Map Locations of contig_39553 (9632 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_39553

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54987 1 959 bp None Available Available None
MLOC_54986 1 1312 bp MLOC_54986.1 Available Available LOC_Os10g37170.1, FRAME:+1, EVALUE:2e-48, 13110.m03370 protein retrotransposon protein, putative, unclassified
MLOC_54988 2 1981 bp AK251055.1 Available Available None





CDS Structure of MLOC_54987






CDS Structure of MLOC_54986






CDS Structure of MLOC_54988






Contig Sequence (9632 bp)

>contig_39553 9632 assembly3_WGSMorex_rbca.fasta
GGGTGGGCGGTATCGGCGGTGAGTAGCCATGTAATTGGATTACACGGAAACGGATTACAG
CCCATGTGGTCCAAACACAAGTAACGTTTTCAAGTTACGCTGTAATCAGGTTACGGGCCA
AAATTGACGAACCAAACACCTCCTATGTGACACCCAAATCCTGTGTTTTTCCTATTACTA
CGTTTTCAAAATCCTGCAATCCAAAGAGGCCCTGCAAGAAACTTTGCTTCAAAGGGGAAG
TGGTGGAAACACATAAGAATAGTAAAGTTTCCTATGGTGGCACTATTCAGGCCTTTGGTT
CAAAGGAATGTAGCGAAGGGAAAATACAAAATAGAGGAAAATTTTCTTTGTTCTCAGTTT
CAGAGGAAAATCATAGGAATTTTCCAATGCACTTGGACCTCTTTCTCAAATTCCTACGCA
GAAAAAACGAGACTGAGATCCTTAGTGACATAATAACAGGCTAATTATACCTTTCCATGT
GCAACAATGGTTATTGAACTGGATTTCTAATGCATCACGTCTCCATTCAATGATTCTTGC
TGTTGCAATTTGGCACATTTGGGAGAATCGTAACATAAGAAATGGTGAAAAAATGCCTCA
TCCTTCATGTGTAGTGGGCAAGATCAAGGCTTATGTTGATTTCATCCTATTGTACAACTT
CAGGTCGACTACCTCCACTAGGCGTGAGCACCAGACAACAATCCCAAAGTGGTCTCTGCT
GCCGGCTGGGTCGGTCCTGGTTAATGTTGATGCTGCGATTTTTGCCCAGACCAAACGCAT
GGGAATTGGTGTTGTCATCTGCAACCATCTGGGTCTGGTGTTAGCTGCAAGTAGAAGATT
AGTTGATCATGTGGATAACCCAGAGCTGGGCAGAGCTATCGCTATGCGCCATGCTTTAAC
CTTCGCTGAAGAAACTGGCTTCCAGCAGATTATTGTAGCTTCTGATTGTGCTAGTTTGGT
AAGCAAGGTGAAAAGTGGGAAGAAGGATAGATCTCACATAGGCGCCATACTCTTTGATAT
TAAGAGAAGGGCTCCAAAGTTCATGTCATGTAATTTTACTCATGTTAGTCGTTCTTGTAA
TGAGGCAGCTCATGTTCTAGCAAAGTCAGCTGAACATGATGTAGGGCCCTGCTGGTTTAA
TGTGTCTCCTGATATTATCAGGGCCATTGTTTGTACTGAACAAATCTCTGAGTCAATATA
CGGAGCTGCCTTTTGTCTCAAAAGAAATTATACATTTCCATGTGGTTTGACTTTGATCTG
ACTCTGTTTATTAGGATTCCTGTGTTTTTCCTCAGGCCTCCTTCGGTTTGTAGGAATTCA
ACTCTGAAAAATTCCTATGTTTTCCAACCCTCTGTTTTACACACGTAATCCTATCCAATT
CCTGTGTTTTTTTCCTTTCTTGCATTTTAAGAAACCTGTTGAGAGGCCAAAGTCTGCAAA
TTCCTACGTTTTACACATGTATTCCTACCCAATTCCTGGTTTTTTTTTTCCTTTCCTGCG
TTTTAGAATCCTGTGAGCCAAAGGAGGAGTCTGCAAAATTCCTATGTTTTCCAATCCTCT
GGTTTACACATGCATTCATAATTAATTCCAGCGTTTTTAGGATCCTGTGAGCCAAAGGAG
GCCTAAGTCTGCAAAATTCCTATGTTTTCCTATCCTCTGGTTTACATGATGCACTAGATC
CACCTTCACTTAGTGGCTGCAAACGGCGCATGTGAATTGGATGGTGACGGGGCAGTTCTC
CCCAACAAGGACATGCTAGATGTAAACTTTAACTAGTAGACCTCTGAGAGTTTAGGAATG
TCTTTTAACAATCATTTGCATGGTTTGCATATGTTGTTGTGGTTGCTGATTTGCCGTAAT
TTTGTGCTCTCGCACTTTGGAGAAGCAATTGAGTTTGTGCAGACAATTTTTTGGGGGTTT
CTTCTGGTTGATGACTCACGAGAAGTGCATATCCAAGAGTTCAGTAAACAGGAGAGTGCA
ACTTGCGGTATGTCTATCAGGAATGGAAACTTAAATTTGGTAACAGGAAACAGAGTTTTC
CAGTCACGTGTTACTAGTAAATATATCGAGAGAACAATTATTGCTCTGAGCAGTCCATTT
TACAGTAATATCGAGTAAAATTTGTTGTTAAAATCACTACTGTGAAGCATCAATGCTATG
TGTATTGATATGCCAAGTTGTCAACCAGACCAAAAACTGAACTCAGTCAGGTATTTGATG
GTAATTTAATTCCAACAGCCAGAAAAATAAATAGCAGATATAAGTACATAAGCACTGAAT
AAACACATGCACCACTTACGATAGCAGGTGTTGTGTAACAATGAAGTGCCTAAACCACTG
AAGTGACAGATTGCAGCATCAGCAAATATTGACGGCTTATCTAACGTAGTGCATGGAGAC
TGCATAACATCATAGTTGTGGTGTTGAATGATTTGACTAATACAGTAAGATGTGTGGTGA
ATCTAGGAATAGTTCGCCCACAGGGGGGTGCGCGCACACTCACACACAGTGAAACTAGCA
ATAGTTTATCATAGCATATGAAAAAAGAACTCCACCTATCTGTTGATGATGTATTTGAAA
TGAGTGATGGAGAAGCACTAGAGAGCAAGCTGACCTGTTGGGTGACAGGATCAATGTCAA
ATACTTTTGTAGGGCTGCTCTCCACCCAGCTTTGTTTTTCCTCAAGTGTGAGTGTCTCCA
TGAGTTCTTGATTAATACGTATATCAGGCTCATACATGAAGGTCACAGTAGCAGCTGGAG
ACCATTTGGCATGGTCCTTTCCAATTCCCTTCCTGGCAATTGCTCGAAGACGCAGCTCTT
GCCCACGGCGCAGCTTTACAATTAATATGCCTCTGAAATAAGATATCATTATTTAAAGCT
CAATACAATAAGCATTAGTTAAACAAGAGTTAAGGGCAATTTTCAAACATTTATTAGCAA
GACCAAGATATGCAAAGGAAAGATGCCACTGAATCCATTAGACCAAAAGTTAACACATAC
TCCCTCCGTCCCNNAATAACTGTCTCAACTTTACACTAGGTCTAGTACAAAGTTGTACTA
AGCTTNNNNNNNNNNNNTTGGGACGGAGGGAGTATAATAAGGTAGCTTAACTTTATTGCG
ACAGCAGCAGAACATATCACTAGTGCATGCTCTGTGCATGTAGGAGAAGGTTTATAGTGT
TATTAATCCTTTGGACCTGGTTAATGTACATATCCATCTAACGTATATAATAACAAAATA
ATTAGGCAAAGATAGTTATAAGCAGAGTATGCTTGCATTTAGAAGCACATAGGAGATCTT
GATCCCCTTATTTATAGTTCTAGCATTAACCGGTCTCGATAGGATTAATAATTTCCCCTT
GAACTCCTTGCAGGTACAGTGCAGAACAGAAAAGAAGGAAGATTTGCTGAGTTGTAGGGG
AGGACCCACTTCCATCGATTTCTTGAAGGAAGGTTCCGGCTCCTTCGGCCCCTTCCTCTC
CCCTGTGCTAGCCGCCGCTGCCGCCATCCCCATCATCCGCCTGTCTAGTCTACTCTCAAT
GGAAGGTGGTTAGTAATTGGGGTTTGATGGGGAAGGAACGTTGTTGTTTGTGAGGTCTCG
ATCTTTATCCTATCAGTTCTGATAAGCCCAAGGAATTATCCTATCAGTTCTGATAAGCCA
AGGCCTAGGCAATAAAGGAAATAAATCTGACATAAGGCATTCCTTTGCCTTCTGAGAAGT
TGGGCATCTGTTTCATTTCAAGAAGATCCCCAAGTACGGCACTAGTCTTAGATCAGTGTC
AGATAGATATAGCCAAATGTCATAATCAAAGAGTTAAATGTGCATCCGACCTAGAGGTTA
TTCAATCAAACCATTAAGGGGTACAAAGTCTTATCTGCCTCCTAAAGATGCCACTGACGG
TAAGCCTGGTATACACATATGTGGTGCTGTCTCCACATAACATTAGTGTGTATAATTAGC
ATGAAGATCAACTAATAACCAAATGCTCAGTTTTACTTCCATTCATAACGCTCCATTATG
ATGGAATGACAGAAAAGGGCAAAGAAGTTTGTACCCAAAAAAAGCCTCTTTATTTTCTTT
AAAACTGCTTACAAAGGAAAATGATTTGGTCAACTTATTAAGGAGCGATACATGTGACAT
ACACAGTAGTGTTTCCCAACATAAAGTATTATTACAAGCTGCATGGGATATGGAAAATTG
AGTCATTTGTAGTGTTGTCCCACATAAGATTAGTGACATGCAAGATCAACTAATAACCAA
ATGGTCAGTACTTGCCTTCATAACGCCCCATTATGATGGAATGAAAGAAGAGGGAAAAGA
AGAATGTACAAAAGAGGCATCTTTCTTTTCTTTAACTAACTGCTTACAAAGGAAAATGAA
TTGGTTAACTTATTGTAGAAGAGAAGGAAAGATACATGTGACATATAGAGTGGTACTCCC
AACATAAGCATTACAATCTGTACGATGGAAAATGGAAAATTGAGCAGATTACAGGCAGAT
AAACTTACGGTATATGGATGAACACCGTAGAACAATGAGGTGATGAACACTAGGGTACGA
GTTATAATATAACAGCATGGCAAAAGGTGCGTACAACTTAGGCTTTACTGTGTAGCCATC
AAGCTCGTTTGTTTACGTTATTAAGAAGTAAAAGGAAATTGCATGGTAGCTTCTTTTCTA
TCTCTCTTTTACAACCTCATGTTGCTCCCTTCTTTTTCTAAAAGTGGTATCAAGGTCTAA
AGTAAATAATTTCTCTGGGCAAAGGATGCACAATAACGACCATGTCGTATGTACATAACC
CAGAAAGGTGTCTAGACAAGCATCGAATGTGCAAATCCAACAAGGATAAATAATTTATAA
GTTTCACTGGACACGAATTTTTGGAGGTTTTAACAAAAGCACTGAACATTACAATCGAAA
CAAGAGGTCAACGTATTTTATGCTTCCTGAACTACATACCATGAAAGATAGAGAACCTGA
TGTTGCAGTATATTTATATCTTCTCAGTGATTTCGACAAAAATACAGAATGTGATTTAAC
AGAACAACCATGTGTACTAAATGTCTAACTAACAAAGTGATCGAAGAGGCTTACACAACC
AATAAAGTTATTGAACTCTCTACATAAATGATCTATTCAAATGTTAGACTACATGACATT
ATCAATACTTCCACACTACTGGATTAGTATGACAAATTTCCAAATTTCAATGTTAGCAAG
AATATACCATCTTCAGAATTCAGAGATTGCAACGTTATTATTTATTACTAGGAAATGCTG
GTTTAGTTCAGATATAGTAGAAGGATACAAAATGAGTTGTTCATTGGAATCAACAATACA
AGATTGCTTTGGCTAAAGAAATCCATGCCTTCGTATTAATGCTGATCTCACTTGAAGATG
CTGTACAACGATGCTAATATAGTTTCACTTGAGTCATTGCAATGTTAAGGTAGTGAAAGC
ATAAGGTGGTGTGAGTGAGGACAACTAGCATTTTGGCATAGATAGAGTAAAATGCTGGTG
CCTTGGCCTCCGACTAAATTAACCTATAAGCAATTGTAGCACACATAGAGCTTTAATCTG
AAATTGAGACCTGGTTGAGCATGATTGAATTACATGCACTGCTAGACTCCTAGTAACAGA
ATGCTGATTTAAAATACAAGAATGAGCGCAGGGACAAGGCCATGAAAATGTAATTGTGAC
CTTTTGATACAAATTAACCATCGAATTAAAGCATCTACAGATACGGTGACGAGCATGAGG
TAGTTCAAGTAGTGCAGTCACAGGATTACATTTTTACACATCTACAGTACCTTCCAAAGA
AAGGAAAAACGCATTTAGAGGCAAGACAAATAGTTAGGGACACATAAACCATTTGGTACA
AAGCAGAATAAATAGTATGACAAACAAAACAAAAACACAACAAACTAGATAGAAATAGAG
CCAGATAGGTAAATTAGGAATTCATCAAACAGATAAGCTACTAGTAGAATGACTAACTAG
GGTTAGTTGGGTTCTGTAGATGAGGCAGAGGTCATCATTTCATCAATACTTGGGGATTTA
AGAGATAAAGAATAAATATTAACACAATGGTGGCGAAATGGAGAGCGCTGACTTGCCTGT
GGTCACCGGCAGCATCGGGCTCGTAGGCGTCGACATTGCCGAGGGCCTGCTGGTATTCCC
TTTGCTGGTCGACAGGGCAGACCTTGGGGTCGGTGGAGCGGAGGTCCTTGGTGGAGGTGA
CCTCGAGCGTCTGGCCGGAGTCGGTGGCGCGGGCAGCGAGGTGGAACTCGACGGAGCAGT
GCTCGCAGGAGCCGTCCCCGTCACAGGCGTCGCAGTCGCGGGAGAAGCGCATGGACATGG
CGCCGGAGGAGGTGAGCGGGATGAGGCCGAGGCGGTGCGCGAGGAACTCGTCGTTGAGGA
CGGAGGAGTTGCTCTCGATCTCGACGAGGTCGATGGCGACGGTGGGGACCTCGGCGATCA
TGACGCGACGGAGGGCGTTGGCCATGCTCGCGTCGGTGTCCTTGAGCTCGAACTTGGCGT
ACTCGTCCTTGAGCTCGCGGATCCGCACGCGCGGGAAGCGCTGGTACGAGGCGCCCGCCG
CAGAGCGCTCCATTCCGCCTGGCCGCCGGAGATGGGGTGGGTCGCCGCCGCAAGGGTTTT
GTTGGGTCGGGCGGCGGATTTGGGGGAAACGGAGCAAACTGAGGAGGAGAGTGGAGGACG
GGGCTTTTGTCCGCCTTTGCCTTGATTTCGCTTCCACCCCGTTCGGTGGTCAAGTTAAGA
TTCGTGCCGTCCATTTATTCCCCATGAGACTGGACGGCTGGATCACTCTCGAGGAAAGCG
GATGTAGAACACAGTTGTTGGTTTTTCTTAAAAAAAAAACTAACTAACAGTGCCGCGTCT
CGTTATTACCGTGCGCCGGCCGCGGAAACGATCGGTTGTGTTCTCTTGGTCATGCAGCAT
GCAATGATTCATCTCTAAATGATTGGAATTCAAAAAAATTATCTCTTAAATCATTAATTC
GATCGATGATCCGTTTTCGTGTTGACTTTGTTTCGACGAAATCTTTAAAACAACTTAATC
GATAACTTTTTTTTACTCGTACTTACCACATTTGTTGCAGTTACTTGTCATATTAATAAG
TACTTATTTGTCTGATAAAAAATAACTTAATCGTCATATTTTTTAGAAATTACATATAAA
TATGACATTTCGACATAATCAAACTAGCAAACACAAACAACTTTTTATAGGCGATTACGT
GTGAAAATATGACAACTCAACATATTTAAAACCGATGATCACAATAAATCTTTTTTATCG
TCGTTTGTAAATATGACAACTCGACATAGTTAAACTAACAAGCACACAAAATAGTTTTCT
GACAAAGATGTATGTAAATACGACAAGTTGGCATATTTAAATTGGCAAACACAACCTATT
ACATGCTTTTTTATATCATGCATAATAAAAAACCTGCTACAGGGCTTTGTACGAAACAAC
ATTAAAAAGTGTCAATCAAGTTATTTTTCTGAGACAAGTAAGTGGTTAATAATATGACAA
GTGGGTCAAAAAATATGGCAAGTCTGAACCGGAAAAAATAGTTAAGAGAACATGTCGACG
TGGGATCTAGTTTTGAAAAAGTCAATGGTGAAAACGGATCATCGATTGAATTNNNNNNNN
NNNNNATAAAACTTTTTGAATTTCAAACATCAAAGGCAGTCGGCCCAGACGGGAGTTTAA
GCAGCCTAGTCAATCGCTTTTTTTCAGAACGAACAACTAGCACAAATGTTTGCAACTATC
GCACGAAGAGAAACTAAGTGTCTTAACTTTATACTAACTCTAGTACAAAATTATAATAAG
ATTGAAACACTTATTTTGGGACAGAGGAAGTATAAAACTAGTTTCATTGGCATATTGCGG
AGATAATGTTGTGTGCGTCGATGACTACCATCTTAGGCTGCGCTTGGATGCGGTGTAATT
AGATACAGACATATTACTTTTATGGGTGTATTTTACCGGCGGCTATAAGACTACCAGTCA
AACACGAAATAATGGAAAGAGATCTGTATTTTTTATACACAGGTGTTTATGGCAAAACAA
TCAAACAAGGCCTTATACTTGTAGTAAACCCAGCCATTATGTGGATGTGCTTCCTAAACC
ACACATCCTTTATGGACGTAATTTCATTCTAGAGTCAAACGTTGAACACAACAAGGAACG
CTAACAAGTGGGTACCAAATAAAAATTCACGTACTCCTTCCCTAGTCAATTTTGCGGGTT
GCCAAACTACTTGTTTGTGTTGTTGGTGTCGTTCTCCACCTTAGGGCGTCTTCAAAATGG
ACCTTCAAACCATCCACAACCGTCCGAACTGCATGGACCGAACGTGTTGTGTCGTCCGTC
GTGGATCTGTGTCGATCCATCCAATGGTCCAGACATACTTCTTTCTGTAAATGCGAGACA
AACTGGCGGTTCGAAGATCCAGACAACATCCAAGTAGGACTTCGACACCCCCATCACACC
CAAAAACCCCGTCCAAGATCCCTCTCGGAACCGGGGCCTTCATTCTTTCATTTTTCTCTC
CTTCTGTTTTTCTCTCTTGACTTCGTTGTCGCTGCACCAACACGGGCGCTAGGCCACATC
CATGCCGAAACTCGACGAGTTTGTCACCTTGATACTTGTGATCTACGTTGGGTTTTTTGC
AAAGAGGAGCGGATGATGCAGCATAGTATAGATAAGCATTTCCCTGAGTGAGAACCAAGG
TTATCGAACCAATAAGAGTAGCATGCAACCCCATCTTCAGCGACTGCACACAANNNAGCA
AACACTTGCACCCAACGCGCGCGAGATGGTTGTCAATCCCCTTGGACTCATTATTTGTAA
GCAAATGAAGTGTGTAGATGATAGTTGATAATTGCGAAATAAATAAAAAGGTAAATAAAG
GCGGCGAGGAAATAAAGTTTTTATAAATATATAAGTATATAGATCTGGAGGCCACAGTTT
TCTCTAGTGGCATCTCTCATATAGTAGGCATACGGTGGGTAAATGAATTACTGTTGGGCA
ATTGTTAGAAAAACGCATAGTAATGCAATCTTTATTCACGACGATGATCATGTGTATATA
GGCATCACGTCCATAAGAAAATCGACCGACTCTTGCCTGCACCTATTACTATTGTTGCAC
CCATCGTCCGCTATCGAGCATGCATCTAGAGTATTAAGTAAAGCAGAGTAATGCTTGAAG
AACAATGACATGATGTAGACAAAGATAACTCACCTAATATGAATCGGCCCCATCGTTTTA
TCCTTAGTGGCAACAATGCAAAGACGTGTCTTGTTCCCTTCTGTCACTTGGATATATCAA
TCTAATGGCAACAATGCAAAGACGTCCATAAGCACCGCCAGATTGAACCCACTACAACGC
ACCCCTTTCATTGGAGATAGATCAATCTAGTTGGCCAAACTACATCAATAGATCGGAGAA
ATTTACGAAGCTATAATAGTCATGCAATTAAGAATCGTATAATTCAGAGAAGGCTCAAAT
CTTTTATCATGAATGATCTAAACATAAACTCAAAATTCATCGAATCCCAACAAACGCACC
GCACAAAGTGATTACACCGAATAGATCACCGC