTTATCGACCAACAGAACTACAGACCACCACAAGGTTCAGAGATGCTGCTGGAGAGCAG
CTAGAGGAAAATCATTCGTCACGCGCGGCTGAATCGCTGAAATAGGATGAGTTGAGCGAG
GTTTCAGAAAAGACAGAAATTAATGGACAACAAATGCCCGTCGGTCACTGGTCTCGCGGT
TGCGGAAGACGCCGCCCTCATCTCATATATTTATTATTATTATTATGCTTTTCACTCTGC
AGATACTCGTCTGGTACTGGATACCGCACGAATTCCTCTGGCCCGGTACTAGAAATCGAA
TCAAAGGAGCATCCGAACCTACGGACCAAGGGAGCATCCAGAGGAGAGGAGAGAGGGGCT
TTTACCGCCGCCGTTGAATTTGATGGCGCTCTGGAGGTGGACGACGCCGGACGCGTCCCC
CTTGCCGACGGCGGCGTCGAGCTGCTCGAGCGCCTTGTTGTAGTTGGCGACGTAGGTGGC
GTGGTGCTTCTGGTGGTGCAGGCGCATGATCTCGCCGGAGACGGCCGGCTCCAGCGCGCC
GTAGTCGTAGGGGAGGTCGGGGAGCGTGAACGTCGCCACGCCCCTCCGCGCGCCGCCGAG
CGCCAGGCCTAGGGTTCTCTTCGTGGCCAACGTGCTGAGCGCCATGGCTGGTTGTGTTTT
CGTCTCTGGTGTGTGTGTGTGTGTGCGCGTGGAGGATTTGGGGAATGGGATGGACGGATC
TGGATGCCGCCGCGATATGGAGCGGTGGGTGGTGGTACAGATCGATGCTGCTAGACCTGG
CCATATGGGCCGGTGGCACGGCCCAGCTATAAAAGGTGTCTGGCACGTCACGGCCCTTGC
GTGAAATAACGGCACAGCGCGCGGGAGTCCGCAGGCCTTGAAGCGCTCGTCTTTATTCTG
TTTTTTTTTACGTTTTTCTTTTTTGTCTAGGAAAACGTTTCCTTTCTTTTTGCTTTATTT
TTTATAAAATATATACTTCCAAATATTCTGAATATATACTAGAAAAAATCACGTACATTA
AACATCTTAAAAAATGTTAATAAGGAATTTGGAAAATGTTAAGATATACAGACAAAATGT
TTCTCAAGTATACGAGAAATGTGTACACACAAATACAATGCGTACACACAAATACAGATC
GATGCTGCTAGACCTGGCCATATGGGCCGGAGGCACGGCCCAACTATAAAAGGGTCTGGC
ACGTCATGGCCCTTCCATGAAATAACGGCACAGCGCGGGGGAGACCGCAGGCCATGAAGC
GCTAGTCTTTATTCTGTTTTTTTAATATTTTTTCTTCTTTTTTTGTCTAAAAAACGTTTT
CCTTTTGCTTTATTTTTTTAGAAAAATATACTTCCAAATATTCTGAATATATACTAGAAA
AATCACTTACATTAAGCATATTAAAAATGTTAATAAAGAATTTGGAAAATGTTAAGGTAT
ATAGACAAAATGTTTCTCAAGTATACCAAAAATGTATACACACAAATACAATGCGTATGA
AAAAGTTGAACATGTATTTTTAAAATTTTCAATCAAATATTTGAAAAATATTAATCAACT
AATTGAAAAATATATCAAGCATATGAAAATGTTCAATGTGTATAGGCAAATGTGCGTCTT
GTATATGAGAAATATATATGGACAAAATACTACCTAAAAAATCTTATAGTGTATATTACA
CGTACATATTTTTTTATTTTGATAGATAATACATACAACATACAAAACGCAAGTGGTGAT
AACTATGACAGGATGGTAGGAAACGATTATCCACAAGATGGGTATGAAAATAGTGTTGAT
CATGTATTTAAAAACAATTTGATGTCAATAAAAGTGCTCCTGGTGCATACAAAAAATGTA
GAACATACTTTAAACAAGTTGCGAAAAAGAGAAGAAAGCCAAGGAAGAAGAAGGAGGAGA
GGGTTACTGGCTCCGACGAGGAAGAGTAGGGCATGAGAGATGGTGGGAGGTCGACTCCCG
TGAGTCGGCTAGTGTTCCATGTCCTACTTTACCTCGCCGGCTACCGGACCGACACGATAA
GGGACGCAACAAGCCGCCGGACAAGGGCACAACGGAGCCGGACGAGCCCTATTTAGTACT
CCCTCACTCCCAAAATAACTGTCTCAAGCTTAGTATAAATTTATACTAGAGCTAGTANNN
NNNNNNNNNNNNNATTTTGGGACGGAGGGAGTATCAGATTTACGTTGCATGTAATAGTAC
CGATTTGAGATTTCTAATTTAAAATATCTAGATATAAAATGCATTATTTAAAATATGATT
GGTTAGTGTCCGTGAACGCGTCCGCAAGCATTTGCAGGAGCTGATTTATAAGGTCTGATT
GATTGATGGCAGCGGCACATGGCTTGTCCCTCTTCAATAGATGTCGTGTGTCTGGGGCGT
CAAAAAACGAAAAAAAATAACAACGTGGGGAATGGTTTTTCGGCGAGATGCTCTTACCTC
ACCTTTGTTTGGGCTACAAATTCCTCAGAATCACTTTGCTATGGATTCCTGCGAATCAGT
TGTGGCTCTTGATTTCTGAGAATCAAAATCTGGTTGTTTGTTTACTTTATTGTGTGTCAG
CTTTAGGAGTTGTGGCTGTTGTGAAATGTCAGTAACGCCCTCGACTGCTGACTATGATGC
TTATATGTAGATTAACTGCATGTTATCCGTTTTGACTTGATAAAGTGTGAATTAGCACAA
AAACACAATATATTTAAAATATGCACTAACCATAGTCTTACATACATACGCATATCATCC
AAAATATTCAACATTCATCAAAGTCTCATCAAGTAATATGTGAAACTATACTTGATCCGT
CATCAATCGCCTCACAAGTTGCTTTCATGGTCGCATCATCACCAACCACAATGTTCGATA
CATGTCTTGTGGGTAGGGGATGTAAATTCTCTGGCATGTAGTTCTCATCATGATCACATT
TGTCAAACTCCAAGTCTTTCAAATTGCTTTCTCTAATGCAATTATGAAGTGCCATGCATG
CAATGATGATCGAGCTTGCTTTTCAGGAGAGTAACTTGGCATAATTTGTAAAATACGCCA
TTTCATCTTC