Map Locations of contig_39680 (5565 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_39680

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55123 2 1646 bp MLOC_55123.1 Available Available LOC_Os01g70930.1, FRAME:-2, EVALUE:2e-173, 13101.m07719 protein leucoanthocyanidin dioxygenase, putative, expressed





CDS Structure of MLOC_55123






Contig Sequence (5565 bp)

>contig_39680 5565 assembly3_WGSMorex_rbca.fasta
TATAATCTATCTTCATAATCCAGATTATCATAATCTATTATGATTTCAAACAGGCCTTAA
TTACTTAGCAGTTCTGTACATAAACACACGATCAACTTCAGTGTGTTTTGTCTGTGATGA
TATTATAGGATTATAGTTCTTGGCGGTCTAGTTGATCTTGGCGAAGTCCAGCGTCTTCTT
GCCCTCGAGCTTGCTGGTGACGTAGTGCCGGCTGTACTCGCCGTGCTTGAACCTCCGGTA
CCGGCACGGCTCCCCGTCGGCGACGAGCTCCGGCAGTGGGCCGAGCTCTACGTCGTATGC
CGGTGCGTAGAACGTCACGATGGACAGCCGATCCTGCTCGCCGTTGGTCACCGCCCGGTG
CTCGACGCTCTTGTACCTGCCGTTGGTGAGCACCTCGAGCGAGTCGCCGAGGTTGACGAC
GAGGGCGTGCGGGACGGGGTGCACGGGCACCCACGCGCCGTCCCTGAGCACCTGCAGCCC
CGCGCGGCCGGCGTCCTGCTGGAGCACGGTGACCGCGCTCCCGTCGGAGTGCGCGCTCAG
CCCCAGCACCAGGTCCGGCCGCGGGCACGGCGGGTAGAAGTTCATCCGCACGGCCTGCAC
CGCGTCGCCGAACATGCCCGCGAACGTGCCCGGTGCCAGGCCCAGCGTCTCGGCGATGCG
CTCCAGGAGGCGATGGCAGAGCGCCCTGACCTCGGCGGAGTACCTTTCCAGCGTGTCGGT
GAAGGCGGCCGGCGTGGTCGGCCAGAGTTTGGGCTGCCGGATGAACGCCGGGGACACGCC
GAGCGCCAGCATGTTGCACCAGTCGAGCTTCTGGTCTTCGGAGAAGACGAAGGCGTGGCC
GTAGCCCTGGATGCCGCCCGGCGCCATGGGGTAGCGCTCCTTCTCCTCCAGCGGCAGCAT
GAAGAACTCCCTCGACAACCTCTCCATCTCGTCCAGCAGCTCGCCGTCGATGCCATGGTT
CACGACCTACACGTACACACGTACACATACTTTGTTTCACGCGGTAGACGATCGGTGAAG
TGCACGACCATATACTCTCGATTGGTGCGTGCGTACGTACCTGGAAGAAGCCCCACTCCT
CGCAGGCTCTCCTGAGCTTCTCCAGCTCGTCCCCGCCGCCACCGCCGCGCCGGAGCTCGC
CGGCATCGATGACAGGGATCTCCGCGTGCGCGCAGACGTTGGCGCCGCCCGGCCGGTCGT
CGCCGTCCCGGAGGTACCGCTCCGGCACGTCGCCCGCGCACGCCTTCTGCAGCTCCTGCA
CGTCGTCCACCCGCCCGATCTTCACAACCCCACCATCCGTCTCCCCCTCCTCATCCCGCC
GCCGCTGCTGCTGCTGCTGCTTAGGGGAGCAGACGGCCGCAGAAGCCATTGCCGATCGCT
GCCGAATCTTGGTGCCGTCGTGCGGTCGTATATATAGGCTGGCTACCGAGAGAGAGAGAG
AGAGATCACTGGGATTCGTCCTGGCCGTTGTTGGTGGGTGTGGTGTTACGTCACACGTGA
GCTCACTCAGCGCAGCTCCACTCGGGCGGCGAGGAAACAGAGGACGCCATGGAAGATTAA
GAGGGTGTCGTGCCGGTGAAAACCACGGCATCCCATCCGGTCGAGGATGAGGATCAAGCC
GGCAAGCTTTGCTTTGGCTCTGAGCTGGGGTACTACGGAGTAAGTATATTGCTGCCGCTG
CGCTGGTGGCAGGCAGTGCGCGCTCGCTTTAGCCCTTTGGCCGGTTTCTTGGTGAGCTTT
TCGCTTTATTAGTTGGGCACCGTTTTGCGCCATGATCCGCGACTTTGTGACGCGGGAAGG
GCCGAGTGGTTTCTCCGATCAGATCAGACGTTTGTTTGCCAGTTTTGGAGGTGGTGGAGA
TAGGCACGGGCTGGGGTCCGTACCTAAAACTATGATATCCCGTGATGATGGGGACTGGAT
GGACGCTGCCGTGAACGTAGTACCTTTTCTTTTCTCCAGCAGCATTGTTTTGAACTATTG
TATAAAAAGAAACGAGAAAGGCATTATTTGGAACCTTTTTTTGCTTTGCCTACATGAAAT
GTAGTTTTGTTTCTTAGTCAAAAAGTTTGATATGGCCTAGCTCGGCCGAGTGTGCCACCA
AGCCTAATCAACGCTTACGAATAGTTTTTCCCTACGCTCCTGCGGCTAGGGTTTTTCTCC
TCTGAGGTGATCCGATCGTCCCCGTGTTCTATTCCACGTCGATTTTTCCCTGGTCTATGC
CTTCACCGTCCCCGACGGACTCTCCAGACCGTGCACGGATGGCGTCTTCCTCGGATGCCC
GATCTGCAACGAGTGGTGGCGGCGTAGCGGCCGCTAAAGCCGACCTGGAAGACTTCTTCG
ATCAGTTGGATCTCAACAACGAGGAGTTTGCTGATGTGCAGATTGATGAGCAAAATCCTG
AGATTGAAGAAAGCGTCTGGTGGCTTGCCCTAGTGTGACGCCCCGTTAGTTAAGCTACAG
TAATCACACGTTGATTATGCCATGTCATCGAGATTCACTAAGCCAAATTGCTACTTGTTA
AAAATCAAAGCCAAATTTCAAAATTAAAAATGAAGTCAGATAAATGTTTTCCTCAAACCG
TGAAAGAAAAATCTTGGTTAGGTTACAAATATTGATTAAGTAATTGTCATGTTGAACCCA
ACATTATTTGACCCACCAATTAACCCCTAGGAAATTATAAAGTGGTCCAAACGCAAATAA
AATAGCCTTTTCAAAAATAAACAAACATTTAAGATTTTCCGAATGACTTCAAACTTTTTG
TGCTACTTTAAAACAGTCCATAATAATTATGTGCTAAATTTAAATAATTTTTTTACTAGC
TCAACAAAATACAAAGTTTTAGAGGAAATAAAGGAAAAGAACTAAAAAAGGGCGAAAACT
TGTTGCACTAACGGGCCTCTAGTGCATAGGAGAGCCCAGCCCACCTGGGTCATCTCTTAC
CTCCCGCTACAGTGGGAGCAGGGAGTTGCCTTCCGCAAGCCTTGCAAACACAGACGACCG
TTGAAACACGTTGATATCATTATGTGATCCGGCCATGCCGAAGAAAGAGTGTATGATCCA
GAGATCTTGTGAGGCCACGACCTCAAGTATGACAGTGCAAGCCCTGACATGGCCTTATAA
TGTCCTTGCCAAGGAAAAGGACAGTTCTTCCACTCACAATGCATGCGGTCTATGCTGCCA
AGCATCCCTGAGAAGCCACTTCTCGCATTCATCGCCAACAAGCGGGTTGTATCTTGAGGA
GTCGGCTCTCTCAAGTACTCAGTGCCAAACACAACAATCACAACCTTGCCGCACTTGTAC
ATGGATTCTAGGCATGTAGACTCGCTTATACGGACGTACTCATCAATGAGATCATAGTGC
AGTCCGTATGCAAGCATCCAGAATTTCTGATGTTTGAACAACGGGTTGGTTGTGTCAAAG
TAGTCCTTCCAAACAAGGAAATGCCCGCTCTCTCGGTTACGATTCAATGCAAGAAAGGTG
TCCCGGGATCGAGCAACGGAATAACGTCGATGGCTATTAAGGTGGTGATGGAGCAACACG
GCAGCTAAGATATCCTCCTCCTCATCGCACGAGGAATCGTCGAGTCGCAAAGAAAATTGT
GGAAAAATAACTCGTCGACGAAGTCCATTTTGTACCTTGGCAAACGTCGAACAACTTGCA
AGCATCGTCGAAGGAGCTGCGCCTCCCTTGGACCAGGTGGATCGCCTAGAGAAGTCCCAG
CGGCGAGATAGTGGTGGCAGCGAGCTGACGACGTTGGGGGGATGTGTGTCGGCACCGGCA
AATGGGCTATGGCGATAACGCGAGGAGGTGGGCAAGGGTTTGCTATTGATATGGAATGTG
AAAGAATGTGCCGGAAATGGGTCGGCAGGTGGACGAAAAGCGGACGCGCGTCCATTCAGA
TCGACGCATTGAACCGACTATTCTACACGACCCAAACGAACACCCGTGAACGAAATGAAT
CGCCGCGTTGGAGGGCAAATCCTATTTAGCACTGCAAGGTCCGGTTACTAGGTCTGTGTA
CAAACCGGTGCTTGCAGCCGCGTTAACTGGGCTCGGCCCATTACTATTTTGTTCCTGCTT
TATACAAACAAAAAAAAGCATGAGCACCCATGCGATCGAAGGGAACTCCTACCTGCCGCT
CGTTGCAGCAGGGGGTCGCTCCCACGCACACGGGACGCTAGACTGGGCCCGGCCAGCTTT
TTTTAGGTCTAAAAAAAGGATAACTTATTTTTTTTCCTTTTTTGCTTATTAATTTTCCCC
TTTTTTGGCTCATTTTTCTTTCCTTTTTCCTTTTTTTTCATTTTTATCAGAAGAAACAAA
CGTTGTATTTCTCAATCATTTCTTGAAAACATGAAAGTTTTTTAAGTCAGAGAACAAATT
TGAAAGTGCGAACAATTTTTTAAAGCACGATCATTTTTTCAATCTTGAGATCAAATTTAA
AAATCAATAAATTTTTTGAAAAATCCTGAGCAAATTTGTAACCGCGAACAATTTTTTAAA
GCAGAATCACTTTTTTAATCTTGAGAACAAAATTCTGAAACGGAGAACAATTTTGGAAAC
CTTGAACAAATTTGGAAGCTTGAACAATTTTTTAAAAGCATGAACATATTTTGAAACTCG
AGAACAGTTTTTGAAAATTAGAACAATTTTGAAAAATACTGAAGCAATTCATAAACGTAA
ACAATTTTTGAAAACACGAACGTTTTTCAATCTTTAAGAATAAATTTCGAAAAAAGAACA
TTTGCTGAAAAATATTTTTGAAAAAATCAGAACATTTTTTGAAAATCCAGAACATTAATT
CAAAATCCATATTTTGTCTAAAAATCAAAAAAAAAATTTCTAATTTGAATAACAATTTGT
TAAAGTCCCGAATTTTTTTTGAAAATGCAGAATTGTTTTTGAAACTCTAGAACATTTAAA
AAAAACAGAATGGTTTGTAAATTTGAAGAACAGTTTCTGAAAATCCAGAACATTGTTGGA
AAATCCAAAACATTATTTAAAAATCTAGAACCATTTTACAAAAATAGAAATCATTTTTTA
AATTTGAAGAAGAATTATTCAAAATCCCAAACATTTTTGAAAATCTGAAACAATTCTTGA
AAATCCAGAACATTTTTTGAAGTAGAAACAAAAAGAAGAAACAAATAATAATAATAATAA
AGAAAACGAAAAAAAAGAAAAATCAGTTCAGAAATCTCTACTATTAAAGGGGGATCTGTC
GTCGTGATGGTTCGACCTCCCTCCCATTCCCTCGATGGTTCGACCTCCCTCCCATTCCCT
CGATCGCACGTACGTAAAACAATATCCCGCACGCACGACTAACCTCGTTCGGTCCCACCT
CCCTTCGTACCACAACCCCCACTCCTACAGCGCACACACCAGCGATAAGAAACGACCTCC
TTCCGCACCCCGTCCGTCTTGCGATCTGAAAAAATCAGAGAAAACAAACTGTCCACACAC
AACCCTAGCCCACGGATGCACCCACGACTCCCATCTGCACGCCGCCCAGATTCACCGGCG
ATCTGTTTATCGCCTCGTTTCTTCCCCAGCTCCCGTCATGCCTCT