Map Locations of contig_39582 (10884 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39582

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55023 1 818 bp AK356730 Available Available None
MLOC_55022 1 2139 bp MLOC_55022.1 Available Available None





CDS Structure of MLOC_55023






CDS Structure of MLOC_55022






Contig Sequence (10884 bp)

>contig_39582 10884 assembly3_WGSMorex_rbca.fasta
GAGGGCAATCGGGGGCCTTTTTTTGCAAATCAGGGGGCCTGTTTCTCACTCCCCCTCTCT
TTTTTTCTCCGGTTTTTTCCCATTCTGAGTTGCACGTGTGGAATGCATATGCTTCAACGC
TTATATGTGTATCTATTGTAGATTTGGCAACACATAGTAAAAATGTTGTAAAAATTATGT
TTCTTTATTGGAGGTATCCTTGTAGTGACATAACAGTTTTATTATCAAAAATCAATTGTT
ATTAGCTTCAATCTCAGTTTAGTCTATATACAAACTACTGCCAAAATGTTCTGGCATAAG
TAGAAATCACACAAGGTAGAATCGAAAGCACACTATGAGAATATCGACTTTGTTTCACAT
GTTTTAGGCATAAGACCTACTTTCAAACTAATAGAAGTAGACCTTATTCCTAACCAAAAA
ATTTATATAAAATTTTGTTCCTCTTGTCATGGTCTTTTTCGCCCCCCCCCCTATGCTCAA
ATCCCGGCTCCGCCCCTGTGGAGGAGGCATGGGTTAGAGTCATGTGACTAAAGGAGAAGT
TGTGCACATGGAGCATCACATTGCAAGTGGCGAAGAAAGCAAGCATGGCGGACTTTCTCG
ACGAGTGATCAATGAAAGACACGGAGGCGGGGTTCGGGTGCGCGTCACTTTGGATGTCCG
TAAACCACTGATGAGATGTGCTAGTCTAACCTTGAGGAAGAAGAAGGTTTCTTGATTTTG
AATATGAAAATATGGCCATGTTATGTGGTGTTTGCAGCTTGGTCGGTCAAGCATCAAGCA
CCATCATCTACTCGCCTACTATAATCGTTGTTGAATCCGTACGGAAGAGTACTTTTCGAG
TGGCGGTGGCAATAGAGGAGGCAGTGTGAATCGCGGAAGGGGCACATGTGCTGGTGACCT
TGGTACCAACATGCCAAGGGAATACAATCTAGATGATGAGAATCTCAAGAGTACAGAGTC
TAGCCCTGCAAAACCCCCCAAGTGGAGTGCTTCGTTCTTCGGGATCCACCAAGAAATGCT
TGGGTTTTGAGAATCAAGATTGTGTCAATATGTCAAGGGGGCTTCTTATGTTAACAGATG
GAAAGACTACTGACCTAGTTGATACTGAGAACTTAAACAAGAAGTGAGAGGATGGTGTTG
ACGCTACCTCATAGGACATCAAGAGGCAGAAGGCGAATGAAGCAACAACTATGGACTTGG
AAACATTGGTGGGCTACGGTGTGGAGTATCGTCGGGCCTAATAAATCGCCTAGTTTGGAA
CATCCGGACAATTCGGGAGTTGTTGGAGCTCACTCAAGCCAACGCAAGCTTGTTTTCTTA
TGTGAAACTATAGGCAACCTTCAATTCATATTCAAAGGTTGGAATGCATACTAGGTATGA
GAGGAGTCACTGGACTAGATGGGCAAGGGCTCGGTGGTGGTCTTGCTCTCTTTTAGGATG
AATGTGACTAGTGGTGGAGCTTAGGGTGTGTTTGGTTCTTGTCACCAAGTGGAACGGCAC
GGGTCAGTTCCGCCCCGAAGGCCCATTCCCGTGTTCGAATCAACAAAGGTATCGGAACCA
CTCGATTCTAAAAACGGGATATTCCTAGGATAAGTTGTCCCGAGGGGTCTCTTGAAATCA
AGCGGACCACAAGGGACCGCGAGATCTATCCTCCCCCTTCTCTCGGCATTGCCCCACCTG
TGTGCTTTTCGCTGCCCGCCTGCCCACTCCACCGTTGCTCGTCTGCCTGGTCCGGAGTCG
TTGTTGCCCGCCTGCTTGATCCTGAGTTGACGCAACTCGCATGATCGTTGCACCGATGCT
CGCCTGACACCCGCCTGCCTGCCTGTTGTGGAGCTTCTACTGCCCGCTTGCATGCTCCGA
CACTGCTATTACCCGCGTGCGTGATCTGGCGTCGACGGAGCTCACTTGACCTCTCCATCA
TTGCTCGCATGCATGCTCTGGCGGTGCCACTGCCTGATCTGGTGCTGCCGCTGCCCGCTT
GTGTGCTTTGTGTAGCTCGTACAACCTCATTCGCTACTTCTCCCGCTACCTCTCCTTCGC
CGCGCGGTGGAAGAAGGAGTTCCTCGGGCCGGAGGGACGGCGAGGTGGCCGGATCAGCAT
CCTGGTGGGCTGGTGAGGGTTGCTTATTCGTTCCTGCCCAAAAGACTGTTCCACCCTATC
TCGTTCCATTCTAACCAAACAACAAGATGGAATGGTTCTAGAACCAAACACATCCTTAGT
GCAATGTTGGGGGGCACCCCCACCCCCCGCCGCCCAACAATGTGACAGATACGTAATGCT
AATGCGAGGAGAACTACATATGTGTGTATATGCCAAGCTGCAAACAAAAAAGAAAACCTT
ATGTGGGAACGTCAAGCACGTTTGGTGATGATCTCTGATGATCTCACCTTCACCAACGAA
TCGACGGCCATTCGGCAGATAGTGGTGAAGGGTAGCACGTGGGACACAAACATGCCCGCA
TCGAGCGAGGAGCGTATGATAGAGGCGAGGTTTCCCCAGAACATATCCATCAATTCGTCC
ATCCGTCGAAGTGCCAACCAAATCATGCACGGTAGGCACGGTCCCCTACTTTCTTCCATG
GCTCACTAAGGTGATGCAACCCCAAAATTTTCTTCTCCATCCGTCTACGGACGCAGAAGA
CCAGTCCGTAAATACGGATATGAGAGACTGCCATCCAATGTTATTCGCATATATTTCAAT
TTGTATTGAACTAACCGTACGAAATTTAAGCAAACTGATCGATATTCATCAAACTTTAAA
CAAAAAATAGCACAAATCATCCATGCATAACATGCAAACCAAGTCTAATACAACAATGTC
TTCAATTCAGCTAGATTAACCGGATGTCCAACAAGTTTTTCATCAATGGATCACGCCCTC
CCATAAATACTCCCCCTTCAGCTTCATCCAACGGTGTTTGTACGTAAATGGTCATCCCTG
TGGTATATCATGGCAGCGCGTGCGGGCTACATAATATGTAGACCAATATTGAGTGAACGA
ATCAATCAACAAGTTGAGCAAGAGGAAGCAAAACTTACGATCTCGTCCTCTGTCGTCGGC
TGACGAACCACAACAAAACTTGGTGATGCTGGTCTAGATAGCGTACCAACGATACGATAA
CGACCTCACATCGCCTTCTTGAATGATGTACATGTCGTAGGGAGCAATATCCTTTCGTGG
ATGAAATGATTCATGCATTTGCTGCCAGAACGTCTCCCATGTGCTCCTTCATACGAAATC
CGTGAATACGGCCAGACAGGCATGGCACAACAACCCATCCTACATGGTCGAGTAGCTCAC
CATCCTTCATACTCTAAAAATGACATAACATTCAAAAAGCCCAATGCCATTTGACCGAAC
ACCTGCCGAGCATGGTATCCGTCATGGAGGTCATCGACCGGGGGTGGGGGGGTGGAGACA
CAAATGGCTCCAGGCTGGACAACACCATCATAAAGGCGAGCAGGCGCGTCAGTGCTGGTT
GCAGACCTTGGGCAATGCCTAACGTATAACATCGGCGGTGGAGGTGAAGGGTGTGGATGC
AAAGTAAGGGGGGAAGGGGCACACTGAAAGGAAATTGGACTGGGAGGGTGAATTTGATGG
GTCGGGGGTGTCGGAGTGCTACGTGTGTGGTGTGTAGTCTCTCGCAAAGCCCCCACTCCC
TTATTTGCCTTTAACTTTTACGAGAAAAAAACACGTTCGGTTCGCTCCACTTTGGATGAC
TTCCATGGTCCGAACAGATGCGTGTAGTTTAGGGATCACCGTTGGAGATGCCCTTAGGGC
ATCTTCAATGCACGACCCCAAACACACGTCTGTTTTGTCCAGATTTTGCCCATTTCGGTA
GAGCAATGGGGTGGCGTCCGACCTTTTTCTCGATGCGTTGGCCATGGGCCCAACGCGCGG
ACGGATCTGATCCACGTATATAATTTTTTTACCGTGTTTTACTTTATTTCAACAACAACA
TTAGAATACATTCATCAATTCTTTGCTAGAAAAGCAAGACCAAAGAAAACAAGAACTACG
ATTAGACATTTTAAAATATATCCAACTTCTATAACTTCTCACACTAGTTGTACTAATATC
TTTTTTATGTCTTCATTGTTGATCTAAGGATTCTCGAGCTTGCACACTTCTTTCTTCTTT
AATTCTAAAGAAGTAGATGTTGATTCCCCTCTAGTCTCTTCTCTAGTCTCGTCTCTAGCC
TTAATTCTTCCAAGGAGTGCAGAGCATCTATCAAATTTCGTGCTAACAATAGATCGATGT
ATTTGGTTTCCAATATCAAAGCTTGCATTTGTTAGCCTACACACAAATTTGAGCAAACAT
TGCATTGAATCTAATGAACAACCGAATCAAAAGAAGCACATACCCTATCTTTTTTGCACT
TAAAGAACATCCATCCGGGATGTTCCAATGTGATAGAAATGCGATGCATGGTGTGCAGCG
AGCAGTTGTCGCACTTTATGAATGGTAGCAGTGAGCCGCCGAGCCAGCGCCGAGCCCGGG
TGACAGTCGGGCGTGTATTTGCCAGCGATACGCCGAGAGGATATATCCTAACAGCTAGAG
GCGGATTCAATATCTGCATGCAGCGCAGAGGCATTATCGGGGCTGTGCGGTCGAGTACTC
GGCCATTCCATGGCAAGCGACCGGATGCGCCAAATCCGGCGCCCGGGTGTGCCAATCCCG
CCAACATAGATCTAGCGAATAACCGCCGACATAGTGACAAGAGAGGCACAAATCAAGCGG
TCGTGTTGTCGTCGGTCGGTCTGCACAACGAGGCGGTCGAGAAATTTAGCGGCGACGGCT
ATAGTTGGGGTCAGGAGATGAGGGCGGCGGGAAGGGATGGGAGGTGGAGAAGAAAAAGAA
ACAACGGTGTTCTTGACGGACTAGCCAGGGGAGGATAAGGACACGAGTCGCGTCCGTCTG
CGCGTGTCCATTTTGATTCAAACACAATCCAAATTTAAACAAGAGTCGGATCAAAAATGG
ACAAAAAACGAACAAATGTCCATTTACTGCCGAGCATTGGGCCTTTGTCTTCATCTCTAC
TATTAAAGGGGATCTGCCGTCGTCGTGATGGTTCAACCTCGTTCGACCCCCTCCTGTCGC
TAGATATGCATACATCCTTCCACCGCGTTTTTTAATCCCTCCAAAAACCAGAGGCAAGTA
AACAAGAAAACCAAACGGTTCAATCAACCTCTTCCTTCCACCACAAACCAGCCCATGTAC
TTGTCCAAAGAAGAGCAATGCTACATATACGCAAAGTTACGTTTAGTTTTACGTAAATGG
CCATTTGGCAATCTATGATTGGAAGTAGGGGGGGGCACCTCGCTGCAGTTCAGGGGGCCG
AGAGAATGGATGAAGGAAGGTTACGTAACACTGCACATAGTTTTTCCTAGATGTAGTATT
ATTGCCCAAAGAATAAGCAAAAGAAAAGAGAAAGCAACCACGATCACACGACCAACCCAC
AAACAGACGTCACACATGGCCACAACCCCATCTTTCCCAATCCCTCGCTCCTAGTTCGTT
CCCTCCCGAGAAATAATCGCCGCTCCAGAAGGCTGCCACCAGATCCTCCGATCCCTCGCC
CCAGATGGGTAGTACGTAAGCTTTTCCGCCGTCGGGGAGGGTGGGGAACTGGGGACGAGC
ATCCGGGGCGGATAGAGAGATGATGGCTGCCAATGGTGCTACATCGGTGTCGTATGGATT
GGGCCTCCGGGATGCCCTCGGGCCTAGGTAAACCGGGTTCTTCGGGGGCATGAAAGCACA
ACCTGACGATACTCAAGCTCCTGAGAACCTCCTCGCAGCCATCCGAGAAAATCTGCTTGC
CTCCTTGCTGGGTGGGATTGATATTGCCATTGCAACGCTTATTGTTGTGATACTAGCCAT
ATAAGGATTTTTAACCAGATGTCCTCTGGTTGGCTCTCGTGTGTAATTAGTACTTGCAAA
TATGTAGTGCAAATAGGATAACACTCCAATATTGTGTGCATCTGATGGGTGACGTGGCTC
AGCCCAGCGGCTCTAGAGATCCTCATGATTTGTCCCGAGATTCCAGGTTATAGTTGGAAC
ATCTTATTTCTGATTATGATTTCTTCTCATTGGGACTATTACTCCTGATGCTACAACTGA
AACTTAGAAATTGTAACCATCCATGGCCAACAGTGTTAGCTATTTGTGTATCTGCATTAG
ATACACCGCTACATGTTTACTGTTTATTGTTGGTCTTGAGCACTTCATGTAAAATGAAAT
TGAACAAACTCTTTTTTTCCGTCTGGGAAACTACTATTATGAAACTCTGGATATGCAATA
TAGTAGGTTCTAGAACTGCAGTCTGCATCTCATACATTATTGCATATATATGATAAAAGA
CAACTCCTACTGGACTCGTCTCATTAGTGATAAAGAAGCATTCATCATCTTTCAGGAAGT
GAATCCCTAAAACCATATCAATCAATCTCCCGGTCGAATGTACGATGCTTTGTTTTCTTT
GAGAGGATATCTTTTTGAATGATAATGATTTTTCAGCCATATGGTTTGATCAGGTGTAGT
GAGGCAAGCCAATACCTAAAGCTTGATATTTATTCTTGGAATGGTGTTTGATTTGTAGGT
AATTGTTTATATGTTGGATCGTGTGCAGGACAAGGAACAGGTCAATTTTTCTTTACAACC
TGCCTTCTTCTGAAAGGGATGATTTGTGTTCACTTTATGGCTTGTTGCCGGATAATGCAG
GGGCACATGTGACCGATGCCTTCTATGATCCAACAATGTATCAAAGATTTTTTGGCAAGA
TAGTTAGTGGAGATCCTTTTCTGAATCACTTATACTGGAGCAGCCTACATATCCAATATT
ATGCTGTTTTGTTTTTTGTGTACTAACAAATTAGAATGAAAATTCCTCCATGGCAAGCAT
GCATTCGTTGAATATTAATTTTAACCAATAATTTCTAGCATATATTTTTGAAAATACAAC
AGCCAAAACAATTCTGAAGGTTACATGGTTTGTTGAGGCACATATCCTTAATATTGAATT
GTCAATGGGAGCTTCCTCACACTATAGTATTTTTAACTAGGATATCTTTTTTGTTCCCTT
ACCAACTGAACATAGGTTCATATATTGCTAGGAAATAAAGATGCAGCTAGAAAACCAAGA
AACAAATATGGGTTGCTGAGATATCGTGACACATATATTGCTTCTGTATTTTCTCCAAAT
AGTTTCATGATTTTAATGTATGCCCATTTCTGCCAGTGCCCTTCTATCCATATACCTGAA
TCTAAATGTTAGATGAAATGATAGTGGTGGTGCCTAGTAACTAACACCGATGCATGAAGT
TACTTGATAAAAACATAAATAGGTGTGCAATCCGTCCCCGTATCATGTCCATGCTGATTC
CAGCTTGGAAACGGGTACATCAAAATTCACAGTATCCATGCATATCTCTTCTAAATCCAG
TGACATTAAACGGTTTGGGCTTGTCCCTATAGTGGGATGTCAGGATATATCCTTCCCATA
GTTCGCAATACTTATTGTCGACATGACTGTTAATATTACAGGTTTCTATTGTTTCTAGGA
GCTGCAAGGCGGTGGTCATTCTGAAATGTCTAGGATGTAGATTGTAAAGAGGCAATACCT
GAGAGTGTTTCCATAATTCATTTTGGCATCACCATGTATTCTGCAAGCTGGTATCTGCAT
GTAGGACTGTAACTTGAAGATGTGTACTCGCTTTTTGCCTTGGTCAGGCTTACATTTTTG
TCCCTATGACTCAAGATTGTTATAGTGGCCATCTATAGATAAGAATGCAAATTGAATTTG
TTGTACATGAAGGTGAAGCTAATGTTTTTCTTGCTTTAACAATGCGTCATCTAGCATTCT
ATTTATTTTGTATTCATTAGAAAATTTAGATGACACATTTTTTTTTCTGATCGTTATCCT
ACTGGACCAAATTATCTCGTCACTGCTCCAAAATTCAGAACTTGTGATATGACATCAAAT
TGGAAAATGATTAGCAAATTCATGATCTCTTTTTGCCTTGTCTTAATTGGCAACAAAACA
TTTGTACATTTATTATTGATATATTATGATCGTGATGCTGTGCATAGGTTCATCCTTCCA
GTTTAAGCAAAAATAGATTCCTCTAGATGTATAAGTCTATTCGATGATAAAAATGTGAGA
TGACGAGGGTAGTGAAGCATAATTGTTAGATTAAAATGTGAAGCCTGTGGGTGTGGTGTC
ATGGTCGTTGAATGTCGCAGTGTCATTCTTGTTATTGCATAACCCTCATCTCATTGAATT
GTATTTATTTTTCATTATATTATTGATGCATCAGTGCGTTGCTAATTGCTGCCAAGTGAC
ATCTATAGTGCCAAAAGGCACTTGAAGTTTGAGAAACGAAGCAAATAAAGTTGAGGCAAA
GAAGAGACACGTCAGAGAGAAACTAGGACATGCACAACTGAATGGGGATATATAGGATGC
AAGAAAAAAATTAGGACATGCACCACATGCTGGAGATACATAGGATATAATGAATAATTG
CATGCTATAGCGGAGAGACGTGGAGGGGTGCCGAGCCAAGTGATGAGCTCATAGGAGATG
TGGAAGAAAAATGAGGATTTGCAACCAACAATAATATGGCATGATTTAAGCTTCATCTGC
ATGCACGGCAAAATGTAAACAACAAATTAATTATATATTTTATTATCCGTAGCAACGCCG
GGCATTTAACTTGTTTATTCTAAACTAAACGGAGGCAGCCGACCAAACGAGCTACGGTCG
TCCGAAATGGTCATCAGGCATAGGCTCCCTCCCCTCCCCTCCCCTCCCCTCTCCTCTCGC
TTGCAATTGCAAGTCATCGCCAATTCGCCATGAGTCCTGTATGTACGCGCCGCAAAGAAA
GCGATGTGACGAGGAGGAATAGCTTTCTAGAACAGTATGGTCCAGTGAACAGACAGACGT
ACGGGCTACGGCACTGGCCCGTCCTTGCACCAACCACCACCACTTTACCTATTTATTTAA
AATTTGAACTAAAACTAGGACTAGTATTTTGAAATGGAGTGAGTAGTTTTCTTCCCGAAA
GAAGCAGCACTTGGCCAAATTTACCACAGGCACAGCACCAATTATTACTGTACTTCACTG
TTCATCTTTATCTTCACTTACACGAACACGACACCAAACACGGCGTGTCTCATCTCACAC
TAATGTATTAATTTTTTTATTACTTCACTGTTCATCTTATCTTCACTAACACGAACACGA
CACCAAACACGGCGTGCCTCACCTCACACTGATGTAATGTAATACAACAAGCATGTCACA
TCTCAGGATTAAATATTAGTCTACAGTTTTGTTTATCTTCATAGAGATCACTCGCACCTT
CGCTGTTATCATCTTCTCATCTTTCATCTTCCATCTTTCATCAGGAGTTCTCGGTCACGT
CTCATGACATCTTCTTCGCTTTCTTGTCCGCCCACTCCTTGCGCTTGGCGTCAATCAGCT
TCTGAACATTGGCATGAAAGCCAGGATACGGTTCGTAGGCAGCAAACTTGTGAAGAATCT
GAAGCAAACGGCAAGATTGGCATGACTTGTAAGGCAATCTCTTGTCGGATCATCGGAGTG
ATCATGCTGCAGAATGCTTACCTCTAGAAGCACGAAATATGGGGCCATCAGCAAAGCCTG
GACGAGATTGTCAACTAGAGCAGGTGCCCGCTTCTACAATCAGAGTAAGTGTCAAGTATT
AATAATCCTTGGGCAAGAGCTTTCCATAGCTAGTGGTTAACCTAATACCGATAGCGCGAT
ATCATAAGAGACTTGCCTCAAAAACTCCATGGCCAACGAATTGCATAGTCCAACAGAACA
GCTGAGCTACCAATACCACCTGCAAGAAAACAAAGAATTTATGCTTGATCAATTCATGTT
TAGTGAACTTCTTGTTTATTTAGCTACAAAGCATCTTGAACAGCAGAATCTATGCATCAT
CCTAAAAGCAAACGCTGTCAGAATCAAAATTTCAGAGGTTAAGAAAAAAGAATGAATCAA
AATTTCAGAAGTTCAGAAAAGAGATTGAATCAAAATTTCAGAAGTCAAAACCAAATCTCG
AACACCTGCAATCTAGCTTTCCAAATTTAAGGTCCAGTGACCTAGGTCCACTGAGACAGA
GATCAAAAGAACCCTGAATTTTGTAAATGCGGGAGAACTACATAAGCCGAACACCATGGA
GCAAAAAACATGCCAAGACAACTGACGCCTTCAATTGATCAATACCATGTGCAGTGACAG
CAATTAGGAGTAGATAGGGTGCAGCGAAGTACGTTAGACATGATCGGAACCCTTCTGTCT
AAACGAAAGTCAAGCTTTGGTTACTCCATATCCACTTTTCACAATAATTATCCCCGATGC
TGTTCTACGAAGATGACCACAAATTCTCAAAATCCCTCCCCTAGTAGAGAAATTCAGCGC
AAAACAACTAGTATTTCTTCTCATAGCCTATCAATAATACACCAAATCAGAGACGGATGG
ATACTGAACACATAGAAATCACTAGAGAAGGGTCAATCAAGGGAAGAAGCCAAGAGTGGC
GAGCGGGGCTGTGTGATGTTGTAGTAGTAATAACCTTCCATCCGAGGGAGAAGCCGAGGC
GGGCGGCGAGGGCGGAGCTGGCGCCCCAGCAGAGGAGGCAGAGGACGGCGGCGAGGGCGC
CGGAGCGGCGGTCGAGGGAGACGTAGAAGGCCCCGTAGACGGCGGTGAAGACCGCGGCGG
CGCGCGGGAACGGGGCGGTGAGGTGGAGGAGCAGGAGGGCGGTGAGGAAGATGGGCCAGA
CGAAGAGCGCGTGGATGAAGACGTTGACCGGGTTGCTGTGGTACGCGCCGTAGAAGGCGA
AGTGCCGCTCCAGGTTGAGGAACC