Contig Data
morexGenes
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Map Locations of contig_39579 (6172 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39579

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_55016 3 1003 bp AK354669 Available Available None
MLOC_55017 1 1125 bp MLOC_55017.1 Available Available None





CDS Structure of MLOC_55016






CDS Structure of MLOC_55017






Contig Sequence (6172 bp)

>contig_39579 6172 assembly3_WGSMorex_rbca.fasta
GGGTCCCCCGTGGCCCCCCCCCCCCCCCCCCCCCCCCGGCGGGCGCGCGCGCGTCTCTCG
TCCTGGCGCTCCGCACGAAACAGTAAGTGCAGGGGCTTCTCATCGCTGCTTCTTTTGGGT
AGACATAGGCAGCAATAGATCCGTACCGCCGAACGTGTTCTGTTGCAGGTTGCGTGTGTG
ATAGTGTGCCGGTTTCTCTCTTTTTTTTAGGGAATGTGCCGGTTTCTCTAGCGAGACTGT
GGTTGTGAGAGGCCACTGTTGTTTTTCGGGGGCTGCTTTATGAAACACACACTACATGTT
CACTCCCAACAATGTTAAACTAGAAATAATTGCTCATGGTGTCACAAAGCGTACAACTTC
ATTCGGTATGTAGTTGTAATCCTGACAATACTATGCACGTCAGTTATTAGTATAAGAAAT
ATAGGAGTATATAGTTGCTGACATCGACCACCTATATTATCCCCAACGTGCTGCTACCTT
TGATGTATTTAGTAACTGTTTTTCTCTTTACCTTTTTGTCCAGAAATGATTCTCTGTACC
TGTATTATGTAGAATTAAGTTTGTGCACCGCGAAGTAGACTCTTGGTGCTATGTGTATTC
ATTTGTTTTGACTTGAAACTAATGCCCGTCTTTGACATCAGGTACTGAAATATCAGAGTT
TCAAATTGACCAGAAATCTGCTTAATGAAGGCATAATTGGGATTTTGTCGGGCCAAAGGT
TCATAATCTGTAGTACACATACAGATTCCACACATATGGCTAGCCAAATCTCTGGTACCA
TAACATCTAGTGGGGTGTGCTATAATGATAAACACAGAATGCCATGTAAGCTGAAAGGAC
TACATTGTGTAGCATCGAATTGTTTACCACAAGAGGTAGAGGTAAGGAAGTGGATGAATG
GATATCATATCATCCGGTCCTATCCAAACGATAGACATCGGAAAACGAATGCGAAGTCCA
ATGGTTACCTGCTCCAACAAGGTCTGAATCTTCGGTGCCTTTCTTATGGTTCTCGTAGTA
GCAGTGAAACTAAAGAGTGCACTAGTCCTGAAGATGGCAATAATCCTTACAGGTAAATTT
AGAACAGCAATTACTCCCCCAACACACACACACACGCACACAAACGAATAGTCCATCAGA
TTCCATGTCCCTTTGTTAGCATGAAAAAATATATAATATTGAATACTTTGTCCGTATTTT
GTTTCATTTACGCTGAACTCATTTAATACATATTATCGTAAAACTAACACCTGCTATCAT
AATGCTTCGTCAAATATTTTTGACTTGTAATATTAAACTCAGCCTGCTGAAGACATAAAA
ACAATTCCATTGTGAAGAAAAGACTTCCTCTAGTTTTATATAGTAGTTCTCATGATTTTC
ACATATCTAGTGTCTTCCAACATAAATTGAAGTGTTGTGCCAGAATTCTAAAATCATATA
TGGTAAACTGCACATGGTCATTAAGCAGATATAATTCACCATTTTTATTTCCATATTCTT
AATCTTCTGTTGCAGGGGTTTTGATGAGCATCCAAGAGGAATGTCACATTTTTCAGATAG
TCAAGCTGCAGCTCAGAAAAAAACACTCTATTCTACTCAAGGGCTGTCTAAAGCGTGCGA
ATTTGTCTATAATGATGCAAAGTTTGTGAATGAAAGAGCTCAGAGTGATATTCTTTTGCT
TTCACGGTATTCTTGTTCCCTGTGCATCATTGATATTCACTCACGTAATTGTCTTGTCGG
TAGAAACAATGTATTTATTTGTATTGCTATTCTGAATTTTGATATTTGAAATCCTTTCTC
TCAGTGGAATCACAAGGTTGAACAAACGTGCATCTAAGGATGTTGCTGTATTAGGTTTGG
GGTTTCTCAAGCTTGATGGTACATGCTCTTTCACATAACAAGCTATAAGATTTTCCTTCC
ATAGGATTTAATTCCTCATCTAAATTTAAGATTCCCTGAAAGCTCGTGCAAGGAAGGACA
CCCAAAAGATTGACAACAGTGTGAAGGAACGGGCAGCCCACCTGACAAATTTTGCTAGAG
TATGTACTAGATCTGTTCGTATGGAATGTTTCATATGCTTTCTATGTATTATTGGTTTCG
TTATACTTCTAATACTTTAATTTGACCTCTGTACATAATCAGATATTGAAGGAGCGAGCT
CATTCGGACTTGAAGAAAGCAGCAGATCAACATTGGAGTGATGGAGCTTTGGAGGTAGAT
CTATACAAGTTCTTTCTTCACTCATTTTGTAGGAAGCATTAATAGATTTAAGTAACAAAT
ATTTCTCATTCATACTGTCGAGAAAGCTGCACCCATGTCTATGTCATTGGAGTACCCATT
TAAATTGTTTAATAACCATGCTAATATGCAATTAGTATGTTACTGTTTAATCCAGGGTTT
CATGCTGATCTAATACAACAGTTATTTGCAACCCAGGCAGATCTGCGACGAGCTGACATG
GTTGTTCGACGACGTGCCATGGAGGATGCTTTCATGGCTTTAAAGGTAGCTTAATTAAGT
GTCTATATAGCTCTAATGTCTTGAAATTCTGTGGGTTTCATCAGACAGTGACGTTTAATA
TCAGAATAGTTGGGTAAATCCACCGGCGCCCACTGGAACATCCTGGCACTTGCTAATTTT
CCTCATGAATCATTATCAGAGGTACTAATGACAGTATATAATGAAAAATCACAATTAGCT
AATGCAACATCAGATGAGATATCTAACATAGTTACAACTTACAAGTTAAATAAAGTGTAA
CTGGCAACGGATTATTATATACTAAGCCTGCATTGAGGATAAAAAATTAGAATGAAATAA
CACTAAATCAGTTATCTTTAGTTTTGCAAACAGGACGTATAATTTCTGGGCCTTTCCTTA
TGCAATCTTGCAGCTTTTACTGAATCAATTAATATGGCATTCTAACGGTATCTTACTCTT
GAGGGAATAACTAAAATCATACCTGGGGTCCCTCCCAAGTCTTACATAGCAATCCACGTG
GCCGCTCAACAAAAACAAAAGCAGTCAACACAAGCCCGGGAGGCCAATGAAAGTCCAAGT
AAACTACCGTGGGTCTAGACAAGCTACCCTGGTCAGCGAAAGTCAACGAAAGTCTTTATG
GCCGTTAAGTCAAAGGAAGTAGAGCACATAAACAAACAAGTCAAAGATGAAGGCAAAAGA
CCAAAGAAGCCCAAAGCCCAAGCAAGAAATCCTTCATATGGTGGACGGAATCTTCCTTCC
ATGGGCCACAACTCCCCTCCTAGCCCAACTAGGAGCCCATGGACTCATGGACGAAAGATT
ACATGGTTCTACCCTCGCACCTCTGCTTTTCAAGGGTAGCATTGGTCATTTATCAAGGAA
TCATAGGCTATATAACCCCCGCCCCCTCCACCCCGGGTATGTAAATCATTCACTCCCACT
TGAATAAACTCAATACACTCTCCCACCTTCCTAGAGCCCGACTTGACCAAAGGACAGGAA
TCAGAGTCTGAGGGACCTAGTAAGGCTTGTGCTATTGTGAGTTGTGGTACTTTGGAGACA
ACAACACTCTTAAGTGTTCCATGCGTCGAGCACCACTCTCGAGGACTTCATCGTAGGACG
CAGATCGCGCTCCAACAGTGCCATGAATGGTTGGCATTGGGCACCAGTGCGAACCCTACT
GGTGCACGCAATTTTGATCGCCAGGAAGTCAATCGGAGAGGTGGGGATAATGGGAACCTT
TCCCTTCCCACGACCATTTGACCTAGAACCGCAGATATTTTCGATAAAGGGAATATATTA
ATATCGCGAAGATACCAATTACACCCAGCCTCTCCAACAACGCAATACCCTAATGGCATT
ACGGATGCACACAACCAAAAAAAGAAAGAAAAAAAGCTAAAAAAGAAAGGCCCCGCTATA
GAGTTTCAGTACTTTGCACGGCGAGGAACTCTTTCTCGTACGTCGACAATTGCTGATTGT
GAACGCCTAGAGCTTTGTTGAAGAAGGCGATGGGGTGGCCGTCCTGGATCAACACCGCGC
CCACGCCGGTGTCGCAGGCGTCCGTCTCAATGGCGAAGGGCTTGTCAAAGCTGGGCAGAG
CCAACACTGGAGTGGTCGTCATCGCCGTCTTGAGCATGTCGAACACAGCCCGTGCTTGCT
CATTCCACGCAAAGCCTTTCTTCGTGAGCAGCTGCGTGAGGGGCTTGGCGGTGATGCCAT
AGCGAGGTACGAACTTCCTGTAATAGCCTGTCAGGCCAAGGAATCCTCGGAGCTCGGTGG
CATTTGTCGGCGACGGCCATTGTTCCATGGCATGCGTCTTCTCCTTGTCCGTGGCCACGC
CCTCCTTGGAGATCACATGTCTGAGGTAGACGATGTGGTCGCACGCGAAGCTGCACTTCG
ACTCCTTGACGAACATCTGGTGCGCACGAAGAAGCTCGAAGATGATGCGCAGATGCTCGA
GGTGTTCCTCCATTGTTTCACTCAACACGAGAATGTCATCCAGAAAAATGATAATGAATT
TGCGCACATGCTTACTGAATATGGCGTTCATGAGATATTGGAACGTCGCCGGCGCGTTGG
TGAGGCCGAATGGCATGACCTGGAATTGGAAGTGGTCGTGGTGCGTCTTGAACGCTGCCT
TGGATTCATCCTCTTCGCATATGCGTATCTGGTGGTTCCCTACGCGGAGGTCCAGTTTAG
AGAACAGGCCGCGCCAACCAGTTTGTCCAGGAGTTCGTCGACGATGGGTAGGGGAAACTT
GTTCTTGATGGTGGCGTCGTTTAGGCGACGGTAGTCAACGCGGAAGCGCCACGTCCCGTC
CTTCTTCTTAACGAGCAACACCGTGTCGGCGTAAGGTCTGACGCTGTGTGTGATCACCCC
GGCGTCCAGCATCTCCTTGACCTGGCGCTCGATCTCGTCCTTCTGGAGGGGCGAGTAGCG
GTACGGCCGTGTGTTGGCGGGAACCGCACCCTCCACCAGAGTGACCGCGTGATCATACCG
GCAATGGGGAGGAAGGCCGCACGGCGTCGCGATGTCGGCGAATTTGTCGAGCAGGTCGGT
GAGTGGAGTACTGCTGACGCCCTTGCGTGCCGGAGGAGGGGGCCGGCCACCAGTATCCAC
CATGGGCATGGCCCAAACATCGTTGCCCGTGATCATCTTGTTGAGCCCCTAGGTGTCATG
GGCTTAAGCGTCGGGGTTGCTGCCGTTTGTACGCCGCGGAGGGTGACCACCTCCTCGGTG
TGCTGGAACTTGACCCATTTGTCTTGCTAGTGGCAAGTCATGGGACTGTGCTGGGCTAGC
CAGTCCATCCCCAGGATGCCATCGTACGCGCCAATCTCCAGCTCGCGCATCGGTGTGGAG
AAGGTGTGTCCCTCCATCCACCATTTGAGCTCGGGCACTATGCGATTGCAAGTGAGCCGA
TCTCCATCTCCCTTCTTCCCGTCTCACAACATGTGGTGGTGATGACGAGCGTGTCGTGGT
GAGGAAGTCCGAAACTGAGCCGTCATTGGTGGGCGAAGCCACGAGGCCAGCTGCCGAGGC
ATCGGGCAAGGCGGCGGTCAAGGGCGGGCCAGCGGCCCCACCAAAAGAGGTGGGCGAGAC
CCCAACCACGGGGTCCATAGTCGCGTCTTGAGAAAATGCGAGCGAGGAAGGGCCCTTGGC
TAGCGGCGGTGTCGGCGTGCCATGTGTCAAATGAGCGGAAAGCCAAGACGGACTACCTCG
CCAGGAGCGAGAAGCGTCGGGTAACCCCAATGATGATGAAGCAGAGGCTGCAGCCGGAGG
TAGCTGGTGAAACGGAAAAACTCTCTCGTCAAAGTAAACGTGCCTCGAGGTACCTGGTGA
GACGGGATCGTAGCACCGGTAACCTTTAGTGTTGGAGGGGTAACCGAGAAAGGTGCACGC
AAGCAAGCTGGGGCTAGTTTGTGAGGGGTGGTGGAAGCTATACTGGGATAACAGAGACAC
CCAAATATACGGAGGTCATCATAGGATGGTGATAGAGGGAAAGGTGTCCCGTCTTTCGAT
GAGATNNNNNNNNNNNNNNNNNNTGGAGTAGACTTTGACGATCCGAGTACGAACGTGCGA
GGACGTCGCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCAACCTGACCACGAAGGTCTATTTCGTGCACGCAAACGAAGAACAAG