morexGenes - Barley RNA-seq Database

Contig contig_39637
Source Contig contig_39637
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39637 (5252 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39637

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55081	3	2174 bp	AK367031	Available	Available	None
CDS Structure of MLOC_55081

Contig Sequence (5252 bp)

>contig_39637 5252 assembly3_WGSMorex_rbca.fasta
CCTTCGTCCGGAATTATTTGTCATAGCAGTGGATGTATCTAGATATATTTTAGATCTAGA
TACATTCATTTATTTCCATTTTGGTGACACAAGTAATTCCGGAAGGAGGGAGTACTATTC
TACCAAGAATATTTCACTCTCCGTGCCATATTATCTCAAACTGTATTAGCATAACAAAAT
GCACATTTTTAGTTCCCAGTTAAACTTTCTCCTTGCATGAGTAGAAGCTAACATTTGATC
TAACCATCTTAGTCTCAAAATTCATATGACAAATCAGAAATCTTACCCTAAATTCAGCAG
TGAAAGGAGCAGACCTGTAGTGCCCACCGCTTAAAAAATTGAAGCCTGGAGCTCCTTCCT
CTCTTGTATCATGGTCCCTCCTTTTCCAAACGCAGGTGGAGTCACAGTAAATGCGGACAA
ACTTTATTCATCACTTATCCAANNNNNATTTACTAATAAGCTACAGATATATGATGCAAA
ATTCCTTCACCAAAAAGATATATGACACAAAATGATAACTGAATAGTTATAAATGCTTGA
ATATTACACACAAATTAATCACATCGTATAATGACCATTAGGCTAACCTATCACAGATTA
TTCTTAAATATATAAATTCTACAATACAAGGTATAATTACAATATAAAAGTTAATCAACA
ACAAGTTTTCATATATCTATACCTTCGCTCATATGTACCACTACCTAACATTAAATTACA
ATAATAGATGGACGCAGCAACGCGCGCCAGCATGATCTAGTCGACAAGGTAAGGGAGCGA
CAACGGCAACGCGTCAACGGGTACTTACCGTTCGACGATCTCGAAACCTCGAAGCAAATT
TCGTTGCGTTCGAGATGTTTCATATACTTCGATGAACTTTTATAGTAGATCGGATCATTC
TTCGGCAAACAGGGAGAAACTACACATGGCACGGTGGAGGACCAGAGAGTCCACGGACCG
TCGTGAGCGGCGGTGCGCCGAGTCCACGGAAGCCCTCGAGCGAGAAAATGGGAGCGTTGA
TTGCCGCTTCCTATTTTCGGCCGAGGCTGGAGAGCGGGAAGCGCGCCCCGTTGACGCTAA
ACTAATCGAAAGAAAAACCAATCGCGGAGTCAGCGGGGCCACCCACCACCCTCTGCGCAT
GCGTGCGTGCGTGCGTGCGCCTGGTCCACGTGCGCCGCCGCGCCCGACCCTGGTCAGGTC
CACGAGGACCCGGCGTTGCCTGGTGGTGGGCTAGCGCCGGTTACGTTTTGACCCGGTCCG
CTGTCAGCGGCGCGTGGGGGGTGCCGTCACCGTCACCGTCAGGGGGCTGTTTTCGGGCCC
GTTTGGCGCCAACGGAAAGGCGGGACGGGGTGACGGGATTGGACCCCCCCCCCCCTTCCC
GCGGAGCGCTACAACTACTAGTCAAACTGCGCCGCCCGCGCGCCTCGTCGGCGTCTGGCC
CGGCTGCTTTTGACGGTTCGGCGGAGAGAGCGACGGGGCGGATCGTGGATCGCATTGCTG
TGAAGTGAAGCGAGGCGACGAAGGTCACGCGTGTCGTGTGCCGTGCATGCCCGTAGCCCA
CGCGATCATGGTTCATGGGTGACCGGCGTTAACGTGGGAGAAGGCGGCACTTGGCTCGTG
CAAAAGCTCAGCGCCCCATGATCACGATTGTAGTTAAAAAAATTTAACATAACACGGACG
TACGCGTTCATGTACACGCGCATGCATTTATCCTTATAAACACATACATATAACTTTAGA
TTTACGAAGTCATGTTAGGCGTCTTTTCATCGACGAAAACGTCTTTTCCATTGACAACGT
ATTGTCGAAAATGCTAATCCATAAATAATGCAACCATAGGACTTGAATCCTGATGGGTTA
AAGATATCACGTTCCCTTTAACCATCCAACCATAGATTGATTTACAATCACGTTATAGTT
GTTGGTTGGTTTTCCAATGCCGTAATTTCTCACTCTCTGCACGCAAAACGTACCTCGATC
GGCTAGTGTAATGCGTCACTGGAGTAGCAACTAGCATGGCGGGGAGCGTCGTACGCAAGA
CATATGAGCTATTCTTTTTTGACCTGAAATCCCACACGTCGGGAGAGGCATAGTCAGGAA
GTGTAGTCGTGCTTGTTTAGGAAACATAGATAGATTATGATTTGTTTCTATCTTGATTTA
TACTTTAAAATGATCATATACTTTTATATATATGTTTACGAGGCTTAAGCTATAAAGCAA
CTATTGTATCAAATCTTTATTTCCTTTTCAACATGGTATATGCCGTCAGTTTCTAGACCT
AGCCGTTGCCCATCGCTTCTGCCCCGCACGCCGTCGCCGAGGCGGTCGGCCTCCATGACA
GCCGGGGAGGCTGCGTCGCCCGTATCTAGGGTTCGTCCGTCGGTCGTGTTTGACCGGCTA
CCCTAGAGAGTCTTTTTCTCGATCTCTTATCTGATTTTTTTTCTTTCTTCCGTCGATCGC
TTTGATGGATGTTTTTCTTTTGCTTTTCCAATTTAAGATCGATTTACGTCGCCCATCGCC
GTCGTCGGTCACCGCCTCTACTCCAACATCGGCGCGATCCGACCTCTCCATCGACCCAAC
GACCTCGCGCGACGCGGTAGCCCCTTATGATCGTTGATCGCACATTTGCTCGCCCGTCAC
CCTACACCGACCGTTGCCGCCCTTCTCCGTCCGAGACTGCTTCATCACCACCGCCTCCAC
CGTCGGGTCACGCATCCGCTGCCTCGTCCTGTCTGCGTTGGGCCGGCTCCCAGCTCTCGC
CCGTCGCCCTGCACCGGCCGTTGCCACCCTTCTCCGACCGAGACTGCTTCATCACCACCC
ACCTCCACCGTTGGATCGCGCATCCGCTGCCTCGGCCTGGCTGCGTTGGGCCAGCTCCCG
GCTCTGGCCGCGTCGGCTGGCTGCCTCGGGGCGGTTCCCGCCGCCTGCCTCGAGCTCTGT
CGGCCTCATCGACTGCGTCGGCGGTCACGTCAAGCCAGCTATCGGATGAAGTACATGGTA
ATTCATATTCCAGGGCAAGGTTGACACTAGAATTGTAGAAGATTCATATTCCATGGCACG
GATGACACTAGAATTGCAGAAGTTTCATGTTCCACGGCACGGCAGACACTAGAATTGCAG
GAGAGTTGATGCAACAGCTGCCTTATATAAATAGTTGGTGTCATAGTGTATAAATACAAT
TCTGACATGATATACTCTAAGCAACAAAGAACAGGTACCACAAATGGGGGCAAAAAAAAG
GAGAAAAAAATCACAATGTACACTGCAGGTTTCGTAGACAGTGGTTCTCAGCGGCATGGG
GCGACTAACAAAGGGGCAATAATTTAGATAAAAATCCTTCCGTCTTCATCTACAACCAAA
AAATCCCGTCTAACCCCCTCCGGTATTTACACTAGGGGGGCAGATACTCCCGAGCGCCGA
TGATCCGATCAGCAGTTGACGCCGCACTGCCCCATGGCAACGGCCTTCTGGGTATCGGAA
ATGAAAGGGTCGATCTTCACCCAGAGGAGGGAGAAGATGGAGGCGAGGAGGATCGACCAA
ACGATGACGATGGTCGGCGTGCGGTTCTGCTTCCCCATGAGACCCTTGAGGAAGGGGTAG
AGATGGAGGATCACCCAGATTGAGAAGAAGAGCTTTCCAAAGAGCGGGCCCCAGGATTGG
TAACCGCTGTTGATGGCGTATGATATGCCTGCCACCATGCCCACCAGGTTGATCACGAGG
ACGGTGGTCGGAGGGATGAGGAGACTGGTCCACTTGAACACGTATAGCTCTGCAAAGTCG
CCGTCCTCGTCGTTTGCCTTGGAGGTAACCGTGAAGTTGGTGTCGATCCCAGCCAGCACC
TTGAGCAGACCCTGGAACACCGCGAAAAGATGGGCAGACGTGCCACCAATGACCCAAAAC
TGCTCGTTTCTCCACCAGTCCTCGATGCCGACACCACTCCATCGGAGCTCCAATATACCA
GTGGCAAAAATGGACGCAAACATGAGAATAAAGAACATCCCAGCATAATTACTGATCTGC
ATATCACAAAGAAAAAGAATATATCAACATTAGATATTTTTCTGACACAAAGCCACCACC
TGATAGTGAAAGGGTTTCTTCCTTGAGACTAACCTCAGGAATGATAAACTTGTTGGTGAG
GAGGCAGATAGCAGGGAGCACACAATAGGCGATAAGTGGGAGGGATGTTATTGGATAAAC
AATGGTGTTGATGTAAGCCACCCTCTCCAGAAGTTTCAACCGCCCACCGTAATTGTACCA
GATAGGACAATGTCTGCTAAACAGAATTTCAACTGACCCGAGAGCCCATCGCAGCACTTG
ATTAAGACGGTCAGACAGATTGATTGGCGCAGAACCCTTGAAACAAGGCCGTGGTGGCAT
ACAGTAGATTGATATCCAACCTCTTGCGTGCATTTTAAACCCAGTAAGAATATCTTCAGT
AACTGAACCATAGATCCAGCCAATCTGACACAAAGTAGAAGAAAATCTCACGTTCAGTTT
CGTATCTCTGCATAGAGAAAAGAATGACGGAGACTGTGACTCTCACACTAACCTCTTTTC
CCCATTCGGTTTTGTCCTCATATCCACAGCTGATGACATGGATGGCTTCCTTTAGTAGAG
AAGCTGGGTTTGTTGAAGGTGGTATGCCTCCTTGAGTCATAAAGGTGGATGCAGTAAATA
TAGGAGACTGGCCAAATCGTTTCTCCAATCTCTTCTGGGACATAAGCATCGACCTTTCAT
CCTCATAACCTGATGAGATTCAGAAAGAGTGGTTAGTTGAAGCAAGTCATAACTCAGAAT
CTCAAGAACAAAAGACAAGACAAAGTAGAAGCACGATGTTTTAGTATGCAGTATATACAG
CGCTTGTCTTCAGATGCCAAGAATAAATGTCAAGGGAAAAATTGCAAGCACATACCTTCT
ATACCCTCTTCTATATCTTCCATGTTGAAGATGGGAGCAGAAGACTCAGTTCTCTTCATC
ATGCGGTTTTTGTTATCCATATAGCTCTTGTTCTTTTTCTTTCTGCCACCGCAGCAGCTC
TTAACAACAATGTTAGGTTCCAAATCAGCCTCAGTTAATACAGGATCATAGCCATACAAG
GCCTGCCTGTTGAAACAGCATCCTGTCCCGACATACATTGGACCCTGAATGCCATCTAAA
CCTTTCATGTTGATCTACAAAGAGGAAAACCATGTAAGAGACAAGAAAGTGTTGTCGTCA
TGATGAACAGACACCACCAGACTTACATCAAA