morexGenes - Barley RNA-seq Database

Contig contig_39486
Source Contig contig_39486
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39486 (7290 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39486

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54899	1	355 bp	MLOC_54899.1	Available	Available	None
MLOC_54900	2	3402 bp	MLOC_54900.1	Available	Available	LOC_Os04g01480.1, FRAME:-2, EVALUE:0.0, 13104.m00057 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
CDS Structure of MLOC_54899

CDS Structure of MLOC_54900

Contig Sequence (7290 bp)

>contig_39486 7290 assembly3_WGSMorex_rbca.fasta
TCAGCCTGTTTATTCGCAGGATGAGGGTTTAGATGAGATTATTGTGGTGAGTACAAAGAA
TTGGGTTGTCAAATGTAAAGATGATACCATGATCAGTCACACCAGAGTAAATGAATCATT
CATAAGGCAAGTAAGTCTCACCTTCCCACAGACAAAACGGCAATTTTTTATACCGTTAAT
AAGAGCATTTCTCTGAGCATCCACAACTGCTGATTCATTCATTTCAATGCCAACAACCTA
GCATATTCAGCAACATAACTATGAGAAATGCTATTCCAAAGCAACGACGGAGCCATCTAA
CATGAATCTTATCCACAACTGTGTTGTACAATATACTGGAAACAAGAACCATCATTAACA
ATAAGATGAAATGTGCAAAAGAAATCACCATTCCAACACGGTGTGCTAATGTCAGGCCAA
TTGTTCCAGTCCCACAGCATACGTCAAAAAGTAATGTGTCCGAATTGAGATTGGCCCAAT
CACCAGCAAGGGTGTACAATCGTTCTGCAGCAAGAGTATTAACCTGTGTAATTGTGAGTC
AATACCAAAGTTAACAACAAAGCCAGATTGGCAAAGTAGCTTGAAGTTCAGACAGACCTG
AAAAAATGCTGTTGGTGATAGAGAGAACCGAAGATTGCTAATGTGGTCATGGATTCTTGT
TTTATCCACTGCCCCCTCTTCTGATTGGTCCACTTCTGGCACCAATAGTGGGATCAGTGG
ACAGTCAGCAGGTGCTACATTTGATATTCCCGTGTGATCCTGCATGAGAGTGAAAACATC
ATTAGCAGCAAATATTTCAAGAATAACAAAGAAACCTACTTGAAAAAAAAACTGCATCTA
ACATGTGTAAACTTGAACAAAAAATAGACAAGGCCATAAAAACCACTCGCCACATTCCCA
AAGTAGTGTAAAACTGCATTAGTTGGCAAAATCTTAAAAGTTTGATTGCACGTATTTTAA
AATGACTGCTATTTTAAAATGGAGAGAAAACTGTGTAAAGTTCAGTTAAAACAATAAAAT
ATGCTATAACTGCTCAAAAGTTCAGTTCAAACAATATAATCATAGCTCTGATGAACCTGT
TTAAACTTACTTGAACTACTATAGTTGTTAGAGGCAATGGAGGTAAGCATGTTGCAGCCC
CCTGCACCAATGTCTTGGTCAACTTGGCAAACTCATCTTTCATCTGTGCCTCATCAACAC
CTGTTGAGCATACCTGGAAATATAGAAAGTATAGCATGTCAGTGGTATTGCCAGCAGGAA
ATTTGTACTGCATTGAACTGCCTAGCACATCTCATTGTCAGTCCAAACAACCTGGATAAT
AATCATGACTTCTGATATTTGTGTTTGTGTATCTTGTGCAACAACAGCTTGAGCTGGACT
TCTTCCCTCTCGAACCTAATATGGAAATCATAGTATAAACAGTTATCCCCGTCAGGTGGA
TAAAAACAGAGAACTTATGAAGAATCTTAACAGAAAATAGAAACAGAAGCATGAGATACA
GATTTAAATGCTTAGCGAGAGCATACTGTGAATTGGCGCCAAAACCCAGAATTATCAACT
CTATTCCATGCAGGTAAGCATGATAGCTGCAGGAAATCTTGGAACATCATAGCATATTTA
CAGGACAATGCTGAAACATTTGGGCAGTCCACAGGTTCCTCGACAGCAGTCACACCTTCC
CTGAGATTTGTTGTATCAATCATTATTTGTGGAAGATCAGTAAACAAAAAAGAAAGAAAG
AGGAAGCAACAAACCAACCTGAAATTTCCAAGCATAAACCCTACCGTCTTTTTACCCGCC
AAGGAATGTCCCACAGAGAACTCACACTTATTACGATACCCATCAATCACCGGGGACTCT
AGAATGCCTTCAAGCTTGCAAGAAAGACCACCTGGATGATTGGGCGGACACTTAGCACAA
GCTAAAGAGCAGAAGATCATACAAGAAGAGGGGCGTGAAAACGTGTTTGGCAGACTGCAG
CCGATGTAACATGTTTATGCCAGTTCCTACAAAGAACTGCTATAGTGCATATGTTTAGTC
TTACGATACATCCAAAAACAACCTTTTGTGAGATTGATTTGTTTAGAACAATTAAATAAA
ATGTGCGGGGTACTCGAGATCATTAGTCGGGTCAGCAGAGCAAAGCAAATGAACTCACAA
ATTGTATATGTGTTGCAAATGCTCGAAGGTGAATATTAATATTAAAAAAAATTGTATTTT
TTCGTCAGAAAGCTTTATGTGTTGTTTGCTACACTGCTACACTTTCATCGAAATAAAGGT
TGACACACGCTTTATACTCGAGTAAGATAATTTATGTAGTTTGGTCAAGAGACTCTAAAT
GGTACTGAAATAAAGGCAGTGCTGCAGTGCAAGGGTTCCCAACTTTCTGAAGTTTCTATT
TAAGCATTCGAGATACCGAATCCAGGAGATAACAGAGACAACACTGTAAAGAAGATTGCA
AGCTGTTCCATGGCTAAATACAAGTACTTGTTAATATTAGGTGACTAAGACTTTTTGGCT
AGCTAAAGCTTGCAGTGCAATAACATCAGGTGACACTGCGACAGGCTGCTCAGAGCATAG
CTCATGTTAATAGTTGTTGTGCACATAGTGGATAAGCAGAGACCAGGTGAATAAGATAGG
AATAGGAAATAGTCGGATTAAAGCAAAGTCCAACAGGCAGTAGGGATCTAGGATAAGAGA
ACTATAATCTGTTGGGAGTTCTTGTGGTGTTAGGAAAGGGCAAGGGCCCAAGCATCCACT
ACATAAGGATGTCATATATCTATGTCTATGCAATTCCCTGCATGACACTGTCTGGCTACC
CTCGGAAATATAAATTGTTGCCGCGCTGCGAATCAAGGTTCACAACACTGGTAAGAACAC
ACATATCTTATTGATATCAATATTATGTATCTATTATTTTGCGTAACAAGCCTAGGAACA
ACAAAAATTGAATACCATATTGTATCTCGTAACCAGGTGTTCAAAAATCACGTACATGGT
GATCACCACAAGTACTGAGAATAGAACATCAACAGTTCAATACTAGGAGTAGGAGGTTAC
CAATTTGCTTTGCATTGGAAATCCAATCTGGTAATGTAACGTCAGCTGGGCAAGCTTTCT
TAGCATTTCGAGTCTGCAGTAGAAGAAAACAAGAAAAGTGTATATAATTTCAGCAGATAT
AAAGTTGCTTCCAAGATTAAAACGGTAGATGGACATGAAGTTGTTCTTACAAGTTTCTTA
AGTAACTGTGCAACTGAACTTTTCTTGTGCTCTAGCTGATCACTGTATGTCATATGCGCA
AGGGGCGTAACTGCATCACGCACAGTTCTTTTAGTACCTCCTCCTGCTTCAGGTCCGGGT
GTTCCCTCATCAGGAGCAGCAGCATCACTACTGTTTTCTGTTGCTGCTCCGTTATTAGAT
ACCGGTCCTTCTGAATGCAACTTCTGATGAGACCTGCGATTGGCATCTGCTATCTTTATT
TGCTTCCCACCAGATCGATTCTCCTTAAGGACCTATTCGAGTTGTGAGACAAAATTCATT
ATAACTTGTTCTATGGTCAAACAGGTTGCTAGTACGAACCAATGGACAATTACCTCCACG
GCATTTTTCAGTTGTTCAACAGTTTCAAATGTCACAAAACCAACAGTCATTCCTTTCTTC
TTCTTTGCTACTGCATATGAGATTCCCTGCACAACCATCATTGAAATTATAGCACTAAAG
TAGCATAAAACAGGCAAATGAAGTATACTTCACAAGATACAGATGCACTTTTAACATTTT
TCTAATTCTCAATACTTCAACCAGGACATGTTTTAAAAGCTTGAAATGATCTAGTACTCA
AAAAAGGTTAAAAAAGGGCAGCCCGGTGCATGTAGCTCCCGCTTGTGCAGGGTACGGGGA
AGGGTCCGACCACTTTGGGTCTATTGCACGCAGCCTTTCCCTACATTTCTGCAAGAGGCT
GTTTCCAGGACTTGAACCCATGACCTGATGGTCACAAGGCAGCAGCTTTACCACTGCGCC
AAGGACATAAAAAAAATCCTTAGAAGATGCAACTTGTGATGTGCAAACATCACCATGTCA
TGTGCATAACCTCTTAAAGGAATCTCCTCATTAGGCCTTTTTTATGCAATTCAGCAGCGC
AAGCTTTTGCTTACCGGAGAGTTACCATGTTTCCACCTGCCAAACATAGAGCTGATAAAA
AGCCAGTTGTTCTCTAGGAACTACTCCCTCCGTTCCTAANNNNNAGTCTTTTAAGAGATT
TCACCAGGGGACTACATACGAAACAAAAAGAGTGAATCTACACTCTAAAGTATGNNTATA
TACATCCATATGTAGTCCCCTAGTAGAATCTCTAGAGAGACTTATATTTAGGAACGGAGG
GAGTACATTGCAAAGCATGGCAAGACGAGCAACATGCCACCTTGTCCTACCTGATTCATA
CAATACATAACTAGCCTCGTGTATCTGAAAAACCCACATTATAATCTACTCCTACCCGAT
TCATACACAATATACAACTAGCCTTGCGTAAGCCAGTATTCTGCTGTCAGGTTAGGCCGA
TTTGTTTCAGAAGAGACTAAAAGCCGCCGACCTTAGTCCTAGAAAAACCCAGTCATCCTT
GAGCACTTCGTTTTGACACCCTCAATAGCTACTTATAAAACCCCACTCTTGAGTCTAGCC
AGTGAACTACCATGGACTCCCAATACATCGAAATAGTAGAAATACAGATTCTTGCTCCTA
GTTCTTGCAAAAAGAGTTAGTAGTCTCAAAGTTATATCGATTCCATTGGCTACTTGCCTG
CTCGTCGAGGAAGGATTTGAGCCTGTCAGTGAGCCAGTGCCGGGAGAGCCCGACGAGGCA
CTTGTCCAGCGAGCTGTCGTCGATGGTCACCTCCTCCTGCCCCCACCGCCCCCTCTTCTC
GTCCTCCACGGCCTCCCCGTCCTCCTCGGAGACCCTGCGCAGCTTCTTGGCACGGTCGGA
GGTGGGGTCCCACGTGCCGTCGGGCCGCGGCCGCAGCTCCTCCTCCGTGTGCGCGTACCG
GCACGCCTCCCCGTGGTTGCACCCGTCCGGTCCGCCCCCCCGCCGCCGGAAGAAGGAGCA
CAGGCTCGTCTTCGACATCGGGTGCCGCGCGCCCTCGCCGGTGGGGGCGGCGGCTGTGGC
CTCCTCTCCGGCGGGGGCGGATGCTGGTGCGGCGTCTCCGGCGGATGCCTCCGGCGCTTC
ATCCTCCTCCCTCTTGCGCTTCTCCCCGGCGGGCTGGGCCTCCTCCTGCTGCTGGGGCGG
CTGCGTGGTGTCCTCCATGGCTGGATTCTCTCCGGCGGGTGCCGCCGGAGATCCCTCCTC
CCTCTTGCGCTTCTCCCCGGTGAGCTCGGGCGCCTGCTGCTCCTGCGGCGGCGGTGTGGT
GGTGCCCTCCATGGCTGCGGGGACGGGGGAGGGTTGCGGAAAAGGTTTTGGGGGAGAGCC
TGTTTTCATCGAGGCGGAATTCTTTTGGGCCTTGTGTGGAAAAGCCTTCGGCCACGTCTT
CTCCACTCTGGGCCTTTTATGACGAGAGGCAACATGGCCTGGTTATGCAGAGCCCCGACA
GCCCAGCCCACCTCGCTGGCTGTTTGCTCTTGGACATGCTTCAGTTCAGACCTGAGTGGT
CTTCTCCTCCCCCGTCTCCGGCGGCCGGCGCCCTGGAGAGGAAACCAGCAGTAAATCTTT
GGTGTTCCCCTGTACATACTGTTTCTTGTTGTCTTATATGCTTTCGACGGCCGGTCCCCT
CCGTCGTTGGTTTATATGGTAAGGTGTTGCGGATTTGTTCGACTGAGGTGGATTTGGTCA
GTGTTCGATCCCACTTCTTATCTTACATACCATCAGATCATATATGTTGCAGAAGCACCT
CAAATCAATGTCGCTGAAGCTGAGACCCACCCCCATGTCGCCCTCAAATCAATGTCGGTG
GGGGCAGGACAGACCAGACGGGATCCAGCATTCCAAGCGCCAGCTGCTCGGGTTGCATAG
ATCCAAGGGTGTCGCGCTTGTCCATGCCGCTGCCGACGGATCCTGGATTCTCTTGCACAG
GGGGTTAATGCCAACTACAGTAGTAGTAGTTCTCACATGCCCTTAGCTGTTGTTTAATTT
CTTATATCATCTGTCTGTCTGAAATTCTGAATCCGTCTTGTGCAGGTTTGTCATTTCGAA
GTCAGTCAACTCTCCTAGTCTTTCTAACGTCAATGAGCTCAACCATTTCTTATGACCAAA
TGTCAGTCATCTAGTCATCAGTCTTTTTCTTTAACAATTCTCCAATTGAACCAATAGTAG
ATGTAGCTTGTAGTTTCTAGGAAAGCTCCAGTTGGGCAATGGGTAGGTAGCATGTTCTCC
TATAAAAGCTGCTCCAAGGAGCTCTCTGATCCATCACCAATCCTCGCCGTGTAAATTTCC
TCCCAAGACTGGTGGAGATATCGCTGCCAAATGTCTTCTCCGGATACGCAGGTGCTAATT
ACTCCTCCCTTGTTTTTAAGCAAGCATCCGATTTTATTGATCAAAAGAATGTCAGAATCG
TTGTCTCCAGTTTCAACTTTAAGTGTGTGCTCTGCCTTGCCACATAAATGAACAGCCTGT
AAATTCATTTGTGACCTCTGTGTATCTTTACTCTAGATGACACATACTGGTTTCTCGTAA
TAGGTGAAGTTGATGACAATGCATCTGTGTAATCTCTGGTAGTTTTGTTGGCTGAAGTTT
ATTATATATTTTCACTGTCCTTTTTATTATATTGTTTTCACTTCTCTTCAAATGATCACT
CATCAAGTGCGATATACAGGACGGACCACCAACCGTTTCACCTACCACGTCGATGATGCT
TGAATATGGTCGTATGTGCACAACATCAATATGACGAGTCAGAATCAAAATTGGATCAAA
ATGATAGTGTCTCAGTAAGAAATATTTACTACCCGTTGCAATGCACAGGCATATTTGCTA
CTAAGTTCTCATGTAACTAGCATCGATACCTCAACATATAGGAGGTTTATTATCCGCTGC
AATGCACGGGCACTTTTGCTAGTAAAACAAATAGTTATAAAAGATAACATATACCACATC
CGAATCATAGACAGGACGAGGGTCGACGGAGACGGATACCAAAACCATCGCACTATATAA
TAAAATACAATAATAAAAGTAAAAAAATTACATAAGTATCAATCTAAATCATACAAGTAA
GAACTTTTTCCTTTTAGAAAGAAGATAAGAAGAAGAGACTAACCACGGTGGCGTCGGCGC
CGAGATGGGCGCGGGCGATTGACGGCGGTG