morexGenes - Barley RNA-seq Database

Contig contig_39707
Source Contig contig_39707
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39707 (7180 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_39707

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55157	1	2279 bp	MLOC_55157.1	Available	Available	LOC_Os04g42100.1, FRAME:-3, EVALUE:2e-147, 13104.m04145 protein retrotransposon protein, putative, unclassified, expressed
CDS Structure of MLOC_55157

Contig Sequence (7180 bp)

>contig_39707 7180 assembly3_WGSMorex_rbca.fasta
CCATGGGAATTGTCATCAATTACCAAANNNNNNTATGGAGAGATATGCTCTAACAGGTGT
CGAGTGGGAAAAGTCTTGAGGACAACACCCCACATAGGGAAGCGAGACGAGAACACCATT
GTTACTAAACATTATGATACGATGCATCCCTCAACCGGGGAAATGCAGTGCAACACGAGG
GAAATGTGTCGCCGATGTTGCCGGTTTCTCGGGCTTTGCCCGACGGCATCATCCAACGAT
GTTTAGGGGAGGAAGGGAGGTAGGAGGGCTCGGGTGGCGCTGACTAGCTTCTTTTCGTCC
CATATTCTGACACCAATATTGGAGTTGGATAACGTTTTCCTTTCGTGACGAATTGTTTTC
ATCTTTTCAAACTTTTTAGTTCTCATTATTATGGACATCTTTGTTCTTGTTATGATAGCA
ATGAAAAAAATAGGGTAATTCCATTCTATTTGAACCAATCTGTGGTTGGATGGTTAGAGT
GACAATGGTATCCCAGCTCATCACGGTTCAAATCTCGATGCTCGCATTACTTTTGGATTT
GCTTGAAGATTTTTTATAATGCGCATTTAGTGGGAGGAGACGTTCTCGTCGACAACGAGA
CGCCTACGGTGATTTCATAAATTACAAGATGATATACCGAGTCAGTCTTTTGAAGATGCT
CACGGGGTTGAGTGTGCGCATACCTGAGCATTCTTCGAGTCGGGCCGGGCTTCAAGCCAA
GCCTAACCAAGTCTGAAGCAGAAAAGTCGGACCCGATCCCGGCCCGACTCGGGCATCGGG
CCTAGAAATTAGGTCCAAGACCCACCCAGCGACATAAAAGCCCATCGGGCCTCGGGCCTC
TTTATTTAATCATGAATATGAGGGAGAAGTTCACGCTTGATCTTCAACCCAAGGCAATGG
AAGGGAGCTAAAGCCTTCTTCCTTTTTCAAATTCGTTTATGGAGCAAAAAGAGGTCGTGC
CATACCATTTATTTCACACAACCCGACCTTCAGGCTTAAAACCAAGGCACATGCCCAACC
CACGGGCACCACCGACCGGGTCGGGCCGGTTGATACCTCGTGGCCAAGTATAGATGTGCG
TGTGTATGTTTATAAAAGTGAGTATATGCTATATATATATATATATATATATGAGTGTTT
GCATCTATACTGTGTTAAAGAAAATTGAAATCGAATAAGTTACATCTTGCGCTTATATAG
CAGTCCATTTTCTTGTTTAGCCAATGGTGGCAGTCCAGCTGCACCAACCTTTCCAAAACG
AAGGTAGGCAAGGCCCATTCGATCTAGGCCGCCGCTGCTGGATCCTTCTTCCCTCCTCTC
TACTCTTTCTTTCTAGCCGTCCCCGCCCATCTCTGCTGGCGGCCCACGTAGCTGCATCCT
GCTGTGTAGCACTACTACTTACTCAAGCACAGAGCCCAAACTGGGCTCAATTATGTAGTC
TGACCATGCTGGAAGGGGCCCATCGGCGACATATGAGGCAGGCAGGACACGTCCCGTCGA
CGGCTTTCAAAGCTCGGAGCGTGGCCTGTCAGTCCGTGGGTACTGTTCGCACGCCCATGT
GCACTCCGTCAGTGCCTCTCCAGTTCGTCGTACGAACACTGGCCGCCATTACTGCCAAAC
GACGAGTTTCTGCATGGAGTTTGATAGTAACAAAATCATGTCCCAAAACGAAGTATTACT
AGTTCATTGTGTTCGATTTGGTTGGTATTTGGTTGCAGATAAAACGCAGCCTAAGCAAAG
AAAGCCTGGTCATCAGCTACAACAACAAGAACAAACGAATCAACCTCATCCTCAGCTCAG
CTCGCTACTTAACAACAGCAGTACATTCGACGACCTCCCCCTATGGCCCTATGTATCCCG
TGTTACGTTACATGCCCATGCACATGCCCATGGGCGATCGGTTCAGCCGTTGACGCTGGA
GCAGAGCCGCCGGACCTCGCCGTCGGAGCCGGTCTTGACGCCGAGGGTGGTGAGCCTGGC
GAAGGAGCCGGCCCAGCTGCCGAAGAAGCTGTCCTGGCTCTGCGCGAACGCCGCCACCCT
GGCCCGTGTCGTCGCGTTCTGCACCAGCACCGCGTCCGTGCGCAGTAGCCCGCGCCCGTC
CAGCAGGTTGCTGAAGTAGCGGTTGTCGAACGCCTCCGCCGACCCGTCGTCGCAGCCCAC
CGCCGCGCTCCCCGACGCCGCGCACGCGCGCATCAGCTCCGTCGCGTACTCGGCGTTCAT
CGTGCTGTCCACCGGCACCATGCTCCCGTTCGCGTCCGCCCGGAACCGCTCCCGGAACGT
GCCGCAGTGCGCCGACCCGATCGTGTGCCCGCCTGCGACACCCGCCGTCTGTCAGATCGA
TGAATGAAGCTGCCGATGCATAGGCAAGTGATGTTTGCTGGGGAGAGCTTGTATTTGTAT
GTATACCTGAGAGGGTGACGAGGTCGTCCAGGGAGAGCCCCTTGGAGGCGAAGCTCGCCG
CCATCGCGTCGACGGAGAAGCCGGTGTCGATGATGTTTGCTCTCACGTTGGACGCCAGGG
ACACGAGGCTGTCGCGTCGGCCGAGGGAGACGGGCACCGACGGCCCTCCGGTCTGGTTTG
GAACAACACAAAATTGAGCATCAGTTCAGTTGGTTTGCCTGTTTGTTTGTCAGCTAAGTT
GCTCCTCCTCAGGAAAAAAAAATCAAGCCGGGCTACTGTTTTAGCCAAGAGCCAAGATTA
GATTAGTCTTTGCAAAAGCAAGAGAAGGAAACATGCTACTAATTAGTACAAGTTGCTCAT
GCGTCAAAGTGAAGCTATAGGTGAATGGTTGATGCCAGCAACTGCAGAGTAAATTTTGAG
AGTACATATGTTCTGAAGTTTCAGAATTCCATTTATGTCCATTTCCATTTTGCCATGATC
ACCGTTAATCGGGACCATCTATCATGTGCTATGCTGATCAAGTGACCATGCACATGCAGA
AATGGTTATTTACTACACCCTCCGTTCCTAAATATAAGTCTTTTAAAAGATTTCACTAAA
AGTCTACATACTGAGCAAAATGAATGAATCAATACTCTAAAATATGTCGTCAATACTCTA
AAATATGTCTATATACATCCTGTATGTAATTTATTAGTGAAACCTCTAGAAAGACTTNNN
NNTAGGAACGGAGGGAGTAGTATATACGAAAGTGAGGCTATAGGTGAATGTAGATGTTAC
TGCCAACTCTCTTGGCCTGATATTAGCAGATGCAGTCATCCAGAGTAAATTTTCAGAGCA
CAAACTGTTGTGAAGTTTCACCCTTAACTGAGACCATCAACCATGTTCCATACTGATCAT
GCACACATAAACGGTCAGGTCCCAGTCATAAGCTGGGATTATGTTCACTAAGCTGTCCAG
GGTCTCGGTATGTAGAGTATTCATTAGGCAGACCAGCTAATCCTATGTTTCAACCAGCCA
TTGCAACGTACGGGACCAGGACCACTCGATCCACCGTACGCTACACGATCTAATCCGTGC
GGCATTCAGTGCGGAGTTTATGATGTCCTATGCTCGCCACCAAGTACTACTGCTCAGAGG
GGCCATATGCCAAACCAAACAGGAAAATCATGCTTTGTGAGAATTGTAGCAAGGGAAAGC
TTATGCTGCAGCAAAGAGCAAAGTTAACGGGTGCAATGGGGTTTGGGTGGGGTTGCAATG
CTACTTACAAATGTGACGGCGTCTCTTGCAGCAAGAACTATGATGTCGCTGCAGGAAACG
GTTGCCGGGCACACGGCTTCGAGCAGCCTCTTGGCCTCGTCGATGACGTTGAACCCGCCC
AGCGAGAGGTTCGCCGGGTCGGTCCTCTCCGTGCCGTTGCCTTGGATCAGCACCGAAGCG
TCGCATCCCTGAGATGAAAAGGGTTAGGGAAGTTGAAACTCGTGGTGCATATGTCATGTA
AGCTTTCAGAAACATGTCTGTAAAATGCTGGCCGTTGCACATATGCAAGATGCCAAAGAC
TGGTGATGTATTGGCGACCATTAGACACGTATGATAGCTCATGTTTTGGGTCTGAATAAT
GCACCTACCTAGCTCAAATTAGCAAAAGTAGCCTAGACCATTCCGATGAATGAATGTTTT
GAACATGCATTATGTGTTATTACTAACTAAAGGACGCAGCAGGTATGAGATAACCATTCA
CTTTGGCCACTATGGGAAGGGGGGAAGCAAATTCTCTTACTAAAAGGGTGAAAGATCATT
GTCATGCCAAATATCACAATTGCTCGAGATAGTAAGAACTGACGAGGCAATGCCCCAATG
ACATCACACACATGATGATTTTCTGGAAGACCAACTCGATTGATTGAGGCCTAGATCTAG
AACATGGACATGTGAAATTACATCAAAACAAGAATACGAGCAATGCATTTGTTTGCATGT
ACTGAACTCCAATGCATGGCTGCAGTGCTAGTAAAACACATCGCCCAAATGCAAGACGAG
TAAAAAATATATTACAGTATTATTGCCAATCCATACCTCTACGAAGCAGTCATGGAAGAC
CATCCTGAGAAGCTTGCCGGGGATGCTGGAGTCCAAGGTGGAGGCCGACCTGACGACATC
GCTCACCGCCAGCTCCACGCTCGGGCAGGAGGCGGCGTAGAAGCTGGGCGACAGAGCCAA
TGAGGGCGTTGACGGGGAAGGGTTCGCCGGAGGCTGCGTCGGAGCCGGTGGTGGAGTCGG
AGGTGCAGACGGTTTTTGTGGTGGTGGTGGTGGTGTAGTCGTCGTGGGAGGAGACGGCTT
CTGAGCCGGCGCCGGGGCCACAGGTGAAGGCTTTGGTCCCGCTGGGGCCGGGGATGGAGG
TGAAGGCTTTGGTGCCGTTGGCGCCGGGGGTGGAGGTGACGCTGGTGGTGGTGGGGCCTG
CGCCGGCGCACGTGGAGTGGGCGGCCTTGGAACCGGTGACGCCGCGGGTGCGGCTGGAGA
CGATGGGTTTGGCGCCTGCGCCGGCGCGCGTGGGGCCGGCGGCTTCGGCACCGACGAAGC
CGAAGGGCCGGGTGTCTGCTTCGGCGCCGGCGACGCGGCAGGGGGAGACGATGGCTTGGG
AGCCGGCACGGCCGGGGACGACGGCCTAGGAGCCGGCCGCGGCGCCGCGGGAAGAGACGG
TGCCGGGTTGGGCGCCCGCGCCGGTGACGGCGACTGCGCGGAGGCGGCCGCGAGCAGCGC
CGACAGGAGCAGCGCGGAGCAAGCGACGCCCCATTGCCGCCTCCGGCACCGATCCATCAC
GGAATGGAACCCGTGAGCCAGCTCGCTTTCCTCACGAGCCTATCACCCGGCGAGCGAGCG
CGGCGGTGGGAACCAGCTAGCTGGCGAGAGCGAGAGAAAGAGAGAGAGAGCGCGCGCTAG
CCGCAAGGAAACAATGGCGCTGGCTGGCCGGGAGGGAGAATCTACCAAAGCGAGCAGCGC
GTCGCCACTGTTCTTGGCGCCGAGCAAAGGGGCGGTAGTGCAGCGGCTGCGTACTACCCG
ACGCGTAGCCCCGTTTGCTCTCTCCATCTATTAAAGCCTTTTGCCAGGCCAACGCAACGC
TACACTGTGTTCGTGTACGCCAGCTTGCGACACGCCGCATGGCCATGGCGCATACATACG
ACCATGCTCCCCTCCGGTGCCCGCTTAATCCCGTCCCGCCGTACCACTATTACTACTGCT
ACAAAGCCATCATCTCGTTTCATTGAATTGTAATTTTTTGTTGATGTATCGTGTCGTTTC
GTGACGGTGTCATTTAATTAAGCCGCTGGATGGACGGATGTTCTCCCGCCCCCCGCCCGC
CGCGAGCCGGTGCCGGAATGAATGCTCTCACGCCACGTACGCCGCGCTGCTCGGCTCGGC
TCTGCCGTTGCCGCCAGTTGCCACGCTCTCTCGCTCTCTATCCTCTCTCTCTCTCTCGGC
GTCGTTTCTATCACCTTTTTACCGCATGCAATGCGTGGCCTGTTCTGCCCAGGGGGTGGG
GGGTGAGCTTGGCGGGTGATTGGTGTGCCGTAGTAACTGGGGAGCTCTGGCTTCTGCCAT
TGATGCCGGCATTTAGTTGCGTGCCGGTGTTGGTTGGGGGAGGAGGAGGAGGTCGGCGGC
AAGTGTCAAATGCCATCTGCGAATGCTGCAAGTGCATGCAGGCCCTGGGCCCCCGGGGCA
GAGACTTTTTGGGCTCTCCGATTCCGGGCTTTCAAACTCGCTGCGCAGCACCAGCACGGA
ACGCGCGTTGTTGGATGGCCTCGTGTGTCAGCGTCTTATTATTATTATTATTACTGCTAC
TCCGCCGGCCGGCCAACCGCTAGCGCCGCGGGGACAGGTTTTCTTTGCCCGGCCCGGGCC
TGTGGATTTTTGGCGGCCTGGAAAAACCGGTCGCGTTCACATGCCTCTGAAAGAAAGCTG
TGGCCTGGTATAGTATGTTGGACTGGCGCGCGACGGCGACCGAGACGACACACGCACGAA
CGATTCGATGGAAGAACGTGTAGCGCTGAGCTGTTGTGCATTGTGTTATGCCATGCCATG
CCATGCTGCCTGCGTGCAAGCCTGCAGGCGTTCTGATCCGGGCAAAGACGCGTGGCCGGC
AAAAGCTAGCGGACAAGACGAGCGGTGAATCCTCACCTGTTCCCAGAGGGAGTGCGACGG
ATTTTTTCACTTTTCTAACCTATTATTTAAAATTGTGCATAAAATAAATCCGGTTTGAAA
AGATTTTACAGTTTAATCTTTTTGAGACGTTATAAGCCGTGGCGTTGCAGTTCTATTATC
AAACGCCACTCAAATGTGACGTTTCTTACCATCACCAAAACGCCAATCTGTTCTGGCATT
TTCATTTCCCTACAACCCCATGCTAGTGTGGCGTTTCTGTCAAGAACGGCAACGCCAACA
GCTATGGCGTTTCTACTTGCCTATTTATTATGGGGCCACCCTCCACTCACTCTCTTCTTC
CACTACTCTCACCCTTCATCCCCGAGCAGTAGCCACTTTTCCCCCATTTCTCCCCTCTTA
AATCCTTTCAAAAGGATTGCTTTGGTCCGTGGATCCGGTATCATTTGCATTGCTTGAGGT
AACCTCCTTCATCTTCCCATTTTTTATTGGTTGGAATTGTCTATTTGGATGGTTTTTTCC
TCATTTGTTGTAGCCCTAATAATGAGTATAGTTTTTGCAATAATTAGTATAGATGTTCTT
TGTTTATCTACTAATGAGTATAGTTGTTCCATTTATGTTG