Map Locations of contig_39535 (7815 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39535

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54962 14 5743 bp AK356232 Available Available None





CDS Structure of MLOC_54962






Contig Sequence (7815 bp)

>contig_39535 7815 assembly3_WGSMorex_rbca.fasta
ATCGGATCCCAACAAACACAACGCAAAAAGACTTACATCATATGGANNNNNAAGAGACCA
TTGTATTGATAATTAAGAGAGAGAGAGAGGAAGCCATCTAGCTACTAATTACGAACGTGT
AGGTCTACAAAGAACTACTCACGCATCATCAAAGAGGCACCAATGGACATGATGAACCCC
TCTGTGATGGTGTCTAGATTGGATCTGGTGTTTCTAGACTCTGCGGCGGCTGGAATTGAT
TTTCGTTTCCCCCTTATTAGAGTAAAGAGGCGGTGTGGGAGGCCAATGAGGAGGGCACAA
CCCACCGGGGCGCACCTGGGCCCCCAGGCGCGCTGTGACATCCCCGAATTAAGCTACAGT
GATAAATATAGTTAGACTATTGTAATCACATGCTAATGATACTATGTCATTGAGATTAGC
TAAGCCAAATTACCACTTGACAAAAACCAAAACAAATTTAAATCAAAATTTAAGTCAAAT
AAATTATTTATTAAAACTAATAAATAAAATCATGATTAAGTTGAAACTATTTCGTAAGTA
ATCTTCAATAAGAAACCAACGTCGTTTGAAACATAAAAGTTGCCCTTATCTATTTTTGAG
TTAAACCAACAACACCTAAGTGGCCTATTTAAAACCTAACATAATTCAAATCAATTCAAT
TGGGCCTCAAACTTTTTTTGTATTAGCTTAATATATTCTCTAGTAATTATGTGACAAGTT
TAACTAGATTGGGATCGCGCCTTGGCACAATGGTGCCGGTCCAAACGATGTGTTCAAGCG
TATAAAGATCACACACATGGTGCATTAGTACAAAGGCAAGTTTAGCACATATATTCAACA
GATCAATTGTTTTTCATGTTCAAGAGAAAAAGTAACATCCAGTCTTTTACAAAAAGCAAG
GCATCATCAAGTTCAACACAGTGATATGAGACTACAATAGCTAATTGCATTTAGTCCGCC
CCATAAGCAAGGCAGCATTGAGTTCTCATGAGATTACAAAAAGCTAATTAGACGACATTA
GGTTAAACACTTAGAGCAGGAACATAGGAGAGCCAAACCAAAATTAATGAATGGGATTAA
TATGTAAGCTATAAGAGCCTCTGTTTACAACAATGAAGGAGATAAATCATTGGAGATTCC
GTCCAAGCTACTACACAGACCTCGTCGCGCTCCGTGATGGTGGTCACCTGCAATCCAAGA
CGATGAGAGGAAGAGACAGAGAGAGAGAGAGTACCACAGAGATACATCAGTGGTCATTAA
AAAGAATCTAAGAGAATGGTCTAGCAACATAATGAAACATAATATCTTCTAAGAGAATGG
CGAGTACATATAATTATCTCGTAAAGGACACCATAACTGCATCAACACACATGAAAAAAT
TATGTCCTAAAAGCATAGCGCACTATGGAAATTATTAGTGCTCACGAACATTATAAAAAA
ACTGACAACTCAATAAGCAAACGAAAACCTATAGGAAATTCCCAGTGGTCATAGAAAAAT
GGGAAATGAAGTGGGTCGATTCATAGCACCAGAGAGGCTAACTAAAAGGGAAGGGGGGTA
GGCGTTCTCAGGTTCAAGACAAAAAAGAAACATTTAGTCCATGCAAAAATCAAATGTAGA
ATTCATGTTTCTAGCATAGCCAACCATTATTTATAGATAGGACATGCACTTTTGTATCAC
CAAATAATCTTAAAATGTCAGAGTAGGCTATATTAGAGTTTTAACTTCATTGTCATTGAT
GCATATCGGATCAGTGCCCCTTCCTTGACCCTTCCATAATGTGGTTGTTGCTGCTCCTTG
ACCCTTTCATAATGTGGTTGTTGCTGGTTCCCTCGGAAGAGTGAAACTGCATTACTATTT
GTATCCATGCTTGTTCAGAAACAATTCGACTGTACTCAATTTGAAGAATATAATGAATGT
TATTCCTTGTTTGAAAGTAGCAAAATATGCTTGCCATAAAAAGCCAGTATCCATCTCGGT
AATACTCACATCGAATATTTACAATTGCTTTCGGTAATACCTAATATACATATGTGAATT
ATAGAGAAATCAAAAGCATCAGTAAAGAAAAATCAAGAAGACATATATGAAATATAACCA
CAAGCACTAACTTCTAGTCTACAATTTGTCAGCTTATATAAACAGAACTTAATTGGTTAT
AGGTGACACCAAATAGTACATTATTTTTAGTGAAACCTACATGAGCACAGGTGTACTAAA
ACCTATATGAGCAAAGTTGCACTCAAACCTACAGGAGCAGAGTTCTAATATAATTTTATG
ACAATATCTTTTGCTGAAATTAATCTGAGCAACAATAAAATTCAGCATTTCGATACCACA
AGACCTCAGAATATTTTATGATATAGAACAGTTATAGGTGACACCAAATAGTACAACATT
CTTATAATACACAACCTCCAGTTATCTAGCTTTCAATACTTTAGGGGGGAAATCCCATTA
ATTGTATACCACATAGCTTAACCCCTGTTTATAATACACTAAATGAGGTCATATGCATCA
TGATTAAAAGGTTGCTTATTGTATTGTATATATGGCCATGATTCAAAGTGCTCCATGCAT
GTAGTCTATATGCACATGTGGGCGGCAAAGAAAAAAAAATCTTAAAAGAAAAATGACTAT
AGAGATGTAGTTCTTCTAAAAAATGGCCTCCCAGCATGACACAATCCAGGTAGAGATTAC
AGTAGACCATCTTTTATTAGAAGATACACTAATAGTGCAATAACCTATGCATCGCACAAG
GTAGTAGATAATGATCATTGTCTTGAAGAAAAAATGACTAGAGAGATGTAGTTCTTCTAA
AACTGGAGCACCTGCAAAACCTCACTATGTGTTAGTAGACATATGGTGTCACATAAGAGT
ATTTTCAGCATAAGGAACTAAAAAAGATTTGCAGTTGCTTCGTTATGACCACATCAATAC
AAGTTATACAACACATATATAAGTACTCCAATCTCAATGGGGAATTCACAAACTATTTTC
CCATAAAAGGTAAGTATGGGTAAAAATAGAAGAATTGTTAAATTATTTAAAATAAAATAG
AACACATGCAAAGCTTTGAAGCGCTTGAACGGGGTTGAAACTTTTAAGCCTCATGTTCCC
AAGCAATTTTAATGAGGGGCTACAAAATTAAAACCATGAAGAAACTAAGCAATATATCAG
CTATAGAGCAATACCTGCACTGGCCAATGATGAAACATTTTCCTTCCTTTACTTGGAAAC
AAGGACACCAGCGGCGCGCTTTGGCACGAGGGTGCCGGTCCAAACAACTTGTCGAAGAAA
GATTTTAGGATTCTAAAGGGCTTATGATTGTGCAAAAGTTACACATCTAAAGGGATTATA
TAAGAACAAACCAACAGGAGATGCAAACGAACAAAGGCATGATGATTTAGCTTCCAAAAC
TGATATAAAACCATACAAAACTCATTTAATCTAAGCAAATGGACTCATTAAACCCATTAC
TGATATTCTAGCTTCCAAAAAAAAGTTGATAATAAAAGGCTAGTGAAACATACATCAGAG
TCACGCCACTATTTGTCTATGGCAAAAAGAAGAGGATATAAACAAAACAATATGTACAAA
GAGTTCATTCTAAGCATGAGATGTTACCTAGAAGGAAAAAATAATCCATTCAACAACAAA
CAATGCCTACATTGCATCATACCGAACCCATGCGTACAAAGGTCAACAGAAAGCAAGTTC
AAGGCTTGTTAGCTCAAAATCATTTCCTACATAGCTTAATATCTATAACCCATCTCCAGA
TGATTCCTACAATATTGCAAACCTATCGGAATGAAAATATACCAAAACAATTTCAGTGCC
AAAACTGTAGTACCATGCACATATAACATCTTATGTAGTTTCATAAACCAGTGGAATTAC
AATTCAGAACATACCCATCTTAAATTAGTAAGTGCCTTCATATAAAGTGGTTACCGATCT
TAAATTAGTAAGTGCCTTCATATAAAGTGGGTGTTCACATGATCATTTTACAGAATGAGT
AAATATTGTAGGTTGGTAGAATCATAACTTGCGACTGAGTGCCTTAAGAAGTTATTTTCA
TTAATGTAAGACAACATAATGTTTAGGGACAGTTTTAGATGTGGACCCAAAATATCAGTA
AAAGTAGCAAATATTTTGTATTGCCTTTTAACCATGGCCTACCACAAAAAAGCGACAATA
GTCACAGTCACATGTTGATCACTTTAAATTCCACACATATAATTAACTAACTCATAGTGT
TATTATCATGTGAAAAGATCATAAATGGACATACGCATTTGTTGTTTTCTGTTATGAGTA
TTTGAGGACCTTGCACCTGCTAGCCATGGCATGTCTACTTCTGTGTGAGTATTAATATTT
TCGAGTGTAGATTGTTAGTAAACAAGTTAAATACTTTCAGAGCATTAGTCTGAATAAAAT
ACTTATACATGGACTGTGTCGGTTCCTTTCCTAACATTTAGAATGTCGACCATTTGCCCT
TCTATACTATATAAAAAATGCAAAGAAGCAAGTTTCCTTCCCCTTCCATTATTAATCCAC
ATGCTGGTATGCTTCTTGATGAGCATGCGTTTGTCATCCCTCATCTTCTCATGTTTGAAT
CACTCCTTTCTCATTTGCTCATGTTTGTCTGCTAAATTATGTGGTAAGAAAGTGTTCTAA
TGCATATTTTACTCAACAACTAAGTATGTGTTTCATGTGTGTGAGTAGCTAAAAAATATG
TGTGTATCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCTCAAAGA
ACAGTATGTGCTCATGTGTGCCTCTCATCAATTGCTCTGTTATCTGAAACCTAACGCTAA
ATTGGATACCAAACAATGCAGAGCAATTCAGAGCTAGAGCAGACTAAAGTTCATATGATC
TCAATAAAAGGGATTATAAACCATATAGACCAACTACCTACGCGATCATTTTCATCTTGT
TCACACCTCAGATAGTATATCTTGAAATAGAATTGTTTGTGCCAACTTAATTTACTGCAG
TAATTCAAAGGATAAAATTCGTCTAGAAGATGAATACTATGGAAAGAGAAAGATAGACCT
GTGTCGAAGTAGCTTGGCGCCTGGGGCTTGAACTGCTCTTGGCGGCTAAAAACCTGGATA
GCAAACTAAAAATAGAAGTAGCCCCAAGCACTAAATTAGCCATGTAAGACAATAAATAAA
CTAAATGGGGAATAAATAGAATGTTTGATGATGTTCCTTTTCATGCCTTTAGAGGTACAT
GATGAACACTGAAAAACAAAACAATTCGATAATTAGCAAAAAGTTAAACTATACAAGATG
AGCATATATCAAACATCTTGAGGTAAAGAGCATGATGCAGCGAGCATATAGTTATACTCT
CATTATAATCAATGGCGCAATACTGGTCCATAGTCTAATTTCATATTTTGCATAGGTCAA
TACCCAAGGAACCAAATCAGTCAACCATGTATATTTCTAAAGAAATGTTTAGACTATTTT
TACAAAGATGTAGAAGGAGAGGGAGAGGGCCTGAATCTAAACGTTTGTACCTAGTATAGG
AGCTTCTCGAGGATAAGGTCTGCCGCATCTAGGACGGTATGGAAGAGGCGAGAGAGGAAG
ACGGCCCTGTGGTCTGTGCTTGCCGAGAAGAGATTGTCGTTGTGAACATGTGGTCAATTT
TCTATGGTTATTTCCCATAGTAGTCCATTCAACAGATGAAAAACAAACATGATCCTACTT
TTTTACAATCCACACGGAACCATTGGTAGAGCTGAGAATAGGAAAACCTGCATGTTTGGA
GAACTGAGAATAGGAAAAGAAAAAGAAAAACCTGCAGAGCAGCAACCAAAGATGGAGCAG
GACAAACCGATGACAGCCACGAGCACCCTCATCAGAGCAACCTGCAAGGGAAAACAAGCA
AAACAAGGATGAGCTCCAACCAACCAGAACTGGTAGATAAGGCACACCTGAAGAGAGGTA
GTCCAGAATGTTCAGGTGTTGTTGGTCCAAAGGTCATTGTCGCAGACAAGGCACACCTGA
AGAGAAGTACTCCAATCTTTAGAGGGATAAAACAAACCAAAATTAAACAAATCATAGCTA
TTCTTTACTGCTTGTGATACCTGGTAATGCATTGTGCATTCTATGCACTTCAGTGGGAAC
CCATCATGACATGTGCTTGCTATCGAAACAAAAAATACACCAAAAATGTTTTCAAACTTG
AGCATCTCTTTCCATAACATGGCATACAATCCTACAAAACACTGATTCATAGTCAGTTAA
AGGATGTTATACAACACATTTTTTGCATCTAGTCCAAGATTGTGTGTACTTCTAAAGAAC
ATAAAATAGAGAAATTTGTTTATATAGCACATTTCGAATTTAGATTGTGTGAAAAAACCC
ATATCAAATTTATAATCGATGTATGCATTATACTGTATCTCTGGATATGCAAGTCCATTA
CCAATTGCAAAACCCTTGAGAAGTAACAGAAAGAGTGGATTAAAATGACAAAAATCTTTA
TAGCACAGAACATTATGGGCTAATCCATAAAGAGATGACTAAACCTTCAGATTGATGTGA
ATGCCCTCATTGTTCTTGTTCCCCTTGTATACCCGAGTTGCAAAGGCAGGAATGTAGTGC
CCCAGCATATGACTACCTAGTTATATATAAATTGTTTTCAACAAACTCTGGGTGCTCCTT
GAAGAAGGCCTATCAAAATCGCATGCAGAAAGACGCAAGGAACTAATGAGGAAATACACA
AAAGGCCATTTTTGCATCTTGATTGCAACTCGCAATAAGGGCAATCACTCAGGTTCACCT
CAAATATTGCATAACTAACCTTGTCGCCACAATAGGAAGCACCCACAATAATGGTAAGGA
GCAACGATGCATGTGTTCCTCTACATATATATGCTCACTGGCCGGGAATGCATAACGTAA
TATTTCAAATCCATAATAATGAATTGGTGCCTTCACTTCATTTATGCATCCTATCACAAC
AGGGACACATATTACCTATAGGAATTCATATAGGTCATTGCTGACCCTCGCTCTGTTATG
GTGAGTGTCACACGAATCAGAGTTGTAGGTGAACCTAGTCCCAATTGGATGATCAACATA
GATAAGATTGGAATCGTGCAACAGCCAATATCCAATTTCAAAAAGAGAGAATATTGTACA
GGGTCTAAACAATCTCTAAGAACAAAACTATACAAATTGATTGATAAGTACACAAACTGT
TTGTATATATACCTGATCCTAGCCAAACTCATTCCAGAGTAGTGACATGTCATCCGCTAT
GTGGAAGGGGCCATTCTCATAGAAGAGGGCTAGCTCGCTGCTGCAGCCACGCCCTCCCGT
AAGCCAGATCAGCACGGGGTCCTCCTTGTGCCGCCTGGATTCGAAGAAGTAGAACAGCCT
ACATGAAAAACTGCGCTGGCCAATGAAGTCGCCGTGACGCCCACGGACGCCCTTGGGGCG
TGAACTGCGCGCACAAACAGAGCGAGCGAATGAACATGTGTGTGAGTCTCGGGGAGAGAG
ATGGCGATCATACCGGATCCAGAGCGAACAACATGCAGCCAAGCGCCGGCGGCTCAGGTC
GACACCTGCCTGACCAAGCTCCTGACCGGAACCCCCGCCACAGGCCCCACCGCTCGGTGC
CCAGCCCGTGCGGCCATGGGCGTCCCCCCCCACCCGCCGGCCCCCCCCCGCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCCTCCCCCC
ATCTCCCCCTCTCCC