morexGenes - Barley RNA-seq Database

Contig contig_39734
Source Contig contig_39734
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39734 (7578 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39734

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55184	1	238 bp	MLOC_55184.1	Available	Available	None
MLOC_55185	5	3300 bp	AK373156	Available	Available	None
CDS Structure of MLOC_55184

CDS Structure of MLOC_55185

Contig Sequence (7578 bp)

>contig_39734 7578 assembly3_WGSMorex_rbca.fasta
ATATTTAGGTACGGAGGGAGTACAACGCTAAGGTTTTCACTCTCCAACCCCAACAAACTG
ACAGAAAGTAATACTGTACTAAATTTTACCCAAACTCAGAGAGAACCAGGGGAGCTGAAA
TACTTGTATACATTAAAAAAAATGGCTTCTTGCGTATATACAACTAGGAGTGTGGTGAAA
ATGGTAAATCTTGTATCAGCTAATAATCATGCTAATCAAACTATAGCAAAAAGAACAAGC
GAGAAAACACCGACCAATTATACAATACTCCCTCTGTTCGTTATTGTAAGACGTTTTGGA
TATTCCAGGAAGGACTACATACGGATTGAAATGAGTTAACAAACACACTGAAACACGTCT
ATATACATCCGTTTCAGAAAAAGTTTACAACATCTTATAATAGTGAACGGAGGGATATAA
CATAATCAACGCAAACATAGGCCACCAGAAATTCAGCTACGGGAGAATATGGCATTCAAG
GGCACAACCAAAATTTGACTCTCCACCGAAGTCTAGAGACATTGTTCATCTACAGATGTT
CACTAATGCCAAGGAAAAAAAGGCTTACTGATCTATCAGCTATTCAAGTTTCAGTGTATT
CAAAGCCATGTTGCTGATACAGCTTATTATACATTTCTCTACCCAAGATTTGTTTAGCTA
GACTCAGTTATACTAAATTTACTGTCACCAAACAAATTTCAGAGGGGAAAATGAATTTAC
CGTCACCAAACAAATTTCTGGGGGAAAATGAATAATAATGCTAGTAGGCCGTAGGACATG
AATTCATATTTAGTAATGCAGAATTTCCTTTGTTGTACTTCAAACAGTAATTATCAGTTG
TCTAGCAGATATGGCAACTGACCTTTTTAGATCTTCAGTCAAGCTGCATTTATCATTATC
CGTTTTTTCATGAACATTTGCCAACCCAGATGTATTTATATTATATTCAAAAACTTAATG
AAGTGTAAATCTATGAGAGAAGATGATACGGAATGCAAACATATGGTCCATGGATTTTTT
TTCTTATCACAACAGAAATTTCAGTACAGAGAACTCATTATACCTGGAGATTTCACTTCG
GTAACCAGATCACGCTCACTCAGATCCTAATTTTCACTCAAAACGGTTGCAACTGGACCA
TCTACCAACACCCAATAACAAGAACCACCAACGGGGGACGAGTATTCAAGTTTTTCACTG
AGCACAGGAAGGAGGAAGTATTTCATTATGCTACCCGCTTAACATGACAAACTACTCATC
TATGAGAAGGCAAGGAAGCTGGGCCTGGAGAAAACATCCAGGAGGCAGCGATCCATGAAA
CCATGATGGGAGGCCGTTAGGTAGGCAATAGTCGAGCAAAGGGTTGTACATAGACTCATA
GAGAATGCTCTTGAAATTTGGCACTTGAGAAATGGTAATAATAAGTAAAGCGATACATAT
TCGTAAAAGAACAGTTCAGATACCTCAACTTGCATGTGGAAGATAAGCTTACCTGCTCGA
CCGGTACATCACAATATCATATCTAACTGAATAATCGTCTTATGTACTGTCTCCATCGTG
TCCACCACAAATGCCTTACAACTTCCGCTCCCTCGTGTCCACCACCAATGCCTGTTATAC
AAGCATAACGACTCAAACAGCATAGGACATTACAAAGAAAATGCCAAATAGATATGAGGA
GGCATAAACAAACACTTAGATAAACTTGCAACTGTAATTCGAAAAGATGAAATTAACTCA
ATTAATAGATTTGTTATGGTATATACGAACACTGACAATAGGGATCTACTACAAACGATA
AATGAACAATTATTTTGTAAATTTCAAACCAAGTAACTATTGTGGATTTAAGATTTTAGC
AAGCTCAGCAGAGATAATAATACTCAAATAAAGAAATACAACTCGCTTTTAAGCTTCCAA
GTGCAAGGCTACCTATTTGACATTGTAGTTTGTTCAAGCTAATTATTCTTATAGTTGTTT
TCAACTTCAAACTGCTATTATCTCATCTTGAAAACAAAAACTGCGCTGCCGCTATGCGCT
AACACTGCCATTATACAACTCTTGCAAATTTCAATAGGCCTATTCTGCAAAGAACTAGCC
AATATCGGTGTTGATTGTTTTAGTGCACAGAATTCTTTATATAACTTATGTATCCTAGAT
AGTTGATCTGTGCTTGATCCATGTCATACAAAAGATTATCTGTCTGATTATTTGACAACT
GCATTGCCACCACCACCAGATAATTCCCTCTCAAGGTATGCCTATAATTAACTTCATATA
GTTTTTATGTTTCTTTCCATAGCTCTGACTGAAGCAGATAGTCAAAGTTCAATCACAAAA
TAACAATATTAGTAACAACATTGTGTAGGTACGGAAGAGATATGTTGAAAAGGTCATCAA
GCGGCAAAAGAAACAAGTGATACTACACTACTCAAAGTTGTTAGCTTAACACAGGATGAG
AACAACATTTAATCTGCCACTTAACAAAAAATAACTCTGTTTTGTTATAGCATCAGTGAA
AAGGCATGCTAGTACCTGGAGTATAGACGGTTTCGAATGGATAGTAACGATAAGCGATGC
CGGTCACAGAAAGTTTCTTGAGCTGCAATGACTCCAGGTGGACCATGAAGACACCAACAA
TTGTCCAGAAGAACACCACATTATTTTCCTCCGCGTAACCTAACATATTCGGTGGCTCTT
TCTCTGAACTTAGGAGAAATAACTTGTCCAGTTCAATAGTTCTTCCAGGGATCCATGAAA
CAACGTCATGCCAGTCTGTCTCCCTCTTCCATAATTGGGCGATGAAGCCTGAAACGACGA
GGAGACCCATCCCACCACCCTCTGCCCGCATAACCGCGACATTGCGATTGCGGCTGGCGA
GCACCTGCCCTGGCAACAATGTCACAGCTAGGCTCTCCCTATCCAAATCAAACTCAAGGA
TATTCGATGCTGAAATCAACCAATAAATGCAATCCCCGGCCAGCACAGCGGGGTTGCCTA
TATGAACCATAGTCCCCAATGGAAGCGGGCATGAGATGGAATCGCCCCATACGCCGGTCT
CCGACGAGTAAACGCAGGCGAGCGCCCTTCTAGGTTGCTTCCCGTCGCTGCTTACCAGGA
CCACCTGGAAGTGGTCGATTTCTCCGGCGGCGCGAAGCACCGTCCCGTCGATCGGGTTCT
CCAACGGGTGGAACCCGAACCCCGGGGGCACGGCCAGGCGGTGCTGGACGCCGGCGACGG
GGTCCCAGACGACGACCTGGAGCGAGATCGGGAGGAAGAAGAGCGCGAGGCCGTGGCGCC
ATCCGAGGGTCATGTAGCGGTCGTCGAGCTTGAGGGAGAAGTGGCCGCGGGGGAGGCGGT
CGGGGGCGTCCAGGGCTGGCTGGAAGGTGATGCCCTGGTTGGCATCGATGAAGCCGAGGA
GCGGAGGGCTGCGGTGGTGGTGGATGCGGAAGCGGCGGCGGAAGGCGGGGTCGGAGAGTA
GGCTGCGCCAGCGCCTGCAGACGAGGGAGGCGCGCGGGAGGGAGGAAGGCTGCGGGGGGA
GGCGGAGGAGGATCTCGGAGAGCAGGTCGTCGTCGTCCAGCGGCGGCGCCGCCGCGGAGC
GGGGGAGGAAGCTGGTCGTCGTCATCTCGCTCACAGGTCGGGCAGTCAGTCAAGCCCAGG
TCCAAAGTGACGCCGAAGAGGCCGACCAAGACCACATTTCCGCTGCTGGGCAGAGCCCAT
GAGACAACTGCTGGTGAGAGCCCATAAGGCCATGAATAGACAGACAAACGTCAAAGCCCA
CGCTACTTTTTCTCCAACGCCTGCAAAACCTTCAGCACAACATATTTTTCCAATCACATA
TAAATAAATAATATGAAAATCTAATCTACACACGCCGCATCGCCGCTTTCTGATACGGCA
GCTCACACCACGTGGGACAGAGTACGAGAAAGCAGCAAAAAGAAACCGAACCTGCGACCA
AACCCCTCTCTCTTCGTCATGCATGCATGCAATGATGTCACGAGATTCGCTCTAAATGAT
TGAAATTCAAAAAGGTTTATCTTTGAAACCATTAATTCGATCGATGATTCATTTTAGTCG
TTGACTTTGTTTCGATGAAATCTTTAAAACTAGATCCCATGTCAACATGTTTAGGTATTT
TTTTCCTCGTACTTACCACATTTGTTGTACTTACTTGTCATATTAGTAATTATTTACTTG
TTTGATAAAAAATAACTCAATCGCCATATTTTTTAGAAATTACGTATAAATATGACATCT
TGACATAATCGAAGAGGCAAGCACAAACAACTTTTTTAGGACGATAACGTCCAAAAATAT
GACAACTCAGCATATTTCAAACAAACGACCACAAGAAATCTTTTTTGTTTTTGGTCATTG
TTAGTAAATATGACAAGTCGGCATTGTTAAACTAACAAGCACACAAAATATTTTTTTGAC
AAAGTTGTATGTAAATATGACAAGTGGACATATTTAAATTGGCAAACCAAACCTATAACA
TGCGTTAATATAATAAAAATTGTTACAAAGCAACAATCATTTGTCAAACATGCCAAAAAT
TTATACACACGGTTGTCAAGTTGATAACTAAGTTAATTAAATGTGGTTACTAAGTGTCTC
ATAATCTAACAACTAAATAATAGTATTTTGGCAACTATCAACGAAAAAATTGTCAAAACA
TGTCGACATCTTTGAAGACCTCATTGCAAAAAGCTAACGGTGAAAACGAATCGTCAATTA
AATTTATAGTTTAAGAGATAAACCTTTTAAAAAAAATCATAATTAAAAAATCTTTGCTGA
TGCCACGCTGGTGTATTTGTTTGCGTGTATGAAGGAAAGCCGCCGCACGGCGCTCGTGGG
ACGCCGCTGTGTAGTGACGTCCATAGATTAATAATAATCAATCTGTGGTCTTTTCTAATA
AAATATATAAATAATGTTGTACAAGACGTGTATATGGTATCAATTGGCTATTTTCTTTTA
CTGGAATAAATATGACTTTATTAATTGTATAATAGCAGTGTCTTCGTGCTTCCATAACAC
CAACCTCCCTCCGCCGAGGTTTATCCTCAATCATCATACTCTCGGCCTCGCACCTTTAGA
AGCACCATAGATTTAGGCCACTACTGATCTGGATGAGCATCCGTCCGGGCATCACCTTCG
CACCTTAAAGTATACATGTTGTGTGATGTAACCAAAACTGTACTTTTTTCTACCCTTTTA
TCAATGAAATTATACACAAGCTTTACGTATTCTTAGAAAAAAGTGTGCATGCATGATCTA
GCTAGTAGTAAAGTTGTCTTATAACATTGTTGAAATATTGCAAGAAAAAAAATCATTTAC
AATTCATTCACGGAAAATTACATTGATGTTTTTAGTTGAAAAATTAGAAACTTTGCTGCC
CTTGTCTATATATGCAAATTTAGTATTACTGAGTTAGTAGTTGTAAACCTGAATTCAATG
TACATCTAAGGGTCCTCTATATCTGTATATACTATAACACTAATCTTCCTAAAATTAGAG
AGTCCATATTCAACTGAGGTCTCCAATTGACATTGTAACACCCGATTTTGACCTGGTCAA
TAATTTTTCAAAGCTCTTTCATTTAATTATTTTATTTATACCTCTATAACACTATACTTC
TTAGTTTCAAAGAGTTACATTCAATTGAGGTCTTCAAAACTTCAACTAAAATTGGTTCAC
CTGATTTTGACCGGGTTAATAATTTTTTAAAACTCTCCCGTTCAATTGTTTAGGCAAATG
CACTATGCTTCCTAATGGGTTTGATTTACGATTTAGATCAAACCAACAGTTTTTCAAATC
AATTGACAACAACTGACCTATAAAATATATCAATCATGCCATTGGCGTATATTTTTTCAC
ATATATAAAGTTGGTTAGCGTATAGTATAGGATTACACCACAAAAGGCCCATCAAATTAC
CGAATTAAAAAAACACTATGTTGAATTCCCCACACATCAAACGAAATATTTCATTAGTTT
CAGAATATAAAGGGTATTAGTCTTTTGGAATTTCAAATTCTTCAACTTTGACAAAGTTGA
GAGCAAAAATATCAACATCAACAATATTAAACAAAAAAAATTATGAAAATTCATTTAATG
ATGAATCTAATCCCAACAATTTGATATTATGGATTTTGATATATTTATCTACAAATTTAA
TCAAATTTAAAAGGTTTGACATTTTTAAAAAGTAATATACATTGTATTTTGAAACAGGGT
GATTAGTTTTTTTTAATCCAATCCTTCTAGTTTATGTTATGCTCCCTAGTTTTATGACTT
CATAGTCAATTGAGGTCTTTAATTTAGAATTGTGTCGATTTTGATTGGCTCACCAAATTT
CTCAAGGAGCTGTGTCTCATTCAATCCTTGTAAATCGATTGACGTATTCAATTTTAGATT
TGATTCGTGATTTTGACCGAATCAATGATTTTTTTAATCAGTCGGTAGCAACATATTTAT
AAAGAATATATCAATCCCACGCACCCTCTCGCCACCAACAAAAATGAAGGACCAACATGT
AAGGCCGTAACAGTAATATATACATGCACCCACCAGTGTAGAAAAAAAATTCCACATAAA
TATGGGTTGATTACAAGATAACACAAAATCACATCGTAAATGGCACACCAAAACAACACA
TTACATAAATAAAAAGAAAACCCAATCAATCATCTGCTAAGTGACCACTCCTCGTCAATC
TTGGCGAACTTGCTATCAAGGCGCAACGCCGCCTGAAAGCCGTCTCAACGGTGGTGGCGC
AGTGGTCGACCGCCCACGCGGCAGCGAGCTCCGGGTCGTTGTGGCTCCATTCCGGTGACA
CATCACTCACATTGAATGCCAAGCGGTGAGCAACATTGTGTCGCTTGTAACACGCCTGCT
GCCTCACCGCACGCTCCTCCTAGGATACGACGACCCTCGAGCTCGAGGCACCTCCGTAAC
CGCATCCTCTGAGGTAGTGGAGGATGCGGCCATGCGCTTTCGTGATCGCGGGCGGCGGTG
GTGGCATGGCAGTGACGAGGGTGTCAATGCGGGCGTATCTTGATGTGCGGTAGGAGGCGA
CACTAGCTCATCGTTGAGGCGACCGAGGCACTGGGATGGCACATGCTCCTCCTCCACGTG
GCCTTCAATGTGGAGGTCGCGGTTGCAAGGCAGGGACGTGGGTTCATCCTTCACCCACCA
GAGTGGGCATGCCAGCTCCCGCTTCACGCCGATGTGTGTCGGGGACGATGGCTCCTCCTT
CACCCGCACTTATGATGGTGGCTTCAGGTCCATCTAACGGATGAAGAAATGGCCTACACG
AGGAGACAAGTCACCGCTGCGGCTACTGTTGGGGAACGTCGCATGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGGGGATGTGTGATCTA
CGTATCATTGTAGACCGTACAGCAGAAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCAGTCCCACGATCTTGTGTC
GAACGGACGGCACCTCCG