morexGenes - Barley RNA-seq Database

Contig contig_39537
Source Contig contig_39537
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39537 (9986 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_39537

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54966	1	1939 bp	MLOC_54966.1	Available	Available	LOC_Os02g37420.1, FRAME:-2, EVALUE:3e-131, 13102.m04097 protein ras-related protein, putative, expressed
MLOC_54965	1	626 bp	MLOC_54965.1	Available	Available	None
CDS Structure of MLOC_54966

CDS Structure of MLOC_54965

Contig Sequence (9986 bp)

>contig_39537 9986 assembly3_WGSMorex_rbca.fasta
ATACATCCGTATGTAGTTCACTAATGANNNATCCGTATGTAGTTCACTAATGAAACCTNN
NGTAGTTCACTAATGAAACCTCTTTAAAGANNNTTCACTAATGAAACCTCTTTAAAGACT
NNNATTTAGGAACGGAGGGAGTACATACTTAGTCAAGCACAACAAAAGGTTGAATTGATG
CACCTCACAGAGTGACGCATTTCTTTATTCAAATACCACAAATGGTGCAATTTATCCTAT
GCAAATGTCCTTTTACAATGTGCATTCCAAGTGCATAGATGAAAGTGTATGTATTGCAAC
TATTCTGGCCTCAATGTAGACACCAAAAGTATTAAGCTGCTCCCTCAAAGAAGAAACATG
GAGCTCCTAAATTCATTCACAAAGGAACACCTAAGCACTTGAATACATATGCACTGTAGA
AACAATCCCTTTATCCAGGATGTTGGACAAACTTCCATCAAAATGAACACATACTTGAGG
TCGTTCCTGATTGCTACTTCCTCTGTAAACAAATATAAAACCTTTTAGATCAGTATCTAA
AAGGTTTTAAATTTGTTTACAGAGGGAGTATTTCAAGAATACACTTGATCTTTAAAAAAT
ATAGCTAAACATGTTTTAGCAAATTCTTTTATCAATTTTAGCAGATTCCTTGGTGTTCCT
TTCTTGCTCTGCGAGGTACACATAGCCATAAATGAAGTATCGATGCTGCTTAATTAAGCA
TGCACAGCTCATAATTTAGAAACTCTCCTACCGATTAGTAACACCACCCACAATTTTTTT
GGCAACACCATCCATAATTATGTGACTTTGCATGAATGAAATAGGCTAAAGATTCATCAC
GTACCAGGATTAAAGATCACCCGCATACATAAAAAATTAGATTAAGATTTTGGTAAAAAT
GATCAAAACAAACTACCATATCCCTTTGAGATCATGATGGCACATGTCGATTGCCCCAAC
GCCCTCTCCACCTCTGTTGGAGCCTAGCAAGCCGGATGAAATTGTTGTGGCCGGAGTGTT
GTTGCCTAATTCAGGGGTCCTTTTAGCCATCAATTTTTTTGAATTCCTCGTCAATTTGGG
CTCTGAAAATTCTGGAAAGACGACCGGATGTCTCTTGAAGGAAAAAACTTTAAGAGAAAA
GCACAAAAAGGATGGCTCTAAATCTTGCAGGAGCAAAAGCAAGAAGGATAGCGCTAGAGA
GGAAGCGCAAATGGTTCCATGATGAATGATTCTTGGCTTTCTCAGTTGCATATGTGGGCT
CGGTCGTGTGTGGTTTTCATCGATGTGTTTTTCCTAGAATTGTATTGAGCCAGTTGGTTT
TTCTTTTGCGATACTGGGATATGTAGGTTGTCAGTTACAGTAGTAATGTGCTGGGTGCTT
CGGTCCCGTGGATCCACAGTATGGGAGTAGTTCACATGTGGATGGGTAGTACTGGTTTTC
TAGAAATTAACTGGACAACTTTCTTCTTCTTAATTAATGAACGAGGCAAAAAAAATTACC
TCTGTTTGGAAATAAAATAAAATGATGGCACACAATTCAGTATCTAAAATTGGAAGTTTT
AATAAATTTTCCAATTTAGGAAGTTGTCCATGTGCAGGTGCACATAGTATATATGCATCA
ATATATGACCCAATTATACGGTGGAGGGGAAACATAACGCACCTCTCCTCTCCTTCTTCG
CATGTCCCTTTGAGGATAGTTGTTGTCACCCCGGCCCGATCTCGAGGGTCGTTGTTGTCA
CCCCGGCCCGATCTCGAGCCTCGTTCGTCGGCGCCGATTGGCGATGGCTAGGGAGAGGTG
CTTGTATATAGTACTCCCTCCGTTTCTAAATATATCTTTTTTTTAGAGATTTCACTAGAG
GGCTACATACGAAGCAAAANGAATGAATCTATACTCTAAAGTATGCCTATATACATAGAT
TTTACTAGAGGGCTACATACGAAGCAAAANGAATGAATCTATACTCTAAAGTATGCCTAT
ATACATCCGTATGTAGTCATTTTAATGAAACCTCTTAAAAGACTTATACTCCCTCCGTCT
CAATAATCTTGTCTTAGGTTTGTTTAGAAATGAATGTATCTAAATACTGAAACGTGACAA
ATCTAAGACAAGAATTTTGAGACAGAGGGAGTATTTAGGAGCGGAGGGAGTAGTTGAGTT
TGTGTTGTATTATGGATCGGCGCTATGCCGTTGGGGTTTCTGTCGCTGGTGCTCGCGAGC
AGCCGCTGGTGGTTGTCGTTCCCGTCTTCTTCTGCGACTCCATGGTGGAGGAAGGGAGGA
GGTGCTGGATTCGGCGAAATCTCTCTCAATAAGCTCGCGGGCGTCCCAGATCTGGAGCTC
CAGATTCTTCTTCCTCTCATCTCCCCGAGCTGCCATGGTGGCGGACTGGATGAAGGGCTA
GAAGGGGGCTTCGATGCTCTATCCTCTCTGTGTGTCCTTAGAGCCCAAGATTAGCAGCAA
ATGGTTGGGGATCCCGATGCAGAGAGCACCAGGAGGTTCTCGCCACTGAATCTTCTGGTC
GAAAGGCAACCTCTCGGAGCTCCGGCGACGTTGTCCGGCCCCTGTATTTCCGCCGCCGTG
CAATATGGGAGGCAGTTTATCTGGTTCTTCGTCCTGGTGCTTCCAATGTTTCGTTGGCGG
GTGCTGTAGCTATTCCACTACCCCAAGTGGTTTCGTCCCCGTCGGTGGTGGGATCGGGCC
AGACTCGAAGAAGGCAAAGAGGACTCGATTGCTTTTCATTTTTGTTGTCTGGGGTTCTAT
CTGCAAAATGTCCGGCCTGGGTTGTAATTTTTATTTTCTGTTGGGCCTTTATGTAAGATG
TCATATGCTTATCTAAGTCTGGATCCTTCGGGACTTTTCTTCTGTTCAAAAAAAAAACGG
TGGAGGGAGCATAATCTTTGCTGCTATTGGCCAAATATTGTGACACGGATCAAGGCAATT
ACTGCACAGCCATGTCGGTAGTCTACAAAGCATTATTACATCGAACAAATGAATATCCAC
ACCATTTCATTTAGTTACAGACACAGATGGACAGAAACTATAGATGTTTGCTTTACGGAA
AGATTGCACAAGTGTAGACAAGTACCATTGATGAACATTTGCTCACTGATTACACCGTCA
ACGGCTGAAGGAACGACAACAACCTGGGCAGCTGTTCTCTGTCTCACATGATAGGACTTG
GTCGTCAACTTGCTTAACTGCAGCAGCCGCCTGCTTGAGAGGACGAGCCAGCACCACCTC
CAGATGCATTGGGGACAGCATACCCAACTTTGATACCGTAGGACTGCAGCAAATAGGGAA
AGAAGAATATTATGCATTGAGAAAATAGTTTGGGGGAGAGTACCCCTTACGATCAGGCAG
AACAGAAGTTGGCTTCATATTCACCAAAACTACCAAAGGACGAAAAGCTGCATTTATGGG
GCACCGAATGGAACCTTACCAATAATCAATAAACAAACAGATAGTAAGATGGAACACAAG
GAGCTGCCAATGACAAATGAATAAACCTTGCAAAGCAAAAAAATACAGGAGACAAAAAAA
AGAAGAGAATAACAACTGGAGACCCATCTAATCACCTATCCACACTCATCCCCTGATACT
CAGATGATCAAATGCCAAGAGAAGCACATGATCACACTTCCAATTACTCCCTCCGTAAAC
TAATAAAGAGGGTTTACAACACTACTTTAGTAATCTAAACGCNNNNATATTAGTTTACGG
AGGGAGTACTACCTAACACAGAAAATTTGTTGACCTGCCCAAGTACACCTGTCCACCAAC
CAAAATTTAAATGCTTACAACCTGATAAGATGCCCTCTAGACATTAAGGCCCTGTGCAAC
CGTTTTTTTTCTCTTACATTGGTTTGCACAGGTGCTTAGGATGGGAGGCGGAAGCAAAGT
TTTGCTTCCGGTGCCAACCAGCGCTTGCGAAAATAATTGCTCATTTCAACTCAGGGGTGC
AGGTCCCAGTGCAGGTGTTACGTGAATGTTAAAGCAGCCCAAGCAGCCATATGAGGCACT
TGTACGTTGCAGAACAAAAACAATTTTGAGAGGCTACACAGCTAGCACCGGTATACAGGC
ACTCAGCGCTGTACAATGCCTAATAAGATAAATATGGATCCACAGTTCCACATTTTTTAG
ATCTCTTGGGTCTCACATGGAAGAAACAACATAAACCGAAAGCCTTATTGTTGCATTTTC
TTATGACAAGATCTCCAGCAAGAAACTGTTATCTTCTACTCCCTCCATAAAGAAATATAA
GAGCGTTTAGATTACTACATTAGTGATCTAAATACTCTTATATTTAATTACAGAGGGAGT
ACAAGTTATGTATGGCATCAGAAGGATTTAACATCAGGCCAACATATTTAACTTGGTTAC
TTGATAAACAGAAAATCCAAGAAATTTAACACTCACCTCATTAGATACATCAAAAACACC
ATCTTGGATTTTCTTGTATATTGTTCCAGCCGTCTTAATGAATGCCTGCACCACAAAAAG
GAAGTGAGTTTTTCTTTCTGGACCATTCTGAAAGTGTAATCGACAAAGCACCCTGGGAAT
AAAGCATCACCTCCTCAACATTTTGTGCTGTTTTTGCAGATGCCTCCATAAAGACTAGAC
CATGCTCCTTGGCGAACTGTTCACCCTCCTCATAGCTGACAGCCCGTCTATGAGACAGAT
CACATTTGTTTCCAATTAGCATCACTGTCATATTGGCATTTGCGTGCTGTCTTGCATCTT
CTAGCCAGCTCGCAAGATGGTTAAAAGTTTCCCTCCTGAAATTTGGTTAGCAGGTGGAAG
GACCATTAGCATGAAGAAATCTGAACAAAAAGGTGTTGTATTCCCAAACCTACTGTACCT
GGTGATATCATAAACCAAAAGAGCACCAGCAGCACCTCTGTAGTATGATCTTGTTATAGA
TCTGAATGATTCTTGGCCAGCCTGTAATGTGAAGAGATAATAAGTATGAGATGGACAACT
CTGTGAATTCAAACTCAACAACCACGGTGGATCCTGGACTACTGAAAATGCAGTTCCAAG
CAAAATGACATGCCAATGTAGTTAAGCAGTCATCAACAGCAAAACTTGTTATGTGTAACT
AAGCAAAAGCAAATCATAACATGGTATGATGGACAAGCTAAAAGAACAACTATAAACATG
AGTGTGAAACTTTTTAAGTTAAGTGGACACAAAAGGACCCCTTGGGTAACAAAAGTGTGC
CCATATTGGAAGGAAATGCAATCAAACCATTAGAACTTTAATGAGAAAAGAACACCTTGG
AGAATTCTGTTTAGACTGTCTCAAGAAATGCATACTAGTAGGTTTATCTGAGAAACACTA
TATTACTATAATCTTTTATCAGGCTTTACAAATATATTAGTACAACAGAAATTGGTGACC
AACAGAGAGATGGAAGTTGGTTTTTAGAATCCGTTCCAATGCAGCAATGCTCAAATGGGG
CTTCCTTTTTTGACCAGAGAGAGTAATCCTTATCTAACCAATATAATAACTAGAGTAATA
TAATTTAAACTAGGACATTACAACACAAGAAAGCAAGGAATGTATACTTGGTTTACTCCC
GGAGGGCAATACTGCAAGCAGTATAGGAGGGAAAATAACTAGTGACCAAAATTAATTTGC
ATCTGAATCAAGAGTTGCTAGTTGTAACAGAAAGGGCACGGCGCGGAGCACGAACCGTGT
CCCAAATCTGGAGCTTGATGGGCTTGTTGTCGATGGTGATCATGCGGGCGCCGAACTCGA
CACCGATGGTGAGGTCGTGCACGGGCTGAAACCTCTTGTCGGTGAACTGCAGCAGCAGGC
ATGACTTGCCTACGCCTGCAAAAGAAAGAGACCAACCAATCACGAGGCGAACTAAGCAAG
CAGCGCGTATGGGATCCCGATCCTACCCACGGGCCATACGGGAGAGATTCGGTAGGGGCA
GGGGGGAGATTGTGTGAACCTGTGTCGCCGATGATGATGTACTTGAAGAGGTAGGCGTAC
GACATGGTCGATCCCGGCGGCGGCGAATGGATCGGAGATTCTAGCGTCTGATTGGTTTAA
GAGGGAAGGGGAAGGGGAAGGGGAAGGGGAATTGCGGGCGCTTGTGCACCGTGGAAGAGA
AGGAGGGGCAAAGCAACGAGACAGAACCGACGCACGCGACAGCTAATTTGATGTTGGCGA
CGTGCACGGAGGCCGACCAAAACGACCAGAGCCAGCCCACGATGCGCGTGCCACGTTCAT
GCTACTAGTTCCGGGCCTTCGCGGCCAAGGAATCTTGCTGGATCTACTTCCAGGTGTTTC
TTTTCGCTGATTTTGGACGATGGAGCCTGCCCAGAATCTCCATTTTCTGGGAATACCAAC
CCCCTCCTCCTCCAAAAAAAGAAAAAAAAAACTAGAAACGCACATTCACCTCGCCGTTTG
TGCATAATTGTGCCGAGCTTAGGGTGATGAACTTTCAGTGAGGTGCCTTTCATTTATGTT
GAACTACATTTGATGATCGATGTTATCATACTATAGATTTTTATGAGGTATCAAACTAGT
CCGTAGGCACGGGATAAGAAGCATGCACATCGTCCGATCCACCAGCAAACTCTCATCTGC
GATTCATTTTGCATGCAGATTTGACGGTAACTATAATTAATTTCTTTTCTCTAACAATTT
CTTCCTAAAATCAAGGCATAGTCATTTAAAAATATTTTGTTTGTTTTCAATCATGAGGAC
CCTTGCTTCCTCAAAATTGTTTTCAAAGAGGATCTAAAATTTATTTGGGTCGTATGAAGT
TTTCAATCGTAAGGATTATTTTTGTTTGCTTCCTACGTTGTTTTGAACCGTGACAGTCCT
TGCTTCCGAAGCTTCAGTTTGGTTTGCTTCCGATGCTTAATATTTATTGTTTTGGACTAT
CTTTTTTATTTCTTTCGATCAAGTTCCTTCCGTGTTGTCTCGGTAAAATTGTTTCCATAC
GGTTAGAGTTTGCATTGAAACTGGATATTGCTTCGGTCTTGTTACAATTGTTTGAGACTG
TTTGAGTAGTCGGAAGTTGTGTCCGGTGTATTGTTTGAGCAGAAAAAATATGTTTCATGC
GACTAAAGAATTGGTTGAATGTATCGACAATTGTGACTCGAAAAAAATAAAAATAAAATT
CCAATCATACAACGCATAAAAAAGTAGAACTTGCTTCCGAAGAAAATACAATTGATAACT
TAAGACCAATGAGAAAATATCTAGCATGAGAGATAATAATTTAACCGGTTAAGCACACAA
TGGCAATGAGAAAATAAGCCAAACGGGAAATTAAAATAAATGATGTGAAGCTTGCACAAC
ATATGCTGCAGTATGTGATGAAACTAGAAGCATGGGGGGCAACGTTCAAACTAGAATACA
TCAGGAAAATATAACAGAAAATAAGATAGTTAGAAAAAGGTTTACATGAAGCAATGAGTT
GGTGTGTCACAACATACACGGGGTTGTGTTTTGATCAAAATGATGTTGAAAAAAAAGAAC
AATAGAAAGACCAAAAAAAATAGAAACATGGAGTATGGAAGCAAACCACAAACACCAAAG
AGACATACCTAATATAATATGAGGCGTGTTACATATTACGATGGTGATAACAATGAAAAT
AACATTTTTTAATGAAGCAGGAAGCATTGAAAGCATTTTATCCAAACCAAAGGAGCATGT
GAATTACAATTTGGAAGCCCCGTCACTGCCCGCCAATCCCGCAAGGCCGCCCCGCTAAAC
ACGTCGTAAGCGGGATCCCGCGGCTGAACGCAAAAGTCAAGCGGGTTTATGCGAATGTCC
GACGGTGCCCGCAATTTGCCCGCGTCCATGTACATTTATACGTATGCGTCATTGATTGCG
TGGCCGCAGCCGAGCTAGCTGCTCATGCTGAACATTGGCCCTGATCTGGAAGACCTCATA
GTGCAGTACGTGCAGTCTTTTTTTAGGGGATGCAGTACTGCAGTCGGAAGATAGAAATAG
CAAATACTCCCTCCGTTCTTAAATATAACTCTTATTAGAGGTTTTACTAGAATACCATAT
TTGGATGTATATAAATGTATTTTATAGTGTAAATTCATTCATTTTGCTTCGTATGTAGTT
CGAGTGATTTTTTTAAAATAATATACTCCCTCTGTCCGGAAATACTTGTCCTAGAAATGA
ATAAAATGGATGTATCTATAACTAAAATAAGTCTAGATACATGTATTTTTCGGACAAGTA
TTTCCGGACGGAGGGAGTAGTATTTTGAAAGATGAAGTATTCTGATGCATGTATGCATAT
TAGCTCGTATCGATCAGTCGGCGATCAGGAAACTTGGATACATGCATATCAGTGCCTCCC
GTCCTCCATGCGGCTCTACGCCTGTGTCCTAGCTAGCAACAGTGCTGGTTTGCTACTGCT
GCCTGGATGCATGGGTACGTGCGTATAGATGGCAGGATGGCGGCGTCACGACGTCCCGCG
TATCCCGCATACGACGTCCCGCGTCTCCCGCGTGGCCGCTCGCGGGTTAGAGCGCGGGAT
GCGGGCTGTCCGCAACCCGTCCCACTTGCATTCCTACCGGCATGTAGGGATACGTACGAA
CAAGTATACATGGATGAAAAAATTGAGTGGGGTCACCTGCAACATGGGTCTGCCCCTGCC
CTCGCGCACGGCACCTCACAAAGGTCCTTGATGTCCCACCTTCTCATGGAATCGTCACGG
GTAGGTAAGTAAAGGCGCGGCTAAATTTGTATAACTGCAAGCTTGGTGTTTCTCCACCCC
GGATGCCACGTGCTTGGCGAGTTTTCCCTTGAACATTTCATGAGAGAATTCGACATGGCA
TATGTGCTGAGGTCTGGCCCTGCAGCATCACTGGACCTGAGCGACTGAGCCCTACCTGGC
GGACCAGGCCCGCACGTGTCGTCTCATTTGCGCCCCCGATACCCAACATCGTCTCGCAAT
GGTCTCGGGATGACCGCCCAACGCGTCTCACCCTGAGCATTCGAATGACGAAGGGAGTGT
TGTGCCTCGCGAGGCCCTCGCGTCGCCCTCTCGACACGGGTTGCGTGACTCGAGACTGCG
CCAAGGCTGAGTGCAAGCCACCTGAGGGTCACGGAAGCGTCTCCTGAGCCTTGCACGTGG
AACCCTCGAAGTCTCCACTCGTGACCCTCTCACGTAAGAATGAGGTGGGGGTTGTACACG
CCCTGGAGCCTCTCGATGCGCCACTCCTTGGCCTCGGGAGGACTCCCGCCCACGCCCAAG
TGGAAGCTCCATGCTCCATGCTGGCGGAATACAGTCGAACCGTGACTACACCCACGCCAA
GTGGAAGCCCCACGCTCCGCAATGGTAGAAAATGGTCGAACCGTGACTATGCCCACGCCA
AGTGGAAGCCCCATGCTTCGTGATGGCGGAAAACGGTGGAACCGCGACTATGCCACGCCA
AGTGGAAAGACCCATTCCCCGTGCTAGCAAAAAACAGTCAACTCGCGACTATGCCCATGC
CAAGTGGAAGCCCCATGCTTCGTGCTGGTGGATAAAACAACTAAGGACGCCCTACAGGTC
ACGCTAACCTCAGGATGAGTTGTGCCATACGTGGCTCCTGCTGAGGTTGCTGCTTGCCTC
CTCCAGCGGCTTGCACTCGCCAGCCACCCCTCGGGGCCCATGCAAGCGGGTTCTCGACAT
GCTGCTTGTGCTCGGCTCGGTCCTAGCGGCACTGAATAATGCAAGGGATAGATGCCACAC
TCACAGGACTTCTCCCGCGCAGGCCATCCCACCAAGTCCCTTGGTGTTTGGTCTCCTCGC
GCGGCACCCAAACGCAAGCTAGCGAGCACATTTCATTCGGAACGGAGCTTGTGCGTGCGA
GACTCTCCTTCGGGGCGGATCTCCTAAGGGGTTGTGATAGCCTGGCTTATTAGGAATGAT
AGACTACTCANNNNNNNNNNNNNNNNNNNNNNNNNCGGGAGCCCATTCAAACAGAACTCT
AAGGTTAAGCGTGCTTGGCTTGGAGT