morexGenes - Barley RNA-seq Database

Contig contig_39552
Source Contig contig_39552
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39552 (10495 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_39552

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54984	3	789 bp	MLOC_54984.1	Available	Available	LOC_Os07g32600.1, FRAME:-2, EVALUE:3e-24, 13107.m03303 protein glucan endo-1,3-beta-glucosidase precursor, putative, expressed
MLOC_54985	1	1414 bp	AK376249	Not available	Available	None
MLOC_54983	14	4724 bp	MLOC_54983.5	Available	Available	LOC_Os03g53990.1, FRAME:+1, EVALUE:0.0, 13103.m05914 protein expressed protein
CDS Structure of MLOC_54984

CDS Structure of MLOC_54985

CDS Structure of MLOC_54983

Contig Sequence (10495 bp)

>contig_39552 10495 assembly3_WGSMorex_rbca.fasta
ATGCCATACGAATTTATTACCCCCAACTTCCCACCCCTTTTCCGCCCGATTTGGCCACAG
AAATTAGTTGACTGCGGCCAGCAGCTCCCTCGAAAAACGTCAACCACCAGCGGAGAAGGA
AGGAAAGCGCAAGCAGAAGCAGCCGAGCGAACGGAGACGACGACCCGAAGAGGGAGAAGA
AGATGGTGATGCCCACGGACCCGATGCTATGGCACAAGGTGGCCGCCGTCTCCGGTACCC
CCCACCCCCCTCCCCACCCCCCCTTCCTCCGGTTTCTTCCGCACTCTGACGGCTGGGTGA
AATTGGTCGAGCAGGGGTCGCTGCTCTTGGACTGGGCACCTATGGAGCGCACATGTTCCG
CCCCCAGAACCCTAGATACAAGGAGGTACGCTCGGCCACTCTCCGTTCGTCGACCCCGGC
CCGCTCCCTCGTCCCGCTTCCGACCCGTTCCTCCAAATCACGAATCAATCTGCGTCTTAC
AGTTGGGGGATTTTTTTTTGTTTTGGACAGATTTGGCAGACCGCGTCCCTGTACCACCTC
GTCCACACTGCGGCCTTGCTCGGGGCTCCCATGACCAAGCGCCCCAACGTCGTCAGTATC
AACACCCGCATCGCGCTTTCGCTTTTTCTTATGTAGCCGCGCGCTAATTCATGCGGTTCT
TTGCTGTGTATATGCAGTTCGGAGGCCTTCTGACAACTGGAATTGTGCTCTTCTCTGGAA
CGTAAGTGTGTTTTTGTATATAAATTGCACTGTGAACTTTCGTGGGATGCAAAGAAAACG
TGTGTTTGCGTTGTTTCTGAATGATGGAATGACGCAATGATTGGTGCTCATTTCATTTCT
AGGTGCTACACCGTGGCTTACCTTGAAGACAGGAAGTTCTCTTCACCGGCGCCGATTGGT
GGCTTTGCATTCATTGCTGCATGGGCCAGCCTGCTCTTCTGATTGTATTGTGTTTTATCG
GGTGAAAACTATGTCTACTTTACACAAGGCTTTGTATTTGTCGCTCTATTAGGTCATGAT
TGTACTGCTGTGTCACACATCTTTCTCATGCCTTCAGAGAATAATTAAAATAAATCAGTT
CCGTTGATGTTTCGCACTTCCTCATTTGTACATCCTGCTTAATAGTCGGACCAGTTGCTC
ATGCCAATGAAGCTGCGTCTCTTGTTTCTTTAGATTTAACGCCAATAATTTTTCCATGAC
AATCACGGTATCTTGCCTCTCGTGGTTGGCCTTGCGAACACGGTCAGTTAGGTCAGCTTG
ACTTCTGTCAATCTCTCTGCTTCCATCCATCTACAAAATATCCTCTTTTTCAGGTTATAG
TTTGGTTCACCGTGCTTCCATAACTTGTATGATTATAATTTATTTAACATTGTAGAGATC
GGGCACGGGCACTACTTACTGTAGTAATGATTCAATCTAATTGCACTACAAGTGTCAGAT
AACCATAGTGATTATTGCGCTTGATTATGTCCTAGCTGTTTGGGTCTCTACCCCTTTACG
CACCATAGAAAACGTGCTCAACTTGTATTGATACAAAACCGGGTAGATGACTAAAATTGA
AAATAGTCTGATTATAGATGAGACACAGAGTTGAAACATTCTGAAGTATGGATCAATATT
AGGCATTGCCCTCCTGATTCGAGTAATGACATCCCCTCCACAAAGGCGAACAATGTGAAC
ATTTTTTCCCTTTTCTTTATCTGATTTGAAGGATCAGTAGAAGAAATGTGTCTTCTAGTG
CTTCACCCACCGTTATATCAGGGCACTACTTCAAAGTTACATGAGTTACGACCTGCATTG
ACATGACGGCACAAAGTGAATGACAGGCTGACAATGATCATGTTTTTGTGTACTGCCTGT
GATTCACAATATAAGTAGCCTAGAGCATTTACATGGTTTTCAAAGTAACACTTTGATCAT
AATTTTTTCAAAAAAAATGTTGTTTCAGACAAATTCTTAATATAATTATGACACTAGTCA
TGTCAGTTTCATATTGTCTAAGCTGGTAATTCTTTCTATATCGATGGTCAAACCTAAAAA
TGTTTGACTAACACAAATTCGAAAACTGCTTATATTATGAATCAGGGGGAGTAAGATAAG
TTATTTATATTTGGATGCTATCCTAACTTTGTTAGGAGTACTTGCTGATTCCAAAGAAAA
GAACTTCCGTAAGTGTGTGTGTTATGTGGTGTGTGGTATGTGTGTGTGCTTGTGGCGTGC
GGGCATCTTGTGTGTGTGGTGTGTGCTTGTGCTCTGCATGTTTGATCTTGCCAGTGGAAT
TTCAACCTGCAAAAGTGTATGCTCCTAATGATGGTTCAGATTATGGACATACTTGGATTT
AGGTTGGTGACCATTGCAGCTGCATTGAAGTAGCAAGAACCACCATGTTTCTTGTATTTT
TGCCAGTAGCTGTTGAAGGCATAAGATGCATCGTCCCTGACTGTATTGGGTAGGTAACAT
GATTTGTTAGGCTCAATCATCGTACAATCTGCACCTCCAGGACCACATGCCCAGCTAAGA
GCAATCTGTAGGATACCATCTGGTCTTTGCTCATCCTCTATGCACCATTGCTTCTCCCAG
TTACCATCCTCTGCTTGAATTTATAGGTGTAAGTATTTCTTCAAATTCGTTACATGGTTT
GGTGTTTCATTCATTTATCTGGGAGACTATGGATTCAGATCACACTATTTCAGTTACTGG
ATGGTTCTTTTCAATGTTCAGTGATTATTTCTGTATTTACTAACATAGCACCCCATGAAT
CTTAATATGAACAGCAAGGAGGCCATGATTTCTCAGGCTCAAAAGTTTCTGATATCTCAT
TCAAGAGCAATAAATATACCCACTGATGAATGTGACAGAAAACTGCTTATGGACAATAGC
GCCCCCCCCCCCTCCCCCGGTTTACATGGTTAAAGTCTGCATTGCTTACTCTGAGATTGA
ATTTTATGTTATTAGAATTTTGAAAGAAGAAACACTTGGATGATTAGAGAAAATAAGATG
AAAAATGCAAAATAAGGATAAATAGCACATGAGCATTTTGGAATCAGGAGCTAGAGGTTA
CTGTCATACCTTGCTGAGCCGAAACTGCGGCAAAGTGAAGGATAAAATAAAGTAGCAGCA
TCAGCCTTGTTGCTGCTTGGTTCCTCAGATCGCAGTTCTTCACTCTGCCTGCACTTGGTG
GTAAGTATGTACGCATTTTGCTTCTTTCTACTCCTAGCACCTTAACAACTAAGTAATTCT
ACAGTGTGTTTCGTTTCTTGGAAATCTACAAGTATGCAGCTCAACAAGTTGTGTGAAGCT
CATATAAGGCTCAGTCTCTGTAGATAATAAGAGGGGGGAAAGAATGGGCTGGCTTTTATT
GTCTGAATATTAAAGGCATCCCGCACTTATTCCTTACTTCCTGCACACTTCTGAGAATCT
ATTTCTGAATAAAGCACACAATGCAATGTAATGCTAAAATTAAGAAATAATCAAATTGAT
TACCAGTGATGTAAGACAATGGGAAGTAAATCTTCTTTTATTTCCTGAATTCTGCAATGG
TACAAGTAAACACAATTTTAAGTTTATTGCCTGACAATGTAGATACTTCCTGTCAAATAT
TGTGCTGATGTTGCAATTTATATGTGTTATATGTGATATGTGATATTTTGGATGGGTGCA
TGTAGTTAGGATGGATCATACATATACTGGAGCCATGGTTGATGCTTTAAAAGTTGACAA
TCAAAGCAAAACTTTGATATTTTCAGTATACCAACTTTGATACCTTGGTACGTGGAACTA
CACAAGCGACTTTGTATACTTGGAATCGTATTAGCTGCGCCAATCATGTTCCTTCAGACA
AGCAAAGCAAAAAGATTATTCCTTTCTTTATGATGCTCCCTAGACAAGCCAGGAATCTGA
TGCCTGACCTTGCCTTGCACTCGTTTTCTTTAGAGAACTTTCTTTCCAGTTGCCATATGT
GACATCTGCCGCTGAAATCTGTTTTGTTCAGACACCTATATACATCTGAATTCTACTTGC
ATGGTAAAGGTAAACCTTTCACCTTTGCTTCCCGTCCCTGATTCAACTACTCTTCATCAA
CACCTCCAAGCATGGGTGATGGGATCATCATGGTACCATCACCATCTAACCAGGAGTATA
TCAGAGATGTTGCAGAAATTGATTTACAGGAGTTCAAGGACATCGAGAACATTGCGTTCT
ACCAGGTTGCAGCAAACTCGGGATCGGGCTTGTCAATGGAAAGTGAGAGATCACTAAGGA
TCCATATTTGTGCAGACCGCAATGGTGTCAACTTTCTGCTTGAGTTTCTGCATCATCTTG
TGGATTCGAAAGAGAGCTACAGAGGTGTGACTAACCTTCTTTTTCATGGTATTGAATGGC
AGCCTGAAGCAATCCAACTTCTCTGTTCATACTTAGGCCCTGTCTCAAATGTGAAGCAGG
TGGAGTTCCAAAAAAATGTGTTTAGCACAAAATCAGCTGTTGCTTTAGTCCCACTCTCAG
AAATGCTCCAAAGGAACAACACCTTGAAAGCCGTTGTTTTCAATGATTGTAGAATTGGAG
CCACTGGAGCCACACTGCTTGCGTCAGCTTTGGGAAACAACAGAAGCGTTGAAGAGTTTC
AAGTATGGGAAGACTCCATGGGCTCCAAGGGAGCAGAAGAACTCTCCAAGATGATTGAGG
TGAACTATATGTTGAAGCTGTTGATTATACTTGACAACAGCTCCATTCCAGCGGCCCCGC
TTATCTCTGCTGTGCTGGCACGCAATCGCAGAGTGGAGGTGCATATATGGGGACGCAGTC
GTGATACAAGAGGTGGCATGGACAACTGTAAAATTGTTGAGTTCCTGCCAGAAACTGGAA
ACATGAGGATTTACAACAATATCAATTCTACAGGCCTACAACGGGTTGCTTGTGCTTTGG
CGTGGAACACCACGGTGACAACATTGGACATGACAGGTGTCCCTCTGAAGTCCAGATGGA
CCAAAGAACTTCGAGAGGTCCTCGACCGGAATAGGAGCCTAAAAGTTGTCAAACTTACCA
AGTGTTGCCTCAGGGACAAAGCAGTGGTGTACATAGCTGCAGGACTATTCAAGAACAAGT
ATTTAGAGAGTTTGACTTTGGATGGGAATCGCTTTGGTGGAGTTGGGTTGGAGCATTTGT
TATGCCCTCTTAGCACATTCTCACCACTTCAGACACAAGCCAATTCCACTTTGAAGGTTT
TGAGTTTTGGGGGAAAGAGAACAAATATAGGTAGATATGGTGTGGCTGCAATCTTGCAGA
TGTTGGAGACAAACCAGAGCCTCATTCAGCTGGCAATATGTGATGATGCAAGCCTGACAT
CAAGTGATGTGGTCAATATATTTACAACCTTACAAAGGAATGCCACTCTTCGAATTTTAT
CATTCAGAGGGTGCAAGGGAGTTGAGGGGGAGGCAGTCTTACAGACCATTATGAATACTT
TGCAGGTCAATCCATGGATTGAAGAAATTGATCTTCATGAAACACCTTTGCATGTTGCAG
GCAAGACAGGCCAAATATATGAGAAACTTGGTCAGAACGGGAGTTTGGTTCTGCCAAATG
ATTTGCTTGATTTGCCACTAAGTGCTCCTACATGCTGCCGAGTTGTTCTGTGCGGCCAAG
AATTAGCAGGTGCAATTTCACCCACCAATACCCTGCTTTTTCTAATCTATAGGCATCAAT
AAGCAAATACTAGTTTTATTTTGTTCAGCATACAATTTTGACAACCTGTGAATTTTCTGA
ATAGATTATGTCAAATATCATTTTGATGGAATGTGCTTCACATTCACAGGACATGTGGGC
CTGCTAAATTAGTACCTACATTTTGTTGACTTCACTATACAATGTTTGTACCTTACATGA
CAGCTCTACAAAAACAAATCCCGTTATGTTCTCTAAGAATTGGTTATAATATGTGATGCT
TCAATTTGCATGTGCTCTCAGGTAAAAGCACGCTATGTAGCTCCATGAATCGGTGCATGA
ATGCAATGAATTTTCCTCGCATGGATGTTAGAAAAACTCTGAAGACTCCAGTTGAGCAAA
TGCCATTCAGCGATGAGAATAAGATGAACTCAATCTTTGATGGCAACACAAAGTTGACAA
TGTGTAATCTTGGTGGAAATGAAGGAAATTTTGCGTTGCATGATTTCATGTTCGTGGTGC
TTGGTGGTCCAAGCTTTTTCATGATTGTGTCTAGTTTGGTTGGAAAGCCTGCTACTAAAT
ATCCAAAAAGCATAGATGAGATTGAATGGGAACTCATATATTGGTTGAGGTTCTTGATTT
CAAATTATAGGCGGAGAGTGTCACAGTTACACTCGTTTCGACCCTGTGTAACTATAGTTC
TCACCCATTATGACAAGGTGTCTCATCTACCAGAAGGGCTACAGCCAATTGCTACCGTTG
TACAAAGGCTCAGAGAAGACTTCCATTCAGATGCAGAAATTTACCCCACTGTTTTTGCTG
TGGACTCGAGATCATTGGTTTCAGTAAGCAAACTCACTCATCACTTGCGAAAGACAACAA
AGACAATAATCCAACAAGTTCCTCAAGTTTATGAAGTATGTAATGATTTGATCAAGATCT
TGCATGACTGGAGGTTGAAGAATAGCAGAGCAGTGATAAGGTGGGCTGAGTTCTGCGAGA
TATGCCAGCTCAACATTCCATCGCTAAGGTTGAGATCGAGGCGTGATAATGTGGAGAAAG
TGGACACACGGAGACGTGCTGTTGCTAAATCACTGCATACCTTGGGTGAAATAGTATTTT
TTGAGGAACTTGGACTTCTGGTAATGAATTGTGAATGGTTCTGCCGAGATGTCCTCAGCC
AACTAGCCACATTGAAGTCAATCAAGATAGAGAGCAGTGGTGGTTTTGTCCATAAAGAGG
AGCTGGAGAAGGTTCTGCAAGAGAAGCTGCAGAACCAAATTCCAAGAACAAACTGGAGAA
CTGGTGCATCCTTACAGGCCAGTGATATCATAAATATATTGCTGGAACTCGAATTGTGCT
ATGAACAGGACCCTGGGAACCCACATACATTACTTCTACTACCAGCCATTCTTGAGGAAA
ACAAAGTAGGGACTGAAAAATGGCAGTTAACTATGCCGGAATGTAGATTTGTTGGAAGGC
GTCTCGAATGTGAAGATATACACATGCTCCTGACAAGTGACTTCTTTCCAAGACTGCAGG
TAAAACCGTAAAAACATACACCAACAGATAATTACTACTGTAATTTGTATCTGCCAAGTG
ATCCTTTTATTTTCTTTCAAAACTTGTGGCTTTGCAAACCAGTGCCGCAATTGTTATAGT
TTTCTGGTATTTACTCTAAAACATAAATTAACTGGTGGTTACACCTGGATATTGCTTCAG
TATAGTTTATACAGGTTCGATTTTCTAAAGGAAAATTTTCTTTCCAGGTTCGTCTGCATA
ACAAAATCATGTGTCTTGGACAGCAGGAAGCAGTTTATAACCTCGAGAAAAACCTTATTT
ATACAGTGATCAATGGTGTCCATGTAAAGGTGGAGCTAGGAATGAGGTTTGGCTCATCCA
TAGATGTTCTTGCATGCTCCGGTAGAAACATTACGGACATGGTGAGGCTACTCCACAAGT
TTGTTATCCCAACAATACTGAATTTGTCTCCCAATATGACGTTCAAGGAAAACATTCTCA
GGCCTGACTGTGTGAAATATCTCATACCACGAAGGTTCCGTGCAACTCAGCAGCTCCCTC
TGAAAAAAATAAAGCAAATTCTACTGTCACTGCCGGCAGAAAGCATATATGATTATCAGC
ATACCTGGAATGCAGTTGAAAGCAATAGAAGGCTCATCTTAAGATCAGGATCCGACCATG
CTAGAGATCTGCTATCAGATGATGACTTCCATGAAGTTCTGCACCGCAGGTACTATGATT
TACAGTTTCTCGCAACTGAACTCGCTGTCACCCCGGACAATCTGCAGCAGCCTGAAACCA
TCCCTGAAGCAGGCGTGGTCGATCCCTCCATCCTGGGCATCGCGAGAGGGGTCGAGATGG
TTCTCCAAAGACTGAAGATAATAGAGCAAGGAATAAGGGACCTGAAGGAAGAGATTGCAA
GCTTGAGGTACTACGAATATCACCTTGTGACCGAGCTCCACAGGAAAATGGACTACGTGA
TGAACTACAGCATTCAACTGGAAGACAGAAAAGTGCCCCAGATGTTCTATCTTGTCAGCC
TAGACAACCGCTCCAGGAAGCTGGTCACGAGAATCCTGCCCGGCATGCGATCCCTACGGG
TGCACATGCTGTGCGAATTCCGAAGGGAGATGCATGTGGTGGAGGATCAGATCGGGTGCG
ATCTGATCCAGGTGGACAACCAAGCGGTGCAGTCCCTGCTGCCCTACATGAGCAAGTTCA
TGAAGCTCCTGACGTTTGCCCTGAAGATCGGCGCGCATTTCATCGTCGGGATGGGGGAGA
TGATCCCTGACCTGAGCAGGGAGGTGGTGCACCTGCTCGACTCCTCAGCCATGTACGGTG
CCGCATCGGTGGGGGCTCTAGGTGCGGCAGCGATGTATGGAAGGGCGAGGAACAGCGGCA
CCAATGACATGGGGGAGGACATGAAAGCGGCCAGGCAGTGGCTCGTGGATTTCTTGAGAG
GGCAAGGGGTTCTGACAGGGATGGACATTGCGCAGAGGTTTGGCCTGTGGCGCGTTCGGT
ACAGAGACGACGGCCACATTGGGTGGGTCTGCAGGAAGCACATCGCCGCGAGAGGGGACG
AGGTGTTCGAGCTGCCGCTCTGAACCATTCACTCCGGCGTGCCCAACGGCCGACGACCAC
AGGTGCCTCCCTCTCATGTCACTCTCCTGTTGATAGCTTGATAGGTGGCAGTTGAGAATA
GTGCCATTGTGTGGTGCATAAGTATGCTCTGTTCTGTTCTTATCATTCTGTTGTGTTAAA
TTATGCGTATTCCTGTGTCCTGGCGGATTGATTTATTTGCTGCATTGCATTGACCATATC
TTTGTGGTTTCATCATCACGATAATAGTGAAGGGTGTGATTTGCCTATGAGTATATTCAG
AGTGACATGATTTTATATAGACCAGGCATTTGATTTCCTTGGAGAAAACACACACACACA
CACACAATGTTTACAATGGGATTCAGGACGAGCGGCTGCGTCGCTTAATGGACACAAGAG
AGGCCGAATTCATGGCTTCCTCTACCAATCCAGACGATGATCACTGCCAGCTACATACAT
GGTGGGCACTGTCCGATGCTCCGGCGAGCTCAGTGCTCAGAAGACCGGGCAGCCCTTGAC
GACGATGCCGGGCGCAGTGGGGCAGGTGGCGAGCGGGCAGTGGTCGACCTCGGTGCCCCA
CCACTTGAGGTCGTGGTGCGCGTTCTGGAGCGCGAAGAAGATGAGCACCCCCATGAAGGC
GGTGCCGGCATCGAGCGCCGCCGACAGCACGTAGTTGTACTTCTGCCACCACCCCTTGCG
GTACCTGAAGACGAAGAAGTTGAAGACGGTGCCAGTGACGAGCCAGCTGGCGATGTTGGT
GGGCGTGGCCGGCGGCATCCCGGCGAAGCCGTAGGAGATGACGGGCACGTTGACGAGCGC
GATCCATTTCTTCTCCGGGAACGCCCGGCTCAGCAGCCACACCGGCACCGGCAGCACGGC
GCCGACCACAAACAGCCACACCAGGTTCCGGTACAGCCCGTGCTGGCCGAAGAGCCTCCC
CGGCCCGATGAGGCCCCAGATCACCGACGCGTCGAAGGTGACCCGGTACTTGGGGCACGT
CCAGGGGCTGTCCGGGTGCAGCGCCTCCACGTCGCAGATGTTCTCGATGCTGTCCAGCAT
CCACCATGCCACCGCCAGGTTCACCACGCCGGCGACCACCGTGCCCACCAGCTGCACATT
CATTCATTGAGGTTAAGACGGGAGATTTTTCATGGTTCAAAGCTTCTAGGCGGGATCTGC
ACCTGGGCGGTGTACATGCAGCGTGGCGGGATCTTCATGTAGTGTCCGAGCTTGAGGTCG
GCGAGGAAGGACAGCGCGTGCACGGTGCTGATCCGGCCGTAGATCTTGAAGAGCAGGTTG
GCGATGGGCTTGCCGGGCAGCGCGTAGCCGATCATGAACTGCGCGATGATGTCGTACCCG
GGTTGCTGCAAGCAGACCGCACGATGAACCGGTTGATGATCAGTTGAGCGCAGGCAAAGA
TTGTGCTGCATTACTGCTGAAGAACGGAAAATAGATGTGCACCTGGTTGGTGGTGGCCTG
GATGACGCCGATGGGGAGGGTGACCACGAAGGCGAGCGCGAAGGCGAAGAGCATCCCCCA
CCATGGCAGCTGCACCTGCTCCTTCCACACGAAGCACATGAGCAGCGACACGGCGATGCT
CCCGGCCAGCAGCACCAGGAACCACCACTGCGGCACCTGCTTGTACCTCTGCATGAGCCT
GGCGTGCACGTCGAGCTTGGCCGCGGCGCCGATGGCCCTCCGGCTCTGCCGCCAC