morexGenes - Barley RNA-seq Database

Contig contig_39739
Source Contig contig_39739
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39739 (7268 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_39739

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55190	1	1564 bp	MLOC_55190.1	Available	Available	LOC_Os01g74490.1, FRAME:+2, EVALUE:3e-31, 13101.m08141 protein heavy metal-associated domain containing protein, expressed
CDS Structure of MLOC_55190

Contig Sequence (7268 bp)

>contig_39739 7268 assembly3_WGSMorex_rbca.fasta
TTGTATATTTACAATACATGTCCATACAGAGGATCCACTAGAGATGCTCTTAGGAAGCAT
CAGATTCAATTTGAGCCCATTGCGGTCGTGGCTCCCTCTACCAAACGTATACATGCCGCG
TGGTGTGTGTTTGGATCAAACAAACATACACACGCGAGAGAAAAAGAGCAAAAGCAGCTT
ACGATCAATTTTACTTTATTTTGAGATGTAGCTCCTATCGAAAAAATATTCCCAAAGGGT
CCATCACAAAACCAATCAGAATTTTTTATCAGATGAAGAAAGATACGAGTGATAGCTTGC
CTTTTGGAAAGATCCTGGGTTTTGCAAGGACGCTTTGCATACCCGTGCCCATTGCTCAGT
TGACTAATCGAATTAGGACTGAATGCACCAAGGATACTCCCAAAGCAGAACTTTCATTGT
GCCTAACATGTTTATAAAATGGAAGGGTCCGCTGAACAACAAATATATTCTTGATCTACA
GTTTAACAAGGTTATATTTTAAAATATGTATAACCGAAATGTTGGTAAAGATATGCCAGT
TTCCACTTTGGATGTATATGATTTAACTCTCTATTTTCATAGTGCAGTTAAAATACTATT
ACAAAAACTATTATCACTCTGTCTAAAACGACAATAGTAAATGATGTTATATTTTAGGAT
GGAGGGAGTAGATTGTCAAGATTAAACACCATGCCACCGTGGGAGGAAGGCACACTTTGA
TAGAGCAAACGCAAAGGGGAAAAGATATAGAAAGAAGAAACATTACAAAAATATATACAA
CATCAATGATAATTTTATCGGTTTTTCGCATGACAACTCTAGGCGTTGGCTCGGAAATTT
TATAGCTGCTTTTGCTCTTTTTCTGCCAACATGACGTCTGTTTTTTAACACTGGAAAGAA
AAGGTTGCATCTGAAAAGGCTACACTACTCCTCAAAAGATGCAGAAATTAAGAAGACAGT
ACACCTGCCTCTGCGCGCCATTGTTTCAGTGGAGCTTCTGTGGACGAGGTTCCATACCCG
CCCCGCCATGATTACACCACAAAGTAAATCAAGTTGCCAGAATTGGCCTAGGTATTGGCG
CAGTAATTGGCTTATATATCCTCCATATTGGACAAGAAGTGGCTAGTTGTGGTGCACAAA
TTAAGGGATCAATTTGACCATTGTGCCAGCCAACTGTGCTTAGCATGTTCTACCTACATA
TATGTAGCGCAACACTAATAATTCACCTTCCTTGGAATTTTTTGGTGTGTTCCTCCTTTA
TAGCCGTCTCCCGCCGCTGCCTAATTTCAGTTACACATACTTCTAGCTCGGCGTTACACG
TCGTTCATGTTTAGTGCGTCTTTTCTTAGCTTCATGGAAGCTTTCCTTTTGGCACATTTT
AATAATTTAGAAAAAAATAGTGCTAGCTCAAACAATGCAAGTTTGATGGAGGCTGATACA
AGTCGCTTTCTTCCGAGATGCGAAAACCCCCAGCTTCTGCATCGAGCGATGCAGGCACCC
ACCTGATACAAGTCACGATTAGTTGTAATAGTAATTGAGTAGTATGAATGAAACACCAAC
TACTACCAAGACTAATGAGTAGTGCAGCAATCTAATCAAATTGCAATGCATGCACTTCAG
CAAACAAAACATTAGACACACCAATCAACAGGAGTGAGTCAGTCAATAAGAGTGATCTGC
ACCAAATCTGTCACATGCACAAGTAAATAAATTTGTGCTACTAATTCTTTGGTGGTTGTG
TAAATGTCAACAAAATTAAAAGGTGGACGGTGACATGTGTACGAAGGAAGTTGGCCTTGC
TCTTCCTCCTCTCAGGTCCTTTTCTCCTTCCGTCGGCTAGAGTTGGAAATTAAATACGTA
TGTGAGAAAGAAATAAAGGAAGGGATTGAGGAAGGAAGAGTGGCGTCTGTTGTGTGTACC
AAATGTCTCGAATCTATTCGGGTCACTTTCGTCGTATTCTTCTTCTCACTGACCGACTTA
TACCATAAGTACGGTGGATGGCGACGAGCAGTAATCCGACCAAGCTGTAGAGATCGACGT
GTGTGTCTTTTCATCTGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GCAGTGTGCTGGTTGTGTTTGAATCGCTGGATAGGGTCGTTGGGACCTGAGGGAATCAAA
TGACGTTATTTTCTGAAATTCCCAGGCCAGTGAGGGATGGCGCTCCCTAATTTCATCCTA
CACTGGAATATACACTCCGTGCGAACGAACGGACGTATCTGAACATGAACATTGGATGCC
ATACATATACATGTATGTTTATTACCGGTGAGAGAACAAGCTGTGCAGCACATAGTATTA
ACACTCAGAGGTAGCTCCATGATCTGTCACAGCTGACAGATTTTTCAAATCAATTCAGGT
CTCTGCTGCTGCGTTAGTAAATCTCTCTCTCTCTCTATGTGCGAGCTCGCATCGCATGCA
TGTGCAGATTTGGCACCATCAATCAAACTACTAGTACAGATAGCTCCAGAGCCTGTTCGT
CGCATTAGCCAGTAAAATTTAGGCGGAGAGTAGAGAAGTACTACAGATTAACCCTGCTGC
TGTTGCTGATGGTACGATCGATCGGTGGATGAATCTAGCCAACTAACTAACGGGCTGATT
CCAGACAGGACATGCAGTATGATGAAGTCAGTGAGCATGCAGATGCTCTTGTCCGGTTAG
GTAGCAGGTGAAGCCAGTGAATCACACTCACTACTGCCAGTGATCAGTAGCACAGTTGCT
GACTGGCTCACACTCACTACATTCCGAAACCGTCCAGCTGGATCAGAGCATGGACGCTTA
TGATTATGCGGCAGCTGCACGCACACGTGGACCACACGTCGTGCCACGTACGTTCCCCAC
GTCAACACAAGCAGAGCTGTACACTCCTTCAACACAAGACGGTTTTGGCTTTTGCTTTGC
CTCCTTCCTTCCTTCCAAAGTCCCAAGTTTAAAACCTCCTTTCTCGCCCACAGCCAGAAG
ATTAAGAGAATCATCCTTGTGCTTGTGAACCAACCCAACCCAACCCAACCCAACCCAACC
ATCTTGCTCCGTTCCGTTCCATGGCGTCTCTGCTTCTCAAGGGCGTGCACAAGCGGCTGG
GCCTGCCCTCCATCTCCATCTCCTGCTCCTCCGCAGACGCCACCAACATCATCGCCTCCA
CAGGCACCGTCGCCGGCGTCGGCAGCAGCAGCGGCCGGGCCATCGACCGCCACTCTCCGC
GCCTCCGCGACCCGCACCGATCCTCCACCTCCAAGCCGCCCAGGCCAAGCACCAGTAGCA
TCACCACCAAAGGCTCGGCGTCGTTAGAGGACACCAAGATGCAGCAGAACGGCCATGGCA
GCAAGAAGAAGAAGAAGAAGAAGAGCACCACCGCTGCTGCTGCTGGGATTACTGGCGCCA
GTAGCAGACCTTCGGCGAAGAGGCTGGTCAGCCCGGCCACGTCGTCCAGGTTCCTCCTCA
ACTCCTCCCGCCTGCTGTCCGACGACCTCGACGTCCTCGCGCTGCCCCCTCCCCCGCCGC
CGTCCTTCATCGACGTGCTCCCCGGAGGCGAAGGGAAGACACCGTCCTTCGTCGACGCGT
TCCCCGCTGACCTCTCCCTGCCGGCTCCCTTTGCCAAGGAGGCACCGCCGTCGACCGTGC
ACCAAGCAGAGTCCTCGTCGTCGTCAGGGACGTCCTCTGCTTCGTCGTCGTCGGAGATCT
CCGCCGTCCAAGAAGAGGAGCAGCAGGAGAAGGCGGCGGTGCTGGCGCGGTCGTCCTCCT
CCACGACCACGGAAAGAAGAAGGACGACGCAGGTGGTGGTGGTGCTGCGCGTGTCGCTGC
ACTGCAAGGGGTGCGCGGGCAAGGTGAAGAAGCACATCGCCAAGATGGAGGGCGTGACCT
CGTTCGACATCGACATCGCGAGCAAGAAGGTGACGGTGGTCGGCGACGTGACGCCGCTGG
GCGTGCTCACAAGCGTCTCCAAGGTCAAGCCCGCCCAGTTCTGGCCGTCGCAGCCGTGCC
CCCCGCGCGCATCCGCCTCATTCTGAACGCGCCAACCAGCGATCGATATCCGCTTTCTCT
GAACCACAAGTAGATTGATACGGCGTCCTAGCTAAGCTGGTCGAGTGGTCGTCCATGGCG
GATCACTCGCTCCCCGGCGATGGAAGTAGGTGGTAGAACCTCGATCGACGGCTGCCACGC
ACGCACGTAGTAGCTCCATATTTCTTTTCATTGAACTTGGAAGAAACGGCATTGAAGCTC
CTCGTCTTGGCATGCATGCATGTGCACATGGATTGATTTTCTATGCCTGTATTCCAGTTC
CAAAAGATAAAAATAAAAAAAATTCTATGATTGTATTCTGTATTGAGATACAATACTACA
GTTCGTCTACCCAAAAAAAAATACTACAGTTCTTGTACTTTTTTTTTTTTACTTTGTTCT
GCTTTCTTGTCTGAATTTCGAAATATACTGCATATGAGAACTGCTACTGGACGATGCACT
CAGTCACGCGTAGCCAAAATATCGAGAGAAAACAAAAGGGACTTTAAAGGTGAGTGGGGA
ACAAAGTGTGTAATCGAACATATCATTGTTTAGTGCAGAGCCGTGTTATGCTCTGATTCT
GTTCCGGTGGATTGAGACCGATCGATCGACCACCACGGGTATCACATTTTTGGTTCTGGA
TTGTAGTCATAACATCGGAAAAGTTTACCATCATCCTACGGATGGCAGCGTCCGCGTCCG
TCACGTTCGGTACATGACAAGTGTTTAGGCCTGAATACCGTCTTTCATGGAAGGCGCTCC
TGCAACAGGGAAAATATAGTCTTGAAATGGTCTACACGGGTCTATGTTTTACAACACAGT
CTTTGCTGAATTTTTTTTATAACAAAACCTCAGTTAAACAAAGCTTACAACAAAACCTTG
ATTACAAAAAAAAATGCAACAAGAAAAAACAGTTGCAAAAAATTATGAAACAAGGCATAC
GTTATAGAAGTAATTCTGAAACAAAACATGTGTTGTACTGATGAAGATGCACTCAGCTCG
TTTCGATGCGTCAAATCCGACGCGGCCCGGAGATCAGTCTGCGGATGCATAGCACGCTCC
TTATAAACCCTCTTTCTCTCTTTTTTTTGTCGGTAAAGAAATCAGTATCCTTTTTCTCGT
CACTAGCAAATACACCTAATCTCTGCAGAAAAAGCAAAGACACATCATCATTAGCCAGTG
AAACGCGAAATTCTTCTTCCAAGTTGACGACGCAGGTAGCTACCAGTAAACAAATCAGGA
ACTCGTGGAATTTCATGGCCGCCAGACTCTTAATTCAACGTCAACTTTGCATATATTACT
GTGATATATAGGGGGGAAAAGCAACTTATTTCCCTATCAGAGATATCCACAGGGAATTCA
TTCGTTCTTGGTAATTCATTCTAGTTGGTTTGGGTGGAGGTGTCATGATTGATACGATAA
GATCGATCCATCGACCAGGAAAATCAAAACAAGGTAAGGTAGGCCCGAAACCAAATTATA
TACTATACTCCTTTGGATCCTACACTGAGAGGGCAAATTATATACTATACTCCTTTGGAT
CCTACACTGAGAGGGGCTCTACACGACTGACTTGCTGTCAAAGTAGAGAAAACAAGAACA
CTCATCTCTCAGAAAGCTCCATCCATGAGTAGCTTCCGCACGGTTTCCTACCTAGAAACA
AACATAGCAAAAGCCAAAAGACACGACTTGATTAACAACTTACTCTTCAAATGTGTATTG
GCTAACCTCGGGCCTGACTAGCTTCTTGATTACTTGTTCCAAAGAGTGCATCTGCAGCGA
TCAGCACAGCGTTTCTACCATTCGCCATGGCTGACCACTTGCATTGCATTTGTTCGACCC
ATTTCGCTGTATTGGATACTTTATGTGCATAATAATACTATAATGAAAAGGACATTGAAA
ATACTTATAATTTTCAGAGTTTATTTTCACAAATGTTCGTCCCATTTTCGTTCATCATCT
TCATAAGTACTTTTTTGGCAGGGAACAAAAATATCTAATTACAAGACTGTTTTTTTATCA
CGGGGAGCAAAAGTATATAATTGCAAGAGAAAGAGTCGAAGTTGTTTTAGGTGGATGGTT
CAGGAAAATGAAGCCAAGGTTTGGATAGAAGCTTTCATGATTAATTGATACGATAAGATG
GATGGATCAGGAAAATCATGCCAAGGTAGGTAGATCCATGGCCAAAATATATATTAGTAC
CACTTGCACACTGGTCTACTTTAGTTTGCTCTAAACTACGTACACTGACACCACGTAGAC
AGATCCACCGATCGATCAGCAGCACGAAGTAGCTTCGCATGGTTCCCGACCCTTTCTCTT
TGCTACAAGAAAATTGACAGAGCAAAAGACACCACTAATTAAAAACTGGTTAACTGGAGT
ACACTGCTACCTAACCGCCGGCCTAAGCATAGGCTGTCTTGTTAATTGTGTTATTAGTTA
ACCGGTGGGTCAGCCTGAGCATGCCCACCAGTGCTGCATTTCATATGATGCAAAATGTAT
GATTTGGACTCTTCCTTTTCCAAGTTGTGCCTAGACCTTTGCCCCCCTTTTCTTCTTAAG
TTGAAATCTTTCATATTGAAGAAGAAGGGCAGCAGCGCGCAGAGCTCCAAGACAGAGATG
AACAACACAAATATTTGGTGAGGATCCCTTTTTCCATCCAACAACTCAGGGAAAACGGCT
GACGCTTACATTTCGATGGTTGTCGATGGTTGAGTCGGAGTCGTCCTTGTATAGGGGTGA
TGACAATGGCACAAGGGTTGCAGCCTCTATGATGTTCTTTCCTCGACGACGTGTGTGCGT
TCTTGTGTGGGTTGCTAGGGCGCTGTGTGTCCTGTGTGGACGTGTTGTAACTGTTTTCGC
CCGGTTTTTTGTTAATCAACCGGGAAACTCTCTTCTTCTTAATTAATGAGATGAGGCAAA
GCTTTTGCATCCGTTTCAAAAAAGAAAGATAGCTACGAGCTTTAGATACTTTGGCATCGT
CGTGTAACTACGGTAGAACCATTCATCCTGCTTCAGGGAAAACTCTAGGATCTGTTCTTC
TAGATAGGATGATAACGGTACTGCGGTGTTGTTTTCTCTTTTGGGAGCATCGTTTGTGGA
GCAGAGCTAGAAAACAGAGGCAGGAGATGGAGCGGCTTTGTCTTGCGCGGAGCTTTCAGT
GGAGATGTCAAGTCATGCCNNGCCGACAGGTGCTACGCTGTGTCATGTCTGGTCGGCAGG
TGCTACGC