morexGenes - Barley RNA-seq Database

Contig contig_39573
Source Contig contig_39573
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39573 (6435 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39573

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_55014	2	190 bp	AK363377	Available	Available	None
MLOC_55015	2	1870 bp	MLOC_55015.1	Available	Available	LOC_Os07g48460.1, FRAME:-1, EVALUE:0.0, 13107.m05189 protein stress responsive protein, putative, expressed
CDS Structure of MLOC_55014

CDS Structure of MLOC_55015

Contig Sequence (6435 bp)

>contig_39573 6435 assembly3_WGSMorex_rbca.fasta
TTAATTGTTGTCTTGCTCAGTACGCACGACTACCATCTTTGCAATTGTTAGGCTCACCTT
CATATTTCACATTATTGCCTAAAATTGCTAAGAAACAATTAAAATTTGTAATTATACCTA
TTCACCCCCTCTAGGTCCATCTCGATCCTTTCAGCGTCCACACGTTATGGCGTCACTGTA
GGTGTGGCTGTGGGGTTCCTGGTGTGTGGTGGTGGACGATTTCCGACAGTGTGCAATTAT
TGGAGGTTGACTTGGTCCGCATCGTCGCAAGCCTTTGTGTTATGGCCCACTTGCATGTTC
CCTGTGCGTGGGGTCGGTCCGAGTTTCGTGCCTGGGGCCTTCCTCTGTCATCTTCGGATC
GGCCCTGAGTACGACAGATATGGCGGCGCTCAACTGTGCTTGGCGCTGGCCGTTGATTGT
CTCTGGGTTGTATCCCTCCTGGTCGACCGGGACTGGCTTCGGGATGCGGGTGTGTGTGCT
CCCTACTGTGGGGTGCCGATACCGACCCGAGGCTGATTTCGGGCTAGGGGGAAAGACATC
GTCTTTCTCTTCTACTACCGTGGTTAGGTGGTCGTGATGTGGAAGGCTGGAGGTGCCTTG
GGACTCAGATGCCAAGGCAGCGGTCCTGGATGGCAGGATCCATAGTTGGCTTCCCGGCAG
GCCCCGTGGTGGCGGTGCTGGACTCGGCAGCGGTGTCGCATCGTGTCGTCACACTCTTGT
TTATATCAAGGGTGCGAGGCGCCCTTCATCGTACCTTGTCTAGGTGTTACGTTTGTTCTG
ATTTCTTGTTTATCCGATGCTTTGTAAGGAGGGCCCCCTATCATATTGTATTGTTCGGCC
GTGTATTTTGTGAAGTTGTTGTTTTATATATTAAGCAGGGCGGAAGCCTGTTTGAAGAGG
TCATGGGAGATTTCAACACACGTTGAATTATATCCGTCTAGTGGTTTTTTTTTTTTTTTT
GACGTGTAGTGGCTTCATTGTTTTCTACGTTGAACGAAACACTCCATCCTAAACTCCTCC
TTGAATTGACAGCACGAGAATAACACGGAGTGATGCTTGGGCGTTAAGAATTAGACCGAT
ATGTATTTAAGCAATGTGTTGGGCGGCATGACCTGGCAATCTAGAAGCTCTTTTAAAAAA
GAGGGAATCTAGAAGTTCTTCAGTCTCACCGAGTGTCAATGTCATCAATTCTGTAATATA
AACCTCAATTTCTTCGTAGATTACGTATTAGGTAGCTGGTGTGACCACAAGTCCACAACT
GGCAACTTGTGAGCCCCGGTGAAAAAACAGATCAATAATGCAGGACAGTGGCTTATGCAG
GCATATATTTGTTCATTACAAACATAAATGTACATTCATACATGTTATTCTCTCGAAAAC
TGTCAGGTGCCAACGAACTAAACTCTCTCCTTGACAGACAGGAGGAGACACATTCGCATG
GATCAACGTAGCGATCCACACCAAACTCAGAAGATAGCTAGCTAGACCGCCCTGCACCTG
ATCGACATCCTGAACTTGTTCTCAGACAAAGAAGCGATCCGGTCTCGATCAAGTAAGAAG
AGATCATCGCTGCAGCCTAGGTTTATTCTCTCTACTGAACGCGCAGAAGTGCAGAACGGA
CACGACATGAAGCGGATGACATCAAGGTACAGTCTCTGCATGAGAAAGGCAAGCAAGTAA
TGGTGATCAGTGGACAGATTAAGTGCGGTGAAGGGTGAGTGCAAGGCCCTGAAGGTTGAG
AGTAGCTTACACCACGGGACGATCTTCCAGCGCTGGTTGTCGCCCTTGCACCACTCCCAG
AGCACGACCTCGGTGCCGTCGTGGACGCCGCCGTGGTCCTTGTCGCCGTGGAGCGCGTCG
AAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAACCCCTTGCCCACGTCCCTG
CTCTCCGTCCACAGCACCGACTCGTCCATGTACTCCGGGTTGTAACCCACAAGCTTCACC
TGCAGTCCACATCACATGTCAAGCACGGTTCACCTACGTGTTGCTGTAAACGTCTCAAAA
CGTACGAGAAAGGGGGTGGTGGAAAATAGTTTCACGTCGTGTGACGCCAACATGGAAATC
GCAAACGTAGATAGGCACGTGCCAACCACTGCATTGACCGGCCAACTTGAATTTAAGGTG
TATTACATGTGTTAACGTCACAGTCACAAGATGACAGACGCTATGTTCGTAGTCAGCAGT
ACTACAAATATAATCCAGGTTGCATGCATGGTGGTTTAGTTTTTGAGGCTTACAGGGTGG
CTCTGCCCGAGGGAGTGCTTGATGGCTTCGCCGGTGATCTTGTTCACCAGGGCGAACGCA
GGGTAGCCCTCCTCGTCCTTGATCTTGGTGCTGTACCTCATGTCCTTCACCCAGTGCTGC
ATTTCGTTTTGTCACGCACACACGCAAAATTAATTAACAGAGACGAAAGTCAGTAAGGTC
GCCATGGATTGATGGGCGTTGAGAAATTGCTGGTTCGGATGGAACAAGCTATGTATGTGC
ATTCATCCCTTTGGTTTTCACCTGGAACTCGTCCCTGGGGTTGGTGGGCGCGAGGCACAC
GGTGCCGTTCCTCACGGTGAGGCTGTAGTCCTCGCCGGCGCTGCACAGGACGCGCACGGT
GGACTCAGACGCCAGCGCGCGGTGCAGGTTGCCGTACCCGTACCCTGCGCCCGGCGGCGC
GTACGCCTCAGCGCCGTGGGCATGCGGCGGCGGCGGGTAGGCCTCCTCGCCGGCCGGCGG
GGTGCGGTACCCTCCTCCGTACGCAGGCGGAGACGCGTAGGGGTCCCGGCCGCCGGACGA
GCCTCCGCCGTAACCGTACCCGTACCCGTAGCCGCCACCGTCGGCGCCCCAGGGCAGGAT
CTTCCAGCTCTGGTTCTCGCCCTTGCAGAACTCCCAGAGGACGACGGCGGTGCCGTCGTG
CACCCCGCCGTGGGGCTTGTCGCCGTGGAGGGCGTCGAAGCTGAGGCTGAGGTTGTTGAC
CATGCGGATGCAGCGGAAGCCCTTGCCGACGTCGTTGCTCTCCGTCCACAGCACCGACTC
GTCCTCGAACGCCGGGTTGTAGGGGATGAGCTTGACGGGGTGGGACTGGCCGAGCGAGTG
CTTCACGGCCAGCCCCGTGGCCTTGTTCACCAGCGCGAACGCCGGGTGCCCCTCCGCGTC
GCTCACCCTCGTGCTCTGCCTCATGTCCTTGTACCAGTGCTGTACCCACACACACACACG
CACACGTGCAGAAGTGTCACTTCCACGTACGTACGTTCACTCGAATGAGAATCGTATGGC
TGGGTGTACGTGCCTGGTAGTCGTCGCGGGGGTTGGTCGGGGCGAGGACGACGGCGTCGT
GGCGGATGGTGAGGCAGTAGGCCTCGTCGGCGCGGCAGAAGATCTTGAACGTCGGCTCCG
CCTGCTGCGGCATCATCGGCAGCGACGCGGTCGGGGAGCCGGCGCCGGCCGGCGGCGGAG
GGGGCTGGTTGTGCTTCTTGTGCCCGAACATGATGACAGCGAGGACAGGGTGAACGACAA
CGGAGCGATCGGTGCGGTGAGAGTGCATGTGTGCTGCTGGCCGGGGTTTTATAGGGCTTG
GGAGCGCACGCCCAACGGGAGTTAACAAATGCGACCAAATTAGAGAAGGTGGAAGACGGA
TAGGTGAGGGTTGAACGGCGAGGCCTCCGTTAGGACCGAGGCGTGCCGGAGGACGAGAGC
CGGCCGGCCAGACGCGGCGTTGTTAATCGCGCGCCTCCGATGACTAGCTAGAGACGGCGT
GGTTTGTCATCCGCATCGTCGTGTCCGCAGCCGTGGGGCCGGCTGGTGATGGCATGCATG
CAGGTGCCCGCGCAGAGATTGTTTTGTTGGGAAGTGCCGTACGTCCTCATGGTCAAGGTG
GTGGCTGTGCTTTGGCGAACTACTCCAAACATGGACGTTCCTCGTGTCCGGATTTCGTTC
GTTTGAACATGACAATGAGACGGCGTCCGTTTTCTTGATGCGCTAGTCGTGAGTCAAACA
CGAGATCGCATCTCGTCCACATGTATACATTTCTAGGCCGTTTTATTTATTTCAACGACA
TTTTGGTACATTAGATTAAGTACAATAATATAGCCAGCTGCTGGCTATAAACCATCGTCA
TATCATCTATAGCTAATCTTATAGCCAACATGTACAACAGTTCATTGCAAATGTGTATTA
CTTTTTTTTATTATTATATGACACACCTTTCATACTCATAAAATGTTTAGGAACACGTGC
TAGAGCTGACTCTTAGCTAAGGACTCGCTTACCTTATTTCTCCCCTTCTCTTTCCTCCAA
CTAAATAAAAATATATTAATTTATTACTTATAGCCAGCTGATTCAGCTTTATTGTACTTG
TTCTTAAAAATACATTCATCAATCCTTTGCTAGAAAATCCCCCTTTTCGGTTCTCGAAAT
GGGGACTAGCAATTTTCTATCATTGGGACGGCTAAACTAGCAAGAATCCCCCTTTCCGGT
TCTCGAAAGGTTCTAACATTCCTAGAGCGTTTTTCTACTTTTGTGCTCTCTTTCAGGTGT
TTTCCCTACAATTGTTATTTTCCTTTGTTTTTTTGTTTTCAAGTTCACTAATATTTTTCT
AAATTTGGCAAATATTTTGTGAATTCTCAACATTTGTCAGCATTTTCTATATGCAAACAC
ATTTTTGAATTTCGCAAACATTTTTCAAATTCTTGGACATTTAGTTTTCCAATTCTTGTG
CATTCTTTGAATTTGCCAACATTTTGTAAATTTGATCTTACTTTTTGTATTCATAAATAT
TTTGTGAATAGGCAAGAATTTTTTGAATTACAAATATTGCCACAAATTAGGATACATATT
TACAACTTTTGAACTTTTTTGCACTCGCTCATAATTTATAAATGCATGTAAAAATTTCAA
ATTCATGAAGATATTTGTTTGAAACTGCGAACATTTTATGAATTCGTGAACATAGTTCTT
TAATTGGTCGATCTTTTTAGAAATTGTGAGCATTTTTAGTTTTCCAATTGTTTTACAGTC
CTAGTGTACTCGGTTTTTGAGGAAAAACGCATGCAAAAGCTGATAAAAATGAGCGGTCGC
GAGCAAAGAACTAGAAAACAACGTCCGATCCGAACGAAAGAACCAAAAGACCATGAAATG
GGTTTGTATTTGGGCGCTTCACCTACGCCTTTAAAGAAATGTAATTTTGTTTCTTCAAAT
GTGCAGATAGATTTTAAGTACGAGTTTTGTTATCTACAGAAAAACGTAAGTCGTTATTTT
AGCACCTGCTGGTTTTCTTGCTGGCTCGTGCAAGCTAGCGAGCTTGCAGCATCGAGTGGT
AAAGCCATTTCATTCGCTATTGCCTATTGGCCCCAACTGATCCAACTGATCGCAAAGCCA
CACGCCAGTACTGGTTGGGAAACTATCTCTACTATTAAAGCAGGATGTGCCGTCGTGATG
GTTCAACCTCAGCGATGGTTCGACCTCTCTCCCCCGGTAAGAGCTCTCTCCCACCAACTT
AAAGCAGGATGTGCCGTCTCGGAAGAGGCAGCAGATATCAAAGTATCAACTGTTATAAAC
CTGATATTTAAAATAGAACACCAACTTAGTCCCGCATTACTGAAATGTCTAGCTAATTAT
ATATGTTCAGGATTTCATAGAAAAGCTTCAGCACTTGCCACAGTCAAAGATGTTGGACTT
ATTTCAGAAGGATTACATTCATGCCGTCACCATAAGTATTTTAGTTATGCATTTCTAGCT
ACAAAGGAGATGCTAATGTGTAACTTTATAAGTATTGGATTTCTTTCAGGTTGGAGTTGG
GCTCATGGTCCTTCAACAGTTTGGTGGAGTGAACGCAATGTGCTTCTACGCCACTGAGAT
ATTTGTCTCGGTTGGTAATGAATTTTAGCAACCTGATGCCTTAACTTTCTCATGCTTACT
GCTTATAGTTACTGGACATATTTCTTACCATGTGTTACTTTTGGGTACTAACTATCCATG
ACATGAATCAGGTTTCTCGTCAGGGAACACGGGAATGCTCGCTATGGTTGCGGTTCAGGT
ATTTAATCATGGCTCTTATGCAATAGTTTTTGCCACTCAGTACTCACTGATTTTATGGTG
TTCTTGTAGATTCCGATGACGGCACTTGGGGTGCTTCTGATGGACAAGGCTGGAAGGAGG
CCACTTCTAATGGTAAAAAAAATACACAGGTTTTTAGAAAAAATGATGCACTTAGTAATG
GATGCTAAGGCAGTAATTTCCATTCTCCGTGCTGAGTGGTCGCCTGAGAGCTTAGTCCTG
CATTACTGAAATGTCTAGCTAATTATATATGTTCAGGATTTCACAGAAAAGCTTCAGCAC
TTGCCACAGTCAAAGATGTTGGACTTATTTCAGAAGGATTACATTCATGCCGTCACCGTA
AGTATTTTAGTTATG