Map Locations of contig_39625 (8620 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39625

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55071 4 4149 bp AK369390 Available Available None





CDS Structure of MLOC_55071






Contig Sequence (8620 bp)

>contig_39625 8620 assembly3_WGSMorex_rbca.fasta
TCTTACAACAACAGTTATCAAGCAAGCTTNNNNATGTCGCCTTTCGAAGCATTGTATGGA
AGACGATGTCGTACCCCTCTCAATTGGTCAGAAACCGGAGATAGTCGCATCTTTGGACCA
CAATTCTTCCTAGAGGCACAGGACAAGGTGAAAATCATCAGAGAGAAACTCAAAACAGCG
CAAAGCCGTCAGAAAAGCTACTAGACTAGAAGCTCAGGGATGTTGGTTTCAACCCCGACG
ATTATGTGTATCTTAAAGTATCCCCCATGAGAGGTCTACAAAGATTCAAGGTCAAAGGCA
GACTTGCACCTCATTTCATCGGACCATTCCGCATAATTGCTCGTAGGGGACAAGTTGCCT
ACCAGCTAGATCTACCAGCGGAGCTGTCAGATGTACATGATGTGTTCCACATTTCTCAGC
TAAGAAAGTGTGTGAGGAACCCCGAGCAACAAGTAGCTCATGACAACATAGAAGTACAAC
ACTATTATGCTCAGTTGTCTGCTATTTGTGTATAATTGTCATAATTGCACTCGAGTATCA
CAAAAAAGTAAACAACTTTTAGTGTATTTTTTGCGCAACTCCACTGCATTCAACAAGTAA
CTCATGTGTATACACATGATGCAATACAACTAGCATTAAAGTACTTCTGTTTAGCACTAA
AATTGCCTCATCTAGCTCGAAGTTGCTTTCGAGAAAAATTCTTCAAAACACATTCATATA
GGATCTCGTTTTGAAGAGTTCATCACGAGGAACCCAACGGTGAAAACATATCATAATTTC
GACACACGGTTTGATAGTTATAGCTTTTTGAATTTTTTTCATACATGAATTAATGGACAT
CCAACGCATGCGGAATCGAGCATGCACATCCGACGCATAATTTAACCATTTCAGTTTGGA
AATAGCTGACCACATTTGACATATGGTTGCTAAAGGATGAAGTTATTTAACCTTCTAGTC
ATGATAGATAATTTTAAAGGAATTTTCATTGATAGGTGAGCATACTACGCACACTAATAA
GAAGTTGCTTTTCTTTAGCACTAAAGTTGCCTAAATATCATCCCACAATTGCTCAAAAAA
AAGTTTGTCAAAACCTATCCATATGGGATCTAGTTTTGAAGAGTTTGTCGTAAGAAACGC
AGTCGTGTAAACGAATCGTCGTTCTAACGCTCGGTTCAAAAGTTATAGTATTTAAAAAAT
GAAATAAAGTAAAATGATGTGCTGCGTGAGGATGCGCTCGTTCCACCGAAATAATACAGC
TGCACTTTTTAATATTTAGGCTTTATAATTAGTGTGCATGAATGGGTAGAATCTACCGTC
CATACAGAAGAAGGATGTAACGGGCAGCTTTGCTTGCTCTATTATAAGGCCATGGGAGCA
TGTCGACCAATAGGTCATGTTTATGAACATGAAAGAATTGGGAAGGAGATGAGAGGCTTT
CGTGAAGAGTGGTACAAATCGCATGATTGGTTGGAATATAGTGTTGCTCAAAAGGCTTCT
CTTTTCATTGTTTTCTCTTTAAGCAGCCGAGAGCTGAAAACTATAGAATAGAAGCATATA
CAAAAAAAAGGTTTTAGTAACTTGAAAAATGCTATTGCATCTTTTGATACTCATGATGGT
AATGTTAACAGCGCTCATAATAGAGCAAGAAGGCAATGTCAAGCTTTTCAAAACCCGAGG
CAAAATGTGAAACAAGTATGGGCCGGTTCAAACAAGAAGAAGGAGGAAGAGTACATGGGT
CGACTAACTATCATGTTAGGTGTCGTGAGGTTTCTTTTATTGCAAGCTCTTGCTTTTCGT
GGGTATGATGAGTCCGTTAGCTCAAAAAATAAGGGGAATTTCTTAGAGATGGTGCAATGT
TATAGAAAAAAAGATCTGAGATCCTTCCATTGGTGAAGAAACAATGGCCTTGAATTAAGC
ACGTCTTCACTAATTTGATACCAAACATGATGCACTTTGTTAAACTATTTGTTTTATGGA
ATTTTCTCTCATGATAATAATAAATTTATATTACGTTTTGAATGTGATTTTGTGGCACAC
TTATAGCACACATTATTGTGCGTGCTATTTAACGTTATGTGGTGTTTCTTTCCAAGGACT
TTTTGGTGTAGGGACAAAAAAAAAGTCCCTTGTAGTCCCATGTGAAAGAAACACGAGGGA
CTTTTAGGGACTAAAATGGGTATTTGGGACTAAAGGGAGAAGACCCTATGAAATGAGACT
TTTTAGACTTTTTTGACACTTTTTCCAACAGTGCCTCTACTTTTAGCATGCCATTTAATA
ACTTCTAGTGTATTACTAGTATGGGTAATATGGTATTTTTACATGTCATTTAATGACCTT
TAGTCCATGTTTAGTCCTTGAGAAGAAACAGGTATGGATGATAGACTTTTTAGTTAAGAT
TAAAAAGAGTCCTAGAACTTTTTACAGAAACAAGGCCTATATTTAGCCAGTTAGTTTTAG
CTCTAGGCTTTGAAAAATCCTGGTTCCGCCTCTGTCAGTAGCCCATCCCTAATGACGGGA
GTCCGTCTGTTGCGATATCTGTTTCCGGGTCTTTATAATTGGTATGCATGAATGGACAGA
ATCTACCGTCCGTACAGAAGAAGGGTGTAACGGGCAGCTTTGCACGCCCGTGTCGGTCGC
CGCCGGATCGACGAGAGATGATCCGACCGGGCCAACTGGAGCGAACGCGACAGGCTACCA
AAGCACGCATCATGCATGCATGGCACCAGCACCTGCATGTACACACGCGATCCAATCGAT
CGGGGTTCCGTTCCCGTGATACATCCATTCGCATGATGGATTACGCCGCTGCAGATAAAC
AATCTGCTTACCTTGGTCGCTAGCCCCCGCTAAATCCCGGGGCGGTGTACGTGCACGTGA
GGGCGCACATGCACGGTCGCCCCGGCGCGCGGTGGCGGTGGTGGAGCAGAGCACAGCATG
CGTCCATCGCTCCATCGAACCGCATTTATAGCTAGCTACCGACGTGGAGTAGAGCAGGAA
AGAAGGAGCAACAGTGGAACCGTATATATGTGATGATGCATGCATGCATATGTGGATGGA
TGGATCCATCGATCCGTGGCACCGACAGATTGATTGATCCGTTGCCAGCCAGGCTGGCCG
GCGGGTTAATCCAAATCGCCTCTACGCGTGATGGATCGAGTGACACTCTACTGGCAGCTA
TACTCCATAGTAGTATTATCTAGCTTGATTTCACTGGCCCAGCTAGGTCGACTCACTCAC
TGTGCCGCACGGCTGCCGGCCAACGAAACCGACGCATCTTTGCTGTGGTCACGGGCGGGC
GGTCCAATATTTTCTGTTCGGTGCATGCCAAAGCTCATACCATCTCACAGCAAAACTACA
GTTGCCACTTTCGCCCGGCTGCGTGGGGCTTCATCGCTAGGATGGCAAAATCCTACTAGC
TCCTACCGTTGTACTCCAGCATGCATGTGCGTGATTAGCAAGATTAACAGCTGACAGCCG
AGATGACGACTCGGATATTTATTACTTGCATGCGACTGCAATTTCGGCGTCCACAGTTTT
TTTAGGGTCCACGGCTTGGTGTAGATGAGTGAGGCAGTCGTCGTGGGTGGTGGCGCACCC
ACTCGCTCGCTCGCTCACTCACTCACTCACTCCTCCACCGAGCTGACTGGTTAAATGCGA
TCCGCCAAACCCATCTTGTAATGCTACGTTAACAGCCCGAGACAAAGCCAATAATGTGAT
GTATGACCGGCCAGATCGAATTAAAGAAAGCAATTCCCTGAAGTGTATGTACGCGCGTGG
GTGTTTTTTTAGCCATATATACGTACGGCGTGCATGCGGATCCACTGCTCCACTAGTCGG
TTGACGTTGAACATACAGGGAAATGGGTCAATCTTGGCAATCAAGACCAAACAGTCGGTC
TAAACAAGCATGTGACCTGTTTTCACCCACTACGCGACAGTAAAAATTGTTTGTAACTCT
GCTTGATGTTTTGCTTTGGGTTGGCCGAGTCGGGGCGTCTCCAATTAACCCACAATAAAG
CACCCGTGGATGGACCGATCATGGCACCCACTTGTGGTCAATCGTTACCGGAAGAAGACG
ACGATGGTGATGGGAGTGGGCGCGTGCCTAACCGTCGTCAATGGTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTTTTTAGGGCGTCAATGGGGTCTTTAAAACTCCCTGGAGTGTCCGGCC
TACACAACACAGAGGGCGGCCAGGCCACTGCTAGAGATACTCCCACATAATTGCCTGCCC
AATCAGGCTGCCAATTCTTGTTTGTTAATCCGGTCGTTTTATTTATGCGAGTAGTAGTAC
TCCTAGTAAGGATCCTTCCGGTTTTATATTCATTCAGCTTCAGATCTAATCTAGCAATGG
AGTAGTTTTTCCGTAGTAACGTAGATCTTCCTTGGCGGGCCGAGAGCCCATCAGCCGACA
CGCATCTGCCTTCCTTCCTTCCTTCCTTCCTTCGCCGCTAGCTATATATCGACCGACCGA
TCGATCGTCCTCAAGACCTCCCAACCTCTGCTCCCCGGCCTGTCGCCTGGCTCCGTTTGG
CTCCAAACTTCCACTTTCAACCCAAAGGTACGTCTTTTTGTAGTAGCAGAGAAAGATTTC
ATCGTCAATCGATAATTCCGTTGCGTATCCGGTCCGGAAATCGCGTCGCGTGCGTATTCT
CGTACGGGGTTTGTTACCGATTCTGACGCCCACAATCAATCAACAAACTTTAAAAAATCA
GGCCCAATCCCATCCGCAGGGCAGAGGGCAGAGGGCAGGGCGATGAAGTACAGCAAGGAG
GCCAAGCCCGAGCGGGCGGGCGGCGGCGGCGGCGCCGGGGCGAGGGCCGTGCCGGTGGCG
CTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCTACCTCGGCGGCATCTACAGCACCGGC
CGCACCTTCACCTTCTCCACCACCACCACCAGCATCATCCCCATTGTCTCCACCACCAAA
CAGGAGGGCTCCGCGATCGCCCTCGCCATCGCCGGCCACGGCAACGGCAACGGCGACGAA
GAGGTGGAGTTCTCAGAGTGCCCCGCTGAGTACCAGGACTACACCCCCTGCACCGACCCC
AAGCGGTGGAGGAGGTACGGGAACTACCGGCTCAGCTTCATGGAGCGGCACTGCCCGCCG
CCGCCGGAGCGCGCCGTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGC
TGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAACGTGCCCTACGACTGGATCAACAGC
CAGAAGTCGAACCAGCACTGGCTGCGCAAGGACGGCGACCGCTTCACCTTCCCCGGCGGC
GGCACCATGTTCCCCAACGGCGTCGGCGCCTACGTCGACCTCATGGCCGACCTGGTCCCC
GGCATGAAGGACGGCAGCGTCCGCACCGCGCTCGACACGGGCTGCGGCGTCGCCAGCTGG
GGCGGCGACCTGCTGGCCCGCGACATCCTGACCGTGTCGCTGGCGCCCAGGGACAACCAC
GAGGCGCAGGTGCAGTTCGCGCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCATCTCC
ACGCAGCGCCTGCCCATCCCGTCGGCCTCCATGGACATGGCGCACTGCTCCCGGTGCCTC
ATCCCGTGGACGGAGTTCGGGGGGCTCTACCTGATGGAGATCCAGCGGGTGCTCCGGCCG
GGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAACTACGAGAACCGGTGGCACGGCTGG
AACACCACCGTGGAGGCGCAGAAGGCCGACTTCGACAGGCTCAAGAAGATGCTCGCCAGC
ATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCGTGTGGCAGAAGTCCCTCGAC
GCCGGCTGCTACGACAAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTC
GACCCGGACGCGGCCTGGTACGTGCCCATGCGCTCCTGCGTGACCGCGCCCAGCCCCAAG
TCCCGCGCCAAGGCGCTGCCCAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGCGCGTC
TCCGTCGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACGACGACGGCAAGTGGAAGGCG
GCCACCAAGCACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTC
ATGGACATGAGCACCGTCTACGGCGGGTTCGCGGCGAGCCTCGTCAAGGACCCCGTGTGG
GTCATGAACGTCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGG
CTCATCGGCACTAACCACGACTGGTACGCAACTACGCATTACCTCCTCTTCCAACTGCAC
CCCTGCTTTGCTCGACGACTCTCTGTTCCTTCCACATTGCCAGAACGGAATTAACCTGCT
GGTTCTCACTTCTCAGGTGCGAGGCCTTCTCCACGTACCCACGTACGTACGACCTGCTGC
ACGCCGACGGCCTGTTCACCGCAGAATCGCACAGGTAAGTACAGTAAAATCTTGCTGGGA
ATTCAGCTCAGACGAGGAAAAGATGTCAAGTTGCTGACGGTTTGTACCTGGCATTTGGCA
TTGCAGATGCGAGATGAAGTTTGTGCTTGTTGAGATGGACCGCATCCTTCGCCCGACCGG
CTACGCCATCATCCGGGACAACCCATACTTCCTCGACTCCGTGGCCTCCATCGCCAAGGG
GATGAGATGGACCTGCGACAAGCATGACACCGAGAACAAGGAGAATGAGAAGGAGAAGCT
CCTCATCTGCCACAAGCAGCTCTGGTCGCCAAAGAAGGCATAGATACGATACGAACCAGC
AGTCGCGGTGACAAGAATTGGCCATGATCCCAATGGAAAGGCGAGGGTGATTCATAGTCA
GCAATTTGATAGAACAAGAGGGTTCATAGTCATCAAAATAAATTACATGAGTAATATATA
TATAGTTTATATCTTATCATATACTGTATTCATATAGGAGGATCCAATAGTTAGCTATTG
ATCACACAACAGTTGATTCTTTTTCTTTGCCGAAAAACCGGGGGAGGTAAAAGTTTGGTG
AGGCACCGGTAAGCCGCAAGTTGTTATCCAAATACTGTATGCATGTCCTATAGCTAGTCA
GTACTGTGATTGTAATCAAGCAATCAAGCGGGTTGGCCATATATATTATTTGTTCAAACA
TTTATGGAGCATGAAGTGATAGTGATGCAGTATCATTCCTTCCCCCCAGTGCAGCGATCA
GTTAGTTGTGTGTTGCTGTCACCTGTCAGTCTGGTGCGGTGCAGCCAAGGTGCACCTCAC
CCCCGATCTCTCTGTTTTCCAGTTATATAAACCACCTTGTCTATGTAACACTAACACTGC
AGCTTTGAAGTACTAGTAGTACATGATACAAGACGCAGAATTTGCTTTGGTTACAGTAGT
GGCCGGTTGCTGGAGCAAGAGATGCATTGAATAACTGACCAAAAAGGACTACTGAGTAGA
AGAGTAGCCTTCATTGCTTCCGCTCCCATTTACCTTCCCGTCTACCGTCTCGCTCTCTGC
GCTCCATGACCTGCCTCGACGACTTGCTGCTGCCGGCTCGTGTCCCGTGCCTCGAGCCCG
ACCCCGGCCCGTCGAACTCCGGGTCTCCCATGCTGCTGGTATCGCCACCGGAATCCCTGC
TTCCCTCCGCGTTCTCCTCGTAGCCGCCATCGCTGCCACGGTCGCGGGATTGCAGTATCG
TAGGAAACGACGATGGCCTTGACGCACCACCCATCACGACCGTTGATTGACCCTCGTGGC
CTTGGCCGCGGCTTCCCTCCTGCTGTGCGCCTCTACCGTTATCCCTTTCACGGTACCTCT
CCCTCGCCCGGCTGCGCAATGTTTGCCAATCACACAGATGTTGCGAGAGATGGCAAGAAC
AGGCGAATCGGTAGGGTCGATCAATACCTGCTGGGGTTGGTTGAGAACTCCCGCCTCGAT
GACCGCCCCAACTCGACCTGCTCCAGCTCACGTTGAAGCTCTCTCTGCACAAGTCAATCA
GCACAGCATATGATGCAACAGGGAAAAAAAAAACGTATGGCGATGGCAAACAAAACACGC
CACGACACCGATAAGCAATTTCAATTTGAAAGGGTAAAACTATAGCATATACCTGAGTTT
GTTTCTCCCTTTCCATATCGAGGTTATATTGCAGTTCCCTGGACTTTGCACGCTCAAGAT
CCAGCTGTCGCTGCCTTTCGATGTCACGCTCCATCTCAAGTGTTCTTTCCCTGCAAAGAT
ATTGCAACAAGGAAATAAGAACAAGCACATATGTCGTTTCTGACATGTCAAATAAAGAGG
CAACAGCTCCAAACCTATCAAGCTCTTGCATAAGCTCCATTTCCTTGCAACTCGTCTCTT
CCAAGTACTTTTCACGGGTATGTCTGATAAGCAATTTCTTCTGTCGGCGTGCTATAATAT
CCTCCCTGAGCTTGGACCGTTCTCTATCAAGGAAATACATGTTAGCTGCATAACAAGTAA
CGCTAACAGTAAGTTCCAAGGATTCTATCCCTCAAAAAAAAGTTTAATGCTTCTAAATTA
AAATTAAACTGGTGTAAGAAAATAGTACTCCCTCCGTCCC