Contig Data
morexGenes
Links



Map Locations of contig_39542 (4438 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_39542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54969 2 2655 bp MLOC_54969.1 Available Available LOC_Os02g53860.1, FRAME:+2, EVALUE:0.0, 13102.m06162 protein OsSub22 - Putative Subtilisin homologue, expressed





CDS Structure of MLOC_54969






Contig Sequence (4438 bp)

>contig_39542 4438 assembly3_WGSMorex_rbca.fasta
CGCGCTGCATTATAGCGCGGTTGTTGCAGCCAGCGCTGCGCGACGTGCAAAACCAGACGA
CCAGCACGCGTTAAACTCGTTTTTTAAGGGGGGCGCGCGTCTGTTGAAGATGCTCTTACT
TGACCGCAACTATTAACAGATCCAACTATTAGCTTGGCAGCGGAGTATTAACAATTGCAA
TGATAACTTTGTACTGTATGTTTGACCACGTGATTAGAGGACGGAGAACATGGCCTCTTT
TCATCTCAAGGGTAGCTCAGCTACACCATTAGTTTAGTGGCTCATGTCAACTTGCCCTAC
TCGACTACGGACCACACCTTAATCTTGCTAGAAGACATCTACTCTCTAGCGTCCAAGCGT
TGGCGTTGTAGCCCAGGGCCATCGTCGTCTTCCTAGAAGCTCAGGGTGGTCATCGTCGTC
TTCCTCGAAGCTCTTGATCCAGCGCCGTGCACGGTGTACCTCCGTGGCACACACCAATGG
CCATTCACATTCACATCTCCGCAACCTGGCTCACCGGCCAGGTAATGGCGATGGGGCTCG
TCACCGAGTGCTTGCGATCGGTCCACTCGATGGACCCGAACGTGTGATTCTTCGTGACGC
TCCCGAAGGATCGCCGTGCAAAGGTGACCACGTACTTCCGTGTCCTCCGTCTCGCGCTGA
ACCGTAGAGTCCGGGGGGTCACCGTGACGCGCACGCCGTCCGGAGCGGTGACCTTGGCCC
TGTACGTGGCCCTGGCGTCGCCGCCGACGTTGCGCACGACGCGGCGCTGCCTGACGGCTG
CCGTTTTGTCCGCGGTGAACACCACCGAGAATGCCGGGTAGTTGTGGTCGCCGACGGAGG
AGACCGCGCGGACCGAGCAGTTGGCGGACGAACCGAACACGGCGACCTGCTCGGCGGTGT
AGCCGAGCGCGCACAAGAAGCCGACGTAGTCCTCCGTGCCGGCGTCGTACACGAAGCCCG
GGTTCACGGCGCGGTGTGGGTCGATGTGCCCGGCCCCGCGCGCGAACGGCGTGGACGCAG
CTCCGGTGGACATGTCGCCGATGACGCCGCCGGTGCTGTCCACGTTGTACGCGGTCGTCA
TCAGGGCGGACTTGATAGCGGCGGGGCTCCACTCCGGCCTCGCTTGCCGGAGCAGAGCAG
CGACGCCGCTCACGTGTGGGCATGACATGGACGTGCCCGATACGATGTTGTACTGTGCTC
TCCTAGCGTCGCTGGCGAGGCCGGTGGGCGAGTTGGCGCCCGTCCATGCGGCGAGGATGT
CCACGCCGGGCGCGGTCACGTCCGGCTTCAGTATCTCCGGCACGCGGAAGTTGGGCCCGC
GGCTTGAGAAGGACGCCATTCTAGGGGACGGTGGCGTCCGGCGTCGACCGACAACGGTGC
CCCGGAACACGATCGTCGCAGTAGGGGATGCTTCCGTGCTGATGTACTTCTTGATCTTTT
CGGAGGCGGCAAACGGGACGACCGTGGCGGGGATGACATTGGCGCTGATCATGACCTGCT
CGCCGTATGATTCGATGCTACCGAAGATAGCTCCGACACCGCCGGCGAGCTTGACGGCTT
GCTCTTTCACAGCACGGGCGAACGCGCCGGGGTCGCACACGACGATCTTCCCGGCTACCA
TGGTGGCGTTCAGCTTCCCTTCCTCGCATATTTTCGAGCCCACGTCCGCTCCATAGACCA
GTGGCACCTTGGTCGCGCCGAACGGCTCCCCCGCGTAAAGAGAGGTGCCCGGGAAGGTCT
CGCCGTTGCCGAGGACGGCGTCAGCCCGAAACTGGCGGTTGACGGTGGACGCGGCCACCG
TCAAGAACCACGGCGCGATGTTGGCGGCGGTGTACTCTCCGGGGCCGGAGTTCCCAGCAG
AGGCGCAGACAACGATGCCTTTGCTGACGGCCCGAAACGCGCCAACGGCGATCATATCGG
CGTGGAATTCTGCGGGCTTGCCGGAGGCGCTGAGCGAGGCAGAGATGATGTCTACGCCGT
CCACGATGGCCTCATCGAACGCGGCGAGGGTGTCGGAGCTCGCACAGCCTTCCTCCCAGC
ACGCCTTGTAGACGGCGATGCGCGCGCCCGGGGCCATGCCGACGGCCTTTCCTCTGGCAT
AGCCGTAGAAGCCTGCGTCGGCAGCAGGAGAGCCTGCGGCGGTGGAGGCGGTGTGTGTGC
CATGGCCGCTGGTGTCAAGCGGCGACTCCGAGTCCGCACCGAGCGCACGGCCACGCGCAG
CCTCCTGCCCCTTGTGGAAGAACTTGGCGCCGACAAGCTTGTTGTTGCAGAGCGTGGAGC
CGTTGAACGACGGCGCCGAGACGCAGCCGCCGCGGAACCTGCCGGGCGGCAACGGCGGCA
GCGACGGGTCGGCGGCGAAGGACGCGCGGCCCTCCGGGTACACGCCGGTATCTATGACCC
CGATGACGACGTCGGAGGCGGCGTTGGACGCCGGGAGCAGCCCGGAGGACGGGGAGAGGC
CGAGGAAGGAGGGCGTGAGGGTGGTGTGCAGCTCCAGCATCTCGTCGGGCACGACGGCGA
GCACGGAGGAAGAGGACGCGAGGCGCGCGGCCTGGCGCCCCGTGAGGCGCGCCGCGAAGC
CCGTGGCGGCGTGCGCGTAGGAGTAGAGCACCGTCGGCGCCGGGGTGGAGATGTCGGCGG
GGATGTGGTCGCGCAGGAAGGAGCCATACGCCCGGGTGGTCCGCAGGCCGCGGCGCGGCA
GCCCTGGCGCGTGCGCTGGCGCGACGTGCACGATGTAGGAGGACCGCGCGTCCACTGCCT
CGATATCCACCTCCGTGGCCAACGCGGCGGCGACGAATCCGAGCAGGACGCATAGGCCAG
CGAGTGGTCTGAGGACCTCCATTGTCGCTGCAACTGCAAGAGATATGGTAGGGTAAATAA
GTAAGCAGCGCCGATCGATCCAGAGCATTCGCGAGATGAGATTCGAAAGTTTTCTCCATA
TAATTGTCGGTGGAGATCTCTGCAGTGCGCATGAGGTAGCTCGTGCTGATCAATGTGCTC
GGAAGAGAGCTCAGATATATTGCAAGTTGCACCCCCTAGTCAGTGGGGACTAATCCACTA
GCAAGCGTGATTGTTTTATTGTTTTTGCATTAAGTATCTACTGGCTGTTGAGCCTATTCA
TATGGTTTTTTCTTCTCAAAAGTTGATTAGAATTTTGAAAAATGTTCTTGTTTTCAAAAT
ATGTTCACAAATAAAAAACTCTTCATGTTTTCAAAATAAAAATCTCAACACGAAAACTGG
TCTGCTACAATATCAAAACCATATCATTATAGAAAAACCGGATCGTTACTGTATCAAACT
CGCATCGCTACAACAAAATATGATCGTTACAGGACCAAAACCGAGTTGCTATAGGCAAAC
GCTCTATGTGGCGAAGGTGCCAACCTAGGCGTATCCCTATACATAGGGGTGAGCACCCAT
GCGGTCATGTCTTCAATGGCGGATGTACATAGTGGACAGGGTCGGCCGCGGCCTACCCTG
CTTGGATTTTAAAATTGTTATATACTTATGTCTCCAACTGTGAAAATCTTACAACTACGT
ACCGGGGGGAGGGGGGGCTACTCCCCTCCAACGATCGATAAAATTTAAAGTACCTAGTGT
ATATTTGACCAATATATATTAGTATATATGTATTTGGCCCCCTCTATCAGCGGCTATATT
CATATCCTGGCTCCGCCACTACATACGTACACCTAGACATGTTTACGTAATCTTTCAACT
AATCTCAACATCCCCCTAATTTTCACCGGGGTGGGCCTCCTCCTTTCCCCCAACTCCAAT
CCTAAACTCCCACGTTTCTTGACATGTAAGTTTATTTAAGCAAATCACGTAAGTGTAGCA
AAGCTCCTCTAGCTGGGCTTAAGAGAGGAAAAGGGCCCACTAGCCCAACAAAACTACGGT
CCACATCGAGCACAATGAGCAGAACCCTCGCTTCCCTCACGCAACAACTCGTCTGCCTGA
CCCCGACACACATCCGTCCAGCCGCCTCGCCATCTCAACATCCCTCTTCCTCGCGGTTTT
GCTGGTTGCTCGCAGGAACCCGCTGCCCGACCCGCCCAGTTCGGTCTTGCCCCTGCCATC
AGTGCCATGCGCCCGGCTACCCGCTCCCCTACACTGTGCGACTGTCGCGTGCATCCCTGC
CCTACAGTCCGGCGGTCCCGGTGTCCCGCCTCCACTTATCCCCACACGTCTTGCCGCACG
CAGCGGCCACCTCTCGATGTGAACGACACCTTCACGACACCGATCAGCACGCCATTGCTA
TAGGCGAAGACGGGGGACTCCGTCGGCGTCTTCGTCTCGTCGGGGATGTGGAGGCTCCTC
ATGCCTCGTTTGGTTAAAGGGGATTGGAGAGGGTTTGAGAGGAAAATCCCTAGGGGGCCC
AGAAACCCCACAGATCCCCGCGCGCCCATTTGGTAGGAGGGGTTTGCTTAGCCCAATC