Map Locations of contig_39504 (8554 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39504

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54921 2 1306 bp AK366966 Available Available None
MLOC_54922 1 1558 bp MLOC_54922.1 Available Available None
MLOC_54923 5 1905 bp MLOC_54923.2 Available Available None





CDS Structure of MLOC_54921






CDS Structure of MLOC_54922






CDS Structure of MLOC_54923






Contig Sequence (8554 bp)

>contig_39504 8554 assembly3_WGSMorex_rbca.fasta
GGGGCGGCGGCGTGTGGTTGGGCTTTCGTCACGCTATTGGCGCTGCTCTGTGCCGTGCCT
GCGCGGGGGCGCCCCGGCGTGCTCTGGCCGCTGCTGCACCGGTGACGCTGGGGCGCCAGC
AGCAGCTGCAGCAGTCCTGGAATGGCGCCGGCCTCTTCTTTCCGGCCCCCTCCGGCGAGC
AACGCTCGCATGCAGATGATCGGAGGCTGGCGGCGCTGGCGTGCCACGAGATGCCGTTCC
TTCGCGGGATCGACGTCAACCGGGCGCCGGCCACGGGCGGCGCAAGCGAGGACGAGGAGC
CCGGCGCGTCGTCGCCCGACAGCACGCTGTCCAGCCTCAGCGGCAAGCGCCGCGCGCCAA
CGAGGAGCGGCGGCGGGGAGCAGGAGCGCGCCGGCGCGGGCAGCGACGACGAGGACGACT
CCGGGGCCGGCGGCGGCGGGTCGCGCAAGAAGCTCCGGCTGTCCAAGGACCAGTCCGCCG
TCCTCGAGGAGAGCTTCAAGGAGCACAGCACCCTCAACCCCGTAAGTGCTCTAACCAAAT
CAACCAAGGTTAAAAAAAAGACAAAGATCCCAATATTTCTTCTTCCATTCCATCCATCTA
AATTTGCTCTGCGTACGTTGATGGACATGGAGCAGAAGCAGAAGGCGGCGCTGGCGAGGC
AGCTGAGGCTGCGGCCGCGGCAGGTGGAGGTGTGGTTCCAGAACCGGAGGGCGAGGACGA
AGCTGAAGCAGACGGAGGTGGACTGCGAGTCGCTCAAGCGCTGCTGCGAGACGCTCACGG
AGGAGAACCGCCGGCTGCAGCGGGAGGTGCAGGAGCTGCGCGCGCTCAAGCTGCTCGCCC
CGCCGGCGCCGCACCTCTACATGCGCGCGCCGCCGCCCGCCACGCTCACCATGTGCCCCT
CCTGCGAGCGCGTCGCGCCCTCCGGCAAGCCGGCCGGCGACGAGAGCCGCGCCGCCACGA
TGGTGACCCGGCCCGTGCCGACCGGGCCGTGGGGCCCCGTCCCGGTGCTGCCCGTGTTCG
TGGGCAGGCCGGCCCAGAGGTCATGATGAACTAACTAGTTAGTGTGCCATGTCATGTCAC
TTCATGTGTTGTGAGCGGAGAGGTTACCATCCTTGTGTTGCTACTTGATGGAGTATCTAG
GAAGAGTAGGCATAGTTACTAGGGTAGTAGTACGTAAGTAGCTCGCCAAGAGAAGTAACT
AGGTATAGAATCTTGTCTTCTTTTGTTTATAACTAGTAGTAGTACACATGCATGTCTAGT
TTGAACTTACAAACTTTTTGTTGCTTCCTTTGTTTACCCAACAAATATCCTGTCTTGTAT
ACAAGTGATTTCGATACTTTTGCACAAAAATCAGGTCACCATGTTTTGATAGCACTACTC
CCACCGTCCGGGTTTATGGGGGGCCGAATTTGCTGTTTTGCTGGTACAAGTGAGGCATGT
GTTTTATCTCTGGACATCGACCAATGGCTGATCTGATTCGTTTAGAGAGAACACAACGCA
ATCTTTTCAACCGCTGAAGCTTAATTATTACCACACCCCTAACGCATAGAGTCTCCGGTA
GTCAGATATTTTGCTCTATAGATAGATGGATGGAAGCGTCAGAATGAGACATGCATGATG
CATGGAGAGCTGAATCCAAAGAGGAAATGTTCCTTTTTCCTCCTTGGCCACGATATTATC
TCTTCGAAGCGTCCGTTCTTAACAAGGGATGAAGGGAGCATGCATGTTCGTAAGAAGAAA
AGAAAACGTACACGTCCCGGAAAAGGGCAGAGGGTAGAGAATCCGGCCCAGCAGAAAAGA
AAAGATGAGAGTGGTGCGAGGCGAAGGAAAGTCCACTCGCAAATACGCCAGTCACACGTA
CGCCAAAACACATGACATGCGTCGCCCATCACACCAATTCTATACACATGATGCGGATGG
GGGACACTGACCCGCCGGTCCTGCTCTCCAATTACTTTCACATCATCTTATTATACTAGT
AGTAGTACTCTTAGGACGCGTTCGGATTGAATCCGACTCCGCGCTAGAGCGAGTGACATC
TAATAATAAATCTTGGAATTGATAAAAGGTCGCTCTTCGCGCTCCGCTCCGCGAGAGATA
GCGCTTAGTATAATATACTTCCTCAGTTCCTAAATATAAGTCTTATTAAAAGTTTTATTA
GATGATTACATACAGATGTATATAGATATATTTTAAAATGTTAATTCACTCATTTTATTT
TAAATATAAGTCTTTAAATTTTGTATAAAATAAAATGAGTGAATTAACACTTTAAAATAT
ATCTATATACATCTGTATGTAATCATCTAATAAAACTTTTAATAAGACTTATATTTAGGA
ACGAGAAAGTATTTACCATTAAACAAGGGAAGTACGTGTAGTACTAACTTAGTAGTGAGC
GCGAGGAACGTGGCGACGCATGATCAACTTGCGGCCGGGACGCGCGGCGCAAGTTGCAGA
CGCGATCTTGGTTAGATTCGGGCGTGCGCTAATCTAATCAGGGCGGGCGGCTGACCCGAG
ACATCCCATGTGCGCAGGGCCACTAAACTACGCAACCGCACGCCTCCCTGTCCTCCGGTC
GCCGGCCGCTTGCCACCACATCCACATCCACACACCACACACGACACAGATAAGTGAGGC
GTAATTATTCAATCAAGCGATCATTCATTCGAGATCATCATCATTAAGAGCGGAGCGGCG
TCATTGACTAATCAGGTTTGGATGTGAGCCATGACACCAGCCGGGACACCTTGCCCCCTC
TTTTACTCAACCTGTCTTTTCCTTATGATGAGCGCTGCGAGATGATGACGGTGATGAAAA
TGGATACTACCTTTTTCATTTTTAAATATAAATTATTTCAGAGATTTTAATACGAACTAC
TCCCTCGGTAAACTAATATAAAAGCATTTAGATCACTGTTTTAGTTATCTAAACACTTTT
ATATTCCCTCCGTTCTAAAATTTTTGTCTTAAGTTTGTTTAGAAATGAATGTATCAAAAT
ACTAAAACGTGACTAGATACATTCATATCTAGATAAATTTAAGACAAGAATTTTAGAACG
AAGGGAGTATTAGTTTACAGAAGGGATATATATGAATGTATATAGATGCGTTTTAGAATG
GATAAATTGTACTCCCTCCGTAAACCAATATAAAAGCATTTAAATCACTACTTTAGTAAT
CTAAACACTCTTATATTAGTTTACAAAGGGAGTGGCATGCTCTTTTTATTTTATTTTACA
TGTATGATAAGAATGTAAGAATTAATCAACAGCTCAAATCTACTCCCTCTGTATCATAAT
ATTTGTTGTTGGGAAGAACTAGTTTAGTTCTCTCCAACAACAAATATTATGGAACAGAGG
GAGTATTATATAATCTTAACTCTCATGTGAAAAGAAGGGATAAGAGAAAACATGTTAAAA
CTGTTCGAATGAGTGTAAATTCAACTATTTTGCTTGTTATGTACTCGTCTATATTAAAAA
ATTTGAAAGAAACTTATATTTTGGAAGAGAGTGAGGCGACCTGTAGAAGCTCCTTTTTCT
TTCTTTCTTTCTTTTTAAGAGTGAGGCGATGATGAAAAGTTTAAAGTTTAATAAGTAGAG
TGGCACGCAATGTTGTTTTGCCTGCAGAAAGTCTCTGATCAGAAAGCCTGCCCGCTTCTC
TCATCACTGGTCGTCACTACTGGTGGTACGCGTCTCATGAATTCCTTTTTTTTGTTCTTC
TCTGCGCCCCCGCTAGCCCCTGCTCTTGATCCTTGGTCTGAAGTCTGAACGAGTCGCGCC
TTACGGGCAGGCAAAACCGACCCGTTTCAGCAGGTCACCCCGTCTGAACATCTGGAGTTG
TGGACTCATCATCTGATCTGAACTGATCTTGACCTGGTTTGGTGCGCGGAAGAGATCCAC
GGCGACGGGCGCAGGCAGCAGCAGCCACATGCGTCATGGTCCGGCCGATGCGTCGTACCG
GAACCAACCGACCGACCCGGCAAAGGTTTCAGTGATCGGATTCAGATCCCAGCCCGGACT
TGCCAATCCGCGGCGGAGATCTTCTCATGATTCTCTTTATATCTACTGCAGGTTCCGCGG
ACGTTCGTGCTCGCCGCCTGGCATGCATCCACGGAGCAAGAATCCCCTCCTGCCGGTGTC
TCCCATATCCAAGCACCATGCTATGACCTGACTCAACCCCACAACAACTTCAACGGAACA
ATCCATTTTGTTCGTCGCTGTTTGTCTGAGACCGTGCGGACAAAAGTGCTGACCTAAGCG
TCCATCCATTTTTAAAACGCGTCCGTGTCAATCAATTTTCGGCTTAAATTTGGGACCGAA
ATGCGTCGGTGCGGACGCGTGCGCCCTTTCTGTGTCCGTCCCAACCACCAAGGTCAACAT
TATTTATGATGACCGCCTCCTCAGGCCCACGCGTCAGCGTCCGCGGTCGGCCTTTTTTAA
TCCGAGCGTACGATGGGTTCCGCCTCATCGAGAACCCATCCGTCCCCATCTCGTCACCTC
ATCGACCGGCTCCTACCAAAACAAGGGCAAGGCCCCACTCTACCCCCACGCCATCTCCCC
GGCGACGACTTCCCGCCGGACTCGCCAGCGTGTCAACGTCCCGGTGCACCATGCGCGGTG
GCACTGGAAACACCGTGTGTCGTTGCCTTACCCTGATGTCACCCTCCCGCACCACTGGCA
TCTGGATCCGGAGAGGATCCGGTGTCGGCTGTGCCACGGTGAACGCATTTTGCATGTGAA
GGAGGTGAGTCACCGTCGGCGTCTACCGACGCCGGAGCAACGGCTCAACCCTGCCTATAC
GGCCGACTCCTCCAACTGGCAGCTCTGGTTCGCGGTCGAGCACGAGGAGCAGCGCCCGCG
TGGCGTGCGCGACGTGCAGCCAGGAGGCCCTCCGCCGTCCCCGACTCTCGTCAGCGAGGA
GGACCAGGAGGCTGAGGCCGCCTACCAGGCGACGCTGACAGCTGTTCTCCGCGAGAGTGA
GGAGGAAGAGACGTACCAATAGTGGCTCGTGGAGGCCATCGCATTGTCGGCCGCCGGTTG
ATGGAGGTGAAGAAGGAGGCGGAGGAGGAACGACGGAAGATGGAGGAGGAGGAGTGCGCC
CGTGCCGCGCTGCACCGCCACCAACACAGCACGCGTCAACGAGATAGACGACGAAGGCGC
GGGCAGCTGCGCTCTGAAACACGGCATTCCCCTGGGCCGGTCCTACGCTGGTCAACTTCA
CCGGCCCCGACGACGACATCGTCGCCTAAGGTTGTCTCCTAGTTTAGGTTTTTTTAATGT
TTAATTAATGTCTCCTAGTTTAAGGTTTTTTAATGTTTAATTAATGTAATGAAGACGCTA
GGCTCTCGTCGGCCTTCATGATCAGCTTTTAATGTTTAATTATGCTTATTTATTATTTCC
GTCCTGGTTTTCTTTTCATGCGACGGTAAAAATAGGTCAAGCGAGTGTTGGACGCATGTG
CCGACCCAAACGCTGAAGCAGACGTTGGCATCCGTCCGACCGACACAAATGAACGAAAAG
CGGACAAAATGACCATTCGTTTGGGTCTTTCAGTTGAACTTGCTCTCACAAACATGCTGC
TGCCCATGGAAGAAACATTCCAGTTTGAGACTTAGGAGACATTGTAGATTGATGATTCGT
CAGAAATCGTGACTATTTTGCCTCCTCGCTGTTGGGGTCCTCCGGCCAGGAGACGTGAAA
ATGTTGACATGCCACCACAGTAAAAACCATGCAGGTCATCCATGCCACCAAACTACTCGC
TCCGTTCCTAAATACTCCATAATTCTTTTTAGATGTTTCATTAAAAGACTACATACGGAT
GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGTCTCCTAG
TAAAATCTCTAAAANNNNNNNTATTTAAGAACGGAGGGAGTAGAAGCCAGCAGGTAAACA
GGGGATACATAGCTTAATAGCTTAATAGTTTACGGCCCCAGCTAGGCATCTACGCGGTGC
TGAAATGAAAAATGATGGATTCTCGGGCACTTTTCATCGTTCCCGACAGTAGATTGGGTG
CCCCTTGTTGCAGTTTTCTGCGAAAGAAATGGAAGAAACATATGGAGTGATTAGTAGGTC
AATTCATGCCCAAACGCGGGGAAGAAAAGGAGATTCAAAACATGCAGAGCAAAATGTGAG
GTTTGCAGTAGCAAGTCAAAAGAAGTGTCAAGTAATTCTTTTGTCGTAGGAGTTGTTTCC
TACTCCCTTCGTTCACAAATATATATAAGATGTTCTACTCCCTCCGATCCAAATTAATTA
ACGCACACTTAGCACAAGTTGAAAGTTGTACTAAGTTTGCGCCAATTAATATGGATAGGA
GGGACTAACTTTTTTCCTGAATCGGATGTTTAGTGTGTTTGTTCAATCATTTCAGTCCGT
ATATAGTCCATGTTGAAATATCCAAAACATCTTTCTGAACAAAGGCAGTACCTTGTAATG
GTTTAGCAGTAGCTGCCTTTGTTTCGTGTACTTAATAATCAATAAGAATTGGTTGTGTGC
ATCGCAATGATGCGGAGGCCGGGGTTTCAGCCTCCTTTTCCAAATGAAAAGGAAAAAACT
CACAAGGAAAAGAACGGCTAGCAAGGATGAAGTAAATATTTTCAAGAACGATGACAATAA
AATGAATTTCAGTCAAATCTAACAACAAGACCTAGGAGGGGGTGGAAGGACTATGAATAT
TTCCACCAATATTATGCTACTCAAACATGACACATTTCTATACAACTTATCAGCTGAGGT
AAAGCTTGAGCTACTTATCTCTTCTTTATGTAAATAGTACTACCTCTATTCCAACATTTT
GCAGTTCAAATTGAACTGGGAAAACGTCTTGCATTTAGGAAGAGAGGCTGCACTCTACTG
CACATGGAACCTAAACATAAAAGGAAATGCAAGCTCAATGGAGTTAGAGTGTGTAATGCA
GAGTATGAGAGTAAGTTTACCGAAGTTGCCAATGCAAATGCTTCATTTTTCTTCATCAGC
ATCTCAGCCACTGAGCTGTAAATCACGAGGGCCTTTGAGGGCCATCGACAGGAGAACGTT
TTTTTACGGTCCTTATAACTGTGCACTCGCTGTCTGAATTTTCCGGAGTACTCAAATCAA
CAAGGGGAGTTCCTTCAACAAAGTTGATAGCAGGAGTCATGTCCATGTTCTTGTCTTCCT
TTGAAGGGGTCCCATTATCATACAACGCCATCGTAGATGATGCGCCCAACAGCATGCTGG
AAGGCTGGATCGTCATCTTATCCTCATCGGAACACTCCTTTCTGGTGTTTTTCTGTTGCA
TGCTAGGAGTACTTGGCAGTGACACAGCTGAAATTGGTACCACCATATCCACATCACCGC
TGGACGGAGTTAGTTTTGCGACATTTACATGTTCTTCTTCACTGCACCGATTCACTCTGC
CTTGATCTCCCTCTAGAATATCCGAAGCATTTTTTCCTGGAACGTTGGTTGTTACATCTC
CAGGTTCTCCCGTTGTCTGTGACACAGCTAAAGTTGGTAGCATCACATCCTCATGAACAT
TAGGCGATCTTGGTTTTGCGACATTTTCATGTTCTTCGCTGCATTGGTTTACTCTATCCT
TGTTTCCGTCTGGAATATTGGAATCATCATTTCCTGAACAATTGGTCGTTACATCTCGAG
GTTTATCTTTTCCATCTCCAGGCTCTTTGCTATTGCTGCTATTCCGTGTCACTCTTTTCC
GTTGAGAATAAATCTGCATGACTCTGTTGCCTCCCCAGTCAGGATCATCTTCAGAGTCTC
TACTGATTGAAACATCTTCCTCACCATCCCCGGAACTTTCATCTTCATGCTCGTCGACTG
ACGTGTCTTCCATGTCCTTAGTTGCCAGCTCTGAAGTATCATCTGGGAGCAAGTCGACAT
CCATATTGTCACAATCATTGTCCACATTGTTATCTTCTCTCACTGCAAGTTCAGTGCTGT
TTTTGCTGGCTTCTCTGCTACAGCCTTCAAGTCCAGATACTTCACGCATGAACTTGGCGA
GCGCATCTGTGATACTTGCACAAAGAGTACCAGCAGCCTTGCATAAGACTTCCTTCTTCT
ACAGACAAAGACATGTCGAAACACACACAATCATTAGAGGGGAAAATGTCAATGCCAATG
AAGATAATTTCCGCACAAAAAAGGTGGTGGTTACCTGTGGACAGTACTCCGGTAGGACAT
TTGATGACACAAAATTTGCTATTGCCGAGACGTCTCCAAGCAGGACAGAGACAGACGCAC
TTGAACTTGACGCGCCCCTGGAATTGATCTGACGAGGTGCTTCCTTTTTCAACTGCATGT
AACATATGAGGCAGATGCAGAGGATGATCATAAAAGTTACTCCCTCCGTTCCTCAATACT
CCTCCGTCCCAAAATACTTGTCTTAGATATGAATGTATCTAGTCACNNNNNNNNNNNNNG
ATACATTCATTTTTAGACAAAGTTAAAAGACAAGAATTTTGGGACGGAGGGAGTATAAGT
CTTTGTAGAGGTTTCATTAGGAGACTATATACGG