Contig Data
morexGenes
Links



Map Locations of contig_39482 (5820 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39482

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54896 2 3348 bp AK252978.1 Available Available None





CDS Structure of MLOC_54896






Contig Sequence (5820 bp)

>contig_39482 5820 assembly3_WGSMorex_rbca.fasta
AAGATACCACAATTGAGTCTGTGCGTAGATTTGCGAAAGTGATCATCTGTGTCTTCGGTC
CTGAGTATCTTCGGCAATCAGTGAAGATGACACAAAGAAATTGATGGCATCTAATGAGAG
GAAAGGTTGACCTGGCATGCTAGGTAGCATTGATTATATGCATTGGAATTAGAAAAATTG
CCCCAAGGCTTGGCAAGGAATGTATTGTGGCAAGTATCGTGATGCAACAATTGTGCTAGA
GGTTGTAGCATCCGAGAATTTATGGGTTTGACATTGCTTTTTTGATATGTCGGACACTCT
CACTGATATCAATGTGTTGTAACGGTCTCGTTTGTTTGCCAAACTTGTTAGTGGTGATGC
TCCTACTTGCAACTACACTATCAATAAACATGAATACACAAAAGGGTACCATCCTTGATG
CACATTTATCAAAAGCATCAAAGAACCCAAAACAAAAAAAAATGTGAATTTGCAAAGGTG
CAAGAGGCAGCCCGCAAAGACATTAAAAGAGCATTAGATGTTTTGCAATCTAGGTTTGCC
ATTGTCCACGAACCGCATTAGAGCTTTTCTTCACACATACAAGGAGATTGAAAATGCAGA
CACCCACTTTCAACTTTAGAAAGATCTCATTAACACCATTGTCAAAGGGCAAATCTCATC
GAACACCATTGGTAAATGGCTGAATAGTGTTTTATTTTTGTACTCATTTGTATTTATATT
CATGACAAACTTTGAATAATTATTTGTAATGCAAATGATTATTGTATTTTGTTTCATTCA
AATAATTCAGTTTGTAATGCAAATGATTATTGGATTTTATTTCATTTAAATAATTCAGTT
TGTTTTCGACTGTTTAAAGGTCTACATTTGTGCCAGGCCAGATCAGCACAAAAAGCTGTT
TTGCGCGAAATGTAAAAGCGTTCTGTGGACCGGTGGGATGCAGGTCTGCTAGAGTTGCTC
TAAGAGTGCTATTCCAGCCATTTGACGGTAGGTTATGAGAGTCAATATGACAGGCATCCA
TTATAAGATAATGTAAGATTAAACATTCCTAATGCCATACGGGCAATCGTGACAAAGAAT
TAGATGACAATTTGAACCACACAGCAATTGAGTAATTGCAGATAATGTTAACACAGGTTC
AGCAACACAAACTAAGTAGTAGACAGGCAGGCTTCTGTTCACTAACAAACTGAGATGCCA
GACAAAATGGAGCAACGCAAAGGTTCCACTATTTCCCAGGCAACACAGTTGCAACCCACA
CTGGCATTATATAGGCAGACTCACAACTTGAAACAAGCTCTCAAACGATGGCATTGGCGT
TGCTGGCGATCCTGGGCCAAAGGTCAGCACACTCCTTGCCCACAGGTCCGGTGATGGCAG
ATCCTTTCATCTCACCCTTAGGGTTCACGATCACTCCAGCATTGTCTGCAAGGCAAATTC
AAAGCCGTTTATTTAGCTGAAAACAGTATGTAATGAACAAGTATTTCACAAGCAAAGTTT
CCTATATGGAACTGGATCAAACAAGGCATGTCCCATGTTCAATTATAGCGATACCGTTGC
AAAGCTACAAAGACGCAACATTTGCTTAAGTTGAATCCACAGGAAAAACGAAGAATAATC
AGATGTTTGGCTCATGGCAAATCCCAAAGTTTCAATGCAGCAACGCCGCTACCAAGGGTG
ATGGGAGATGAGACAACCTTCCGAAGGAGGGAAACCTCGACATCAAAAGGGTTAGTCTGT
GATGTTTGCTGAAGGACTATACAAACATGGATTGTTTGCTCCAAAAAAGCAAAAGGACTC
GGATGTCCCCCCATCACAAAGAAAAAAAATTAAGCACAAAAAACCAACATCCTAAGAAAA
ACATGCAATCCATTAAGACATGCATTTGACATAAATTAATTTGGGCAAAAGCATATGTTT
GCCTCATGGCAAATCCCAAAGTTTCAATGCAGCAACGCCGCTACCAAGGGTGATGGGAGA
TGAGACAACCTTCCCAAGGAGGAATTCCAAGGAAACCTCGACATCAAAAGGGTTAGTCTG
TGATGTTTGCTGAAGGACTATACAAACATGGATTGTTTGCTCCAAAAATGCAAGATGGAC
TCGGATGTCCTCCCATCAAAAAGAAATAATCTTTTACTCACAAAAAAATCATCCTTAGAA
AAACAAGCAACCAATTAAACCAAAAATATTGGGCAATTACATATGTAAGTCTCATGGCAA
TTCCCAAAGTTTAAATGCAGCAACGCTACGATCAAGGGCGATGGAATATGAGACTACCTT
CTAATGGAGGGAAACCTCAACAATAAAAGGCTCACTCTGCGATGTTTGCTAAGGACTATA
CAAACACAAATTGTTTGCTCCAAAAAAGCAAAAGGACTCGGATGCCCTCCGATCACAAAG
AAAAATTTAAAATAAGAACAAAAAAACAACATCCTAAGAAAAAAATGAAATCCATTAAGA
AATGCATTTGACATAAATTTGGGCAAAAGCATAAGTCTCATGACAATTATCAAGGTTTAA
ATACATATGTATTTGAGCGACAAAAATACCATTAGAAAATCAAGCAAAAATTAAACCAAA
AATTGGGTATGTAAGTCTCATGGCAATTCCCAAAGTTTAAATGCAACAACGCTGCTATCA
AGGGCGATGGAATATGAGACTGCCTTCTAATGGAGGGAAACCTCAACAACAAAAGGCTCA
CTCTGTGATGTTTGCTAAGGACTATACAAACATGAATTGCTTGCTCCAAATAAAGTAAAA
GGACTCGGATGTCCTCCCATCACAAAGAAAAAAAAAATAACCACAAAAAACCAACATCCT
AAGAAGAACATGCAATCCATTAAGACATGCATTCGACATAAATTAATTTGGGCAAAAGCA
TATGTTTGCCTCATGGCAAATCCCAAAGTTTCAATGCAGCAACGCCGCTACCAAGGGTGA
TGGGAGATGAGACAACCTTCCGAAGGAGGAATTCCAAGGAAACCTCGACATCAAAAGGGT
TAGTCTGTGATGTTTGCTAAAGGACTATACAAACATGGATTGTTTGCTCCAAAAATGCAA
GATGGACTCGGATGTCCTCCCATCACAAAGAAATAATCTTTTACTCACAAAAAAATCATC
CTTAGAAAAACAAGCAACCAATTAACCAAAAAATATTGGGCAATTACATATGTAAGTCTC
ATGGCAATTCCCAAAGTTTAAATGCAGCAACGCTGCTATCAAGGGCGATGGAATATGAGA
CTGCCTTCTAATGGAGGATTCCCTGGGGTAACCTCAACATCCAAAGGCTCACTCTGTGAC
GTTCACTAAGGAATATACAAACATGAACTGTTTGCTCCAAAAAAAAGCAAAAGGACTCGG
ATGTCCTCCCGTCAGACAAAACATAGATAACAGAATTGTAACATAGGAGTATCTGCCTAA
AATATGCATGGATGGATGGTACTGATTGTCTCATGGCTACTCCCAAAGTTTAACTGCAGC
AACGCCGCTATCAAGGACAATGGAATATGAGACCGCCTATACATGGAGCAAAGGCTTGTT
CTGTGACGTTTGCCAAGGAATATACAAACACAAAGAGTCTGCTCCTTATCAGGCAAGAGG
ACTCGGATGTCCCCCCGTCAACAATCAGGCAATCTCAAGCAGAATTTATATCAAAATAAA
ATGCAAATAGCAACACCTGGAGAATTATCTAGACATACAAGCATAAGCAATTCAGGCAGA
TGGCTCATGAATTCCTACAGGGGCACACACACAAATCAGAATCCTAAACTAGATGTGGCA
CGGCAATAACAATTATACTACATGTGAAGACAAGTTGACGATTTCATGCGACAATGGTAC
TCCACTAAACTAAGATTTATGATCAAGATTCATCATGTATCCATCAGTGATCGACTGACG
GATCATACTACGAGGAGGGAGGCAAATACCTTCGAAGTACATGAAGACACCGTCCTTGCG
TCGCCACGGCTTGCGCTGGCGGATGATGACTGCGGGCATGACCTTCTTTCGCAGATCGGG
CTTCCCCTTCTTGACGGTGGCCATGACCATGTCGCCGACGCAGGCCGACGGGAGACGATT
GAGGCGGCCCTTGATGCCCTTGACGGAGATGATGTAGAGGTTCTTGGCGCCCGTGTTGTC
GGCGCAGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCGGAACTTGTTCCCCGC
GGAGCCTCCCCTCCCTGGATCGGATCAAACAGCGCCAAGAAGAACATTGTCAGAGATGAG
ATTGCGCCGTGGCAGATCAAGAATCGATCGGAGAAAGGGGGGAGAAGGTTCACCTCGCTT
CGACATGGCGGCGGCTGCGGTTGGACCCGGCTGCTAGGGCTTCTCCTGGCTCGCTACTTA
TAGATCGGCGGGCTAGGGTTTTGGCTGCTTTTGGTACGAAAATGCCCTCGGGGTGGTTCG
GTTGCCGCCGGATGAGGAGGGGGTAAAGAGGTCTTTTTTCTGACGTGCTAGGCACGATGC
GGCGGGCGTGGGTCAGAAAATGAAGCGGATGTTTTCGGCCCATGAACAAGGGGTGCAAGT
TATAGGCCCGTTTGAGCTTACATGAAGTGAAGATATAAAGCCCCTAAAAAAATGAAGTGA
AGATAAATAAAAGAAATAGTACACTCGCAACCCGCGCGCTAGAAAGAGAGCTCACGAATT
ATTCATGATTTTGAAGAAAAAAAGTTTAGGATTTCTGATTATTCATGAATTAAGAAATTC
TTCATGATTTTAAAATGTTCGCCGTTAAAAAACTATTCATGATTTTGAAAAAAAGACGTT
CATGATTCAAAAATGTTCCGCAAATTCAAATACATTCATGATTTCAAAAATAAAAAATAC
AAATACAAATGGAAATTAGAAGAAATGAAATACATTAAAAACTAAAAGAAAAATGTCTGA
GAAGGTTCTAGAACCTTCCCAAAACCAAAAAGGAGAGATTTTTTGGTTGGCCCAATGTAC
ATAGAGAAAGCGTGGGAGGGGGCAGGTGGCACGACAATATGCATCGACCTAAGTAGTAAA
TAGGATATGTACTTGTGTTTGGCAAAGCAACAATCTAATATCTCCAATTTGGTTTGCTCA
ACAAGAAAAGACTCAAATTGATCATATGCCCTCCTCTAGAAAGAAGAGTGACAAATTTGT
ATTCTATACAAACAATTTGAACACTTTATCTCAAACGGCAAATTGAGGGCATATTTAGAA
TGCAAGGTTAGAAAATGTAACACCATGTTTGGATATTTGAATTTGACAATCAAATGAGGA
TGGTATATAAGTGGTGAATAACATGTGTTTAGGGTGGCTACCAAAGCAACCTATGTTATC
AAGCTCTCATTCCAAGATGTGCGCTCACAAGTGTGCACACGCCCGTCCTAAATTCCAAGC
CCCCATGTATTTTTTCTGAAACCAGTTTGCCTCACACTATTGAAAATATGCCCTAGAGGT
AGTAATAAAGTGGTTATTATTATATTNNNNNNNNNNNGATAATCGTTTATTATCCATGAT
ACAGCTGTATTGATCGAAAATTCAAATACATGTGTGGATGCATATACAACAAAGTGTCTC
TAGTAAGCCTCTACTGGACTAGCTTGTTGATCAAAGATGACTAAGGTTTCCTAGCTATAA
GCATGAGTTGTCATTTGATGTGATGGACAATACCCAAACCGTAAGCATAGTGTTTGATTG
TATCAAGTTTACTGTTATTGCTTTTTGCATTTCAATGTATCTGTTCTTATGACCATGAGA
TCATGCAACTCAGTGACACTAAAGGAATGCCTTGTGTGTATCACTAGTGGAAAACGGGCC