Map Locations of contig_39473 (10287 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39473

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54889 4 2323 bp AK248866.1 Available Available None
MLOC_54887 1 627 bp MLOC_54887.1 Available Available None
MLOC_54888 1 595 bp MLOC_54888.1 Available Available None





CDS Structure of MLOC_54889






CDS Structure of MLOC_54887






CDS Structure of MLOC_54888






Contig Sequence (10287 bp)

>contig_39473 10287 assembly3_WGSMorex_rbca.fasta
GGAGGGAGTATGTTTTAACTCGTCTAGCTGGGCAACTTGTACCGTCTATTTGGTTTTTGT
ATAGATGGCCTGATTTCATATGCTTGGCTGGAAATTTCCCTTGTAAATTTCATGTTTGTT
TCCCAACAGTGCTGGCTGGAGGATTGGCTATCATGAATATCAATCCAAGGATGAAAAGAG
CAACAACAGAAAAGGCATTCCATTTACATCACCAGGATTTTAGTTTGTTTCTCCAGCCTT
TTCTCTCTGTTTTCACTCTGAGATGCCAGTGCTATATCCTTTTCAAAATTTTCAACATGC
AAAGGCTGCCTGTCCTTTTTTACATTTTTGCCTTTGGTCTTTGTGTCACTGTTCTGGTTC
TCACCGATACGATTTGGACATGATATTGTGTCAAGCCAGCTAGTTTTCCGTACTGTGAAC
ATGAACCGGGGAGGAATTACATGTTTAATTCTACAGAAACTGTGTTCTTATTTTTCAATC
CATGCATGGTTTATTCCCTCTCTATTTGTATGCCGACAACACCATCAACCTAAAACTGCA
GTTTCAGTTTAAACGTTGAGCAAGGTGCTGTCCGCTGGTTGTTATTGGGTCTGGAAGATG
AAACCACCCGTCAGTTAGTTAGTCATATTTTTGACCACGTGTAACAACATGATTGGGCAT
AACAGCTGACCGTTGAATAGACACTTGAGAAGAACACGATTGAAACCAAATAGAACTGCC
CTGTAGAACAAGCAACTCCCTCGCACGCGAACATGTGGCGTCGCGGCATGATGAAGATAA
GCAGGTTTTATACGGCCCTGATTGGCCTTTTGTTTTGGTGTCAGGACTTGAAGATATTTC
GCAGTAGTAATGGAGTAGTTCACGATGAGCCAGTCAAACTAAACATCCAAGGGTATTGCC
GAAACGGGATGACCGTTTTGGTTCTTGAGTGCATATGCTTAGTAAATTTAAAATAATATT
AGTAAATAAATTTTAAAATTTTCTTTTTTCTTTGTCTTTGTTAGAGTAACAAGCGTGTTT
GATAATTTCATGCGAAACGGGATATGAGTGCTTTGTCGGTGAAAGAAGCAAAATTAAGGG
TAACATTTGGCATTTAAAGTTTTTTAAACGGAGGTAAAAATTACCTCATCTATTAATTAA
GTAGAAAAGAATCGTCAGTTAATTACGGAAAATCGGACGAAAACCAAAACAATAATGGCC
AAACTCACTCCCATAAACTGAAACACTTTAGGCAGAGCCCACCTAAAACGACGATATGTC
GACCTGCGTGGAGACAACGCATTTCCAACTCTCACGATGAATTGAGAAAAACAAAACGAG
GCACGACCAGCGCCACGGTAGATCACCGAATGGGCTACCATCAGCCATTCATCATACACC
ACACGTCTCCATCGTCGTAGCTTCGACTCCATAGAAACAAACAATTTGAGGCAATACTAT
GGACACGTCGGAGAAGAGCCGACAACCGCAACCATTGCCGCGTCGCCGACCTCGCTCCCA
CCATCATCGTTGCAATAGAAGTCTGGACGCAATAGTGATACTCTCAGGGCCGCCGCCCTG
ACATCCACCGCTCTGTAGCACCCAACGCAAACAACCAGCACCGCCTTTCGGGGCCGCCGC
CTCGACATACCACCGCTCCCTTCGAGCAGCAACACCGCACAACATAGTTGCCCGTAGCCC
ACGCTGCTCGAGGGCAACCACTCGCAGATTATGAACGCCGCACCACATACGGGGCCGCCA
CTCCGATGTAAAGTCACACCACCCCCTCTAGGGCACATCAACCAAGGCGACACCCCTACC
GCCCAAGCGGGACAAGGATGCCATCAGATCAATGTCGAGATAGAGCCCCACCTCATAGAG
TTGCCACTCACATTGTTCCCGAGATCGCCTTCTCGACGCACCAACAGAAACCACCTCCAG
CCGCCACCCAGACGTCCAGTGTCCCTGACGACGAAGAGATCCGTGCAAACTACAGTATGC
TGACTCTTCAAGGCGATGCCTCAAAGAAGGAAAAGACGTAGCCGCCGACATCGCTCGCTT
CGACCATCCGAAGCTAGAGATTTCTCCCGGAGAGTCGTGCAATGAAGTTCCACGACAACG
CCTTCAAGAAGGGGAACGACGCTATGGCGCCGCTGTTGCCGGCACCGACCAGAAGTCAGG
GCTGGGTTTTCAGCTGGAGCTCCATCACACCTTCGAATCCGAAGAGAACCGAAGCATTGC
ATAACACACAATCCCCATGCTCGGCGTCCACCGGCTTCACCCGCCACCGCGCCTCGAGCG
CATCGTCACCATCAGGCCCACTCCCTGCAACAGATCTGCACCGCATGAAGGTATCAGCGC
CGCGCCCTGCGCCACCCTACACCGCCTCGTCGATCGTTGGACACAAGCACCCCGCTTCGT
CGCGCCACCTTTTCGCACCAGACCCGCTTGACCGTTGCGCCCACGCCCGGAAGCGAAGGC
CACCGTCGTGTCGCCCCTGCCGTCGGACCCTCGAACTGCGTCAGCCATCGTCGAAGCCAC
GTCCGCATGCCTAGCGGAGCATGGCGAACTCGTACGCTAGATCCACCCATGCGTCGTCCA
CACAGGAGCCCCGCCGCCACCCTCCCTCGAGCTTGGCCGGGCTTTGTCGGCGAGCTCCTC
AGGCAGTGGCGAGGAGCTGGGGCAAAGCATGGTGGGGAGTAGTCGGCGTCGGTGGGTTCC
CTCGAGTCGCTACCCACCCTCGAGTCGCCCGAGAGAGGAGACGCGGGGGTTGGGGGTGGT
TGAAGTCTCCTTCATCCAAAGTTCTTTTTCACAAGTCAAAATGGTTAAGCTTTCCTCCTA
AAAAAAATGCAGGTAGCACTTGGATGTGACAATGAGCATATCTATTCTCTATATTTATTT
TTGCCATTTTCAACAAACATTTTGATGGCAGAAGCAAGGGGTGAATTGGATTTTCGCGAA
AGATACTCCCATTTGTAGAGGTTTGTTTCTAGTGATCCTGCCGACACATTCAGCCCTAGT
AACCAATCTTGATTCGTCCCCCAAACCATGTGCCACGATCCCAAATAACCAAGCTAAAAT
ACGCTGCCTGCAGGCTCATGGCCCCAGATCTTCAACAGTAAGTGCATTTGTGTAGCATCC
CAATGCCCATTTCTATATGTGCAACTGTCGACCTGCACCTGCTTGTCTGGCTCCGCTGTC
TATACGTAGCAGTACTTGAGTTCAAAACTGGCTTGCAAAATGTAACCTGACCTTTATGCA
TCCTTGCTAAGTAAGGCTCGCTCAATGATACTTTGCCATGATACAAGGCAAATTTAACCA
CTTGTGCTGTCAATCCCTCCCCCATTTCGTCGGCATGTCATGATACAAGCTTAATCTGAA
TCCAGCAGTCTCTTGAGTGCTGAAGAAACAAGGCACGTAACTTGCTGATTAAGACCGGAA
GCTCCATTGGAGAGCTTAGTGCAAAGTACGAATAGACCATTATGGGACTTGGTCTATTCC
TAAGTCTAAGGCGACCATTTGTTGACATTATGGGACACATGTCGGTATTGCGATTTTCAT
GATAAAGAGAATGTCGGAGAACATCATGGTGGCTGAAGTCTGAGGCCTACTAATGGCCGA
TCGAGTCTTCGAGACGATGAGGACTTTGCTTGGTGATTCGTGACTAGTAACAGCGGCATC
AGCAAGAGGGGGCGGCAACACAAGAGGAGTAGAAAGTCTTAGCTTTCACGATAAAAACCC
AAAGTATGATCTTAATTGGTTGTATCTAACAGTGGCCTTGTTCAAGGCATTGTTTTGAGA
GCACAAATTTTCTTCAGGTCTAAAATCTTAGATCGATGATCGGGCGACGACGATGCTTGT
GCACTGTTTTCTTCTTGAAGACATCGTTTTTGAAAAATATGAACTTCGGACGTTGTGCTG
CAGTTACAAGAAATTGATCGTTGTAGCGGGATCTTTTTTCTTTATTTTGTTGATGGTTCT
GTGCATCCATGATCCGTAATAGGACATTTCGTTGTTGCGGAGGCCAGATGTAATTGATAT
CTTCGCGATATTAATATATTTTCCTTTTAAAAAATGTATATGAAGTAATTTTCTCAATTC
ATGTGTTCCCGAGCATTTGTCGGTAAAAGGATGGGTCTTGAAATGATGGTAGAGCCATCT
GGATCCGTGGAGGAGCAACTTCGTTGTAGGGTACATACCACACATCACAGTTCATGAGTC
ATGCCAATAAAGGCATGTACAACGAAATCACATATGGCGATCATCATGGTGTTACAACAG
CACGGCAATCATCAGGACGTTACAACGGCAGAGACATGCTTACTAGGAGTACGAGCCAAT
TTAGCCTACTAAAACTATAAATATTTCGATACAATGGGAGTACGAGGCGAGTGATCTTCA
TGATGTTGCTTGCGGTTCATACATTGGAATACCATTGGGAAAACAAATCTTATTTAGACT
TGCACCAACCATGGCTGTCCACAAGAAAAAGCAAACACCTCTGACATGTTACAACTGACA
AAAAAACCTGATTATTTTGCGCAACTACATTACTTCGAACCACCGACCAATCGCATTAAC
TAATCCGAATCGATAACGTTAATATTTGGGAGTCATATAGATACACAGAGAATAATCAAT
AAGACCAAACAGCAAGCCCCGATTCCACGAGCAGACATAATTCATTTCTTTCATAGCGAC
CATTCATCCAAAGATATATCGCAGCTCGTGTCACAGATGCGACGAGCCTGAAGGAAGCCC
TGCTGGCCCCACATATGCATCAGGAATCATTTCCAGCAGTAGAACAGGTTAGGGCGCAAT
CTGTTCAAATCATGGTCACCTCAGGCAAATCAGTGTTCAGAAGCACGATCGATCAGCGGC
CCGTTTTCGCACGTTTCATCCCGGTGGAGTTGAAAGGTGATACACTGGGACTGAGATGGG
GGCTTGGGCTTGGGCTTTCCTCCCTTAGAGTGCCATTCAGTATTGCCAATTCTCTCAGCT
GCTGCTTCTTGAAGTAATCCATGGATTCATCCTGGTTATATGTAATACCATTAGCAGGAG
AGGTAACACCGACTTAATTCAATAAACAAAATGAGGACATGGAAAGGTGGGAACTGGGAC
AGACAATAAGATATAAAGGGACATACTACTGGTTTGAGAAGATCTTCCAGTATGACCACA
GCCTGGTTTAAGCGCGCATCAACGATATCCGCCGGGAACTCAGCTTCGATAAGCACATGC
AGTGGTTCGTTTAAGTGCTCGTAGCCAGGCTTATCTCTAAGCTTGTTTTCCTATTCAATA
ACAAAATCAGCTTTTCAGAACCTCTCCAATGGTTTTTGGTAGTCACGGGATGAGTGGAAT
TGTCAAACACAAGAGTTAATTCTATTAAGCCAGATTTTAGTAACTACTCCCTCCGTTCCT
NNNNNNNNNTCTTTTTAGAAATTTTACTAGGGGACTACATACGGAGCAGAATGAATGAAT
CTACACTATAAAATATGTCTATATACATCCGTATTTAGTCTTTTAGTGGAACCTCTAAAA
ANNNNNNNATTTAGGAACGGAGGGAGTAGCAGTTGTCTTATTTATGCATGTGCCAACTAA
AATTGCATGAGTGCATGTTTTCAAAATGGATACCAATGAAATAAGTTATAGAAAACAATC
GACATTCCATACTATCTGGGCAACAACATGAGAATATAGGTAAAATACAATATAATGAAC
ACACCACATTTTAACTGTCAGCTCTATATGCCTACCACATGCACTACTAGTCGATCTTTC
ATGGACCATAATATCAAATGTTACTAGTGATCAAACTTAGTATATGGAACCTAGAAGGTT
TATTGGGACTTTCTGACTGTTTGTGGGTAAATTACAAGAATTTTCATCTTAACAAGCCAC
GGATTGAAGCTTATGACACTAGAAATAACAAATAACTGAGCAGAATTGGAAAGGTTCTTT
TACTTCAATCAATACCAATGCTGCCCATTACTACTTCAACATCTATCAGCCTTTTACCGT
GAAAGGGATAATATACTACTTCTAAAAACATGGGAGTTATACATCAAACAGAAGAATTCA
GGATCGACCTTCAGTTTTACATACATATCCAATTTAATTAACAAATAACAACCATACATA
CTATATGTCTATATCTATATTTTAACGTGCAAAACAAGTACTGTAATGGAACAAAGTCCT
AAAACATCTCTAGAAAAGAAGTGATGCTAGAACATTCTAAGTGTGTTAGCAAGCAACAAT
TGAATGGTGGTTCTAATCTGTGTTTAATTACCTTCACAGTATCTTTCACTGAACCACGTC
CACGAATATAGACTCTACACTGTGTTGTAGCTTCAACTCTTTTCAGGGAGTTTCCTCGTG
GGCCCAACAAACGACCAACAAAGTTGAACTAATCATACCAAAAGATTATGGATGATTTGA
ATTTCGAAAATTTCATAAAAATAAAGTTAAATAGTTTATCCAAACAGCTTGAGGTGAAAG
TACGCCGTACATACATTTGGATACTTTTCTGCTGGAACATCCATCCTGACAAGTTTCTTC
ACAACAGGACCGCCAACAACTCCGGGACCACCATTCCAGCCCATGGATGGTGAATGGTGT
ATCCCCATATGCTGAAGAAAGGCATTTTAATAGAATCAATGCAAAGAAATAATACAAAAG
TGCTTCTATTTTGCATTGAAGATGGCCAGTATTGCCCATTAATAATTACATGATAAGAAC
AAGCTATACAAGTCAATCCTAGAAACAAAAACAAGTTACACAAGTCTCTTAGTTGTAATA
TCAGGAAAACGATATGAATAAACAGTCTGTATATCCACACCACTTCCTTAACAAAACTCA
GGTTGATTTTTTACTGTATTGTCGAAATACGATCGTCATGGGTAGATGAAATTGCTGACA
GGCTGTAAAGATCGGTTACAAGAACAACTGGACATCATTTAAATATTATCCTTATGAGTA
GAACCAATGGTTCCTAATCATTAATCTCGTAGGAATAATTTCAGATCAAAGGCTTGGATG
GGAACCACCATTGAAGTAGCAAGAACCTTGTCGTTCTCTCAAAAGGAAAAAGTCGAATCA
TGCCATTCTTGAATTATTTAAAGCTATTAATATCTGTAACAGTGACCGTAACTTGATTGG
TGCTTTTGAAACCATTCCTATTAGTACCACAACGTACAGCTTGCCTTTTCTTTTCGTTTC
ATGTTAATGTGCTGGACAGCTGACTGAAACTCGGTCCTAAATTAGTTCATTGGTTCCTGC
GAATTTCTAAACAGCTTCAAGGATAACATGAACTAGTGGCAGCACTGGTAGAGATTTGCA
TATTTGAAATAGCCATATTAGAATAAGAAAAAAAAAGTAGAGAAGGTAGATATAATCATG
CCAGCATTTCTCTAACAGCTATATAGAATGTTAAGGCAGTTAGGACTTGTAAAACCAATA
ATCAGAAGATTGTATGAATTTGCACAACCTCTGCATGCATGCCAGTCCATCCCTCCAAAT
CCATTGGTTGACCATTCATAGGGTGGCCAGCTAATCTTAATGGGCTACCATAATCGAATC
TCTCAGGTTCAACAAAATTTGGGTTAGGTGGCAAAGAAGATGCCCGCAAAATTTCTGCAT
TGAAGAAAACAAGCAGTATGAAATCCGTTAGTTCTATTCGACCTGGAACTACAACTGGAG
GTTAGAGTTTAGAAATCGCCACTCAAGTAATATAGCGGTTACATTATGATACAGAAGTGA
AAAGTAAGCATGTTAACTGAAAGTTATGACTGAGGAACTTCACGGTGTTAGACTGTCTCA
TATTCTTGTTTCGTCAATGAGTTAGTTCTACGCTTTATACAATCTCTTGCAGCAGTTTAT
GTGATTCGCATGAATGACATCATTTGGGACTCCAAAGTAACGGTATGGTGGAATATAACC
TTGACAGGAACCATGACAAATGACTGATTACACATTCTATTTTTTCCCCTCATGAGCAGC
TTTTTATATAAAAAAAAGAATGGACATGATTGTCCAAAGAAGGATATCAGTTTCTTCCAA
CGGACAGTGTGGATAGCTAAGAATAACAATTGGGTGAATGTATGTAGCACTCTAATGTTG
AGAACTACATACACAAATAGCATCGATGTATAATTCAGAGAAAAAAGAAGAAGAAGGAAA
CAAACCTTGGTTTAAAAGCCTATTACAGAATGGAAGAACTTGCAGGAAGGGAACGAGTTT
CTGCCTCTCGGCAAGTAACTCAGCAATATACCTGCAAAGCAAACCATCTCATTGAGTCAT
TGGTAAGATCAACCGCAAGTATCACAGGAACAGATTTATTTAAGAGCAAAAAAAAAAGCA
CCAATAATTTGCGGCCTAATCAAAAGTCAAAACAATGAACACTCTGCAAATGACCTTCAC
ACTATCGGAGGCCAATCGAGGACATCAAGCTCATTTATTCGTAACAGCAAGCACAAATCT
ACCATTAGCAGGCAGTCCCCAAATCCTCAACTCGGCACATCACTACAGCGTGGGGGCATC
ATTTGACCATTCACGAAAATCACACCGAGACGGTCCAGATTAGGCACAAATCTCGCACGG
CCAGAGTCAAATCTCACGCCCACGACGATTTTTTTCAAGCTAGTAGGATCGGCGCGAAGA
TAAAAACGAAAACTTGACAGCGGTTCACAAGAGGAGGGGCGGCACAGACCTCTCCCTGTC
AGAGGCAGACGACCTCATGGGGTTGTGGTGGTGAGGGGAAGAATGGACGCCAGACGGCGA
GTAGTGGAAGAAAGGGGGCGGCGGGATCCTCTCATCCATGGCTCCCAGCATGAAGAAGAA
ACCAAAGAAGAGCTCTGCAAGATTGCAATCTCTGGGCAAGCCAGGGAGCCAAGAAATCTG
GAGAAGGGAGAAAGGGGAGCAGCTGGTAGCTATCAAAGCAAATGAATGTGGTGGAGGCCC
TATATGGAATCCAATGAAATCTGGAAAAGACAGGAAGGTGCCAAGAACCAAGAAATAAGT
GTAGGGATGGCCGATGGGTGGGGATTATATATGCTATAGATTAAATAAAAAAGGGGAGGT
GATAGCTGGGTTTGCGTCAATCAATTATCGGAGCCCAGGCTGTGCGGGGGTTGGCAGCAG
CGCTTTGTGGCTGCCCGCCCGCTCCTGCTGTTCTTGCTTGCTGTTCCTCCTCCCTGTACT
TCAATGTCGCACCCTGTGGACGGACAGGGGGGTGGGGGGTGGGGGTGAGCGGTGAGAGGG
AGGAAGAGACAAGCCGAGGACCTTGGATGCTCGCTCACTGCTCTATGCAACTCTCTATGC
AGCTGCGCGTCTCACCGGTTTCTGAACTTGGGGTCATTCGAGCCCTGCGTGCCGAAAAAG
CACAGCAGCGACCGAGCTCCACCCAGCTCGTTATTTATTTTGCCAAGATACTATTTCCAC
ACATTAAAAAATCTGAAAAAAGTAATACATAGATGTGTATTCTTTTTTTTTTTGAGCTGC
ATAGATGTGTATTCGCAGTACACACGTATAACGAGCATTTATGCTTTCATGTAGCGTATA
CAAAAAGGATAAATACACAGATTAAAATGAACTTTATCTTTGTTGTATTTGAATCAGATA
TTTATCTTTTTTATGTAGCATGTAAATAGCCCAATTACCTGATAAAACTTTTTACATGCT
TGACTATCATACATATGTATCTGTATAAAAAATATTATTTTTTTAAACTTTTAAGTATAT
ATTGATTTTTTCAGTGAGTCCGGTCTCTGCAACGTCGCTCCCGTGCCTGTCTCCTTTTCT
CGTGTTTTTTTCTTCCTTTGACAGGTATTTCTTTTCCGTCGATTAGAGCATCTACAACCG
GATTGGTCAAATCCGGTCCTTCATACATCCACGAACGCGTCTGGACACGTCCACGAACGC
ATCCAGACGGTCCCTAATATTTCGTTTCTTGCATTCACATATCTCATATTCGGACTCTCT
AATCCATGCAAAACCATGCACGTCGATCATATAAATAATTGTCAAACGTAAATAACAAAT
GTTGGTATCGAACATAAATAGTGTTTACATAAAATTTATTTGAAGTGCACAATCAATCAT
CTGCTTTTTGGTTTTCATTATGGGTCCAGATATACTTCACCATAGCACTGAGTAGTTTGC
ACGTGCACCTCATGATCTCAGAGTTCTGATGAATGTGTAGAAAGTTCATAAGGTGAGTTG
CATCTTGATCTTCCGGGATTTCAACTTGTTCTCCACGTGCTTCAAAATCATTGGTTTGGG
CTACACGTGTTGGAAATATGCCCTAGA