Contig Data
morexGenes
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Map Locations of contig_39472 (7366 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_39472

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54885 7 2089 bp AK362499 Available Available None
MLOC_54886 3 1900 bp AK364126 Available Available None





CDS Structure of MLOC_54885






CDS Structure of MLOC_54886






Contig Sequence (7366 bp)

>contig_39472 7366 assembly3_WGSMorex_rbca.fasta
GGCGAGGCCCGCGCATTCCTCGCCCTCGCCGCCCGCATCAACTTCGGCGCCCCCTCGCCA
GATCCCCTCAGGTCTTCTTTTTCTTTTCTTTTCCCCTTTTTTCTGGCAATTTCATTCATT
ACAGACAGCAAAAAAAGACCTTTCATGGAGGAATTTGTTTTCCATGTAAAAAGCCACAAG
ATTTTCTGTTCGTCATTATATATGTTTATCCAGTTTTTCATGGAGGATTTCATTAGCGAA
ACAACCAATTCCCTAAGCTAAATCTTGTGCAACAAAATCTCTTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTTTATGCTACAAAAATACGATTTCTTTTTCTTCTGTTGCTTTGATCATAA
TGAATTACACTTGTTAAAAATTACTGAGTTGATGAACACAATGAATGCAGGTATCCTGAT
GATCCATACGACCGGATATGGGAGTCGGACATGGTCCGGCGGGCCAACTACCTGGTCGAC
GCGGCGCCCGGCACGGTCAACGTGTCCACCGACAAGCCAGTGTTCGTCGCCACGAGTGAG
AGGCCGCCGGAGAAGGTGATGCAGACCGCTGTCGTAGGCACCCTCGGCGAGCTCACCTAC
CGGCTCAACCTCAACGGCTTCCCGGGTGATGGCTGGGCTTTCTCCTATTTCGCTGAGATC
GAGGAGTCCATCGTCCCCGAGACGCGCAAGTTCAAGCTATTCATCCCAGGCCTACCTGAC
GTTAGCAAGGCCACCGTCGACGTCGGTGAGAATGCTCCTGGGAAGTTACGGCTATACCAG
CCAGGCTACTATAACGTGTCACTGCCCTTTGTGTTGTCGTTCGCGTTCAAAAAGACCAAC
GACTCCTCCAGGGGACCGATTCTCAACGCTTTCGAGATCTACAAGTATGTGGAGATTGAG
CCCGGGTCCCCGGACGAGCTGGCGATGGCGAGCCTCGCGTCGCGGTACACGTCCTTTGGT
GACTGGGCCAACGAAGGCGGTGATCCCTGCTGGCCCTCGCCATGGTCCTGGGTCAGATGC
TCCTCACAACCACAACTAAGAGTGGTTTCAATGTATGTAATCTTTTCACTTAACTCTCCA
TTCTATTGTTCCCTCATCTTGTGCTGAATGTTTAGTGTATATCTGCATGCGCTTTAACAA
CCTTTAGTTGTGAAACAGAAATCTTTCAGGGAAGAACTTGACAGGGAACGTACCGCCGGA
ACTAGTGGCTTTGACATTCTTAGCAGAAATGTAACAGCTTTCACCACTGCCTTATTTAGA
AAAGGAGGCCTCTGCATCGAGGGATGCATACAGCCACCACTGCCTTATTTATCACAGAAT
GTTCTTCTGATTAAACCATGAATTAATACCTCTATTCCTTCTACACATGTCCTGATTGAT
CATGAATTTCTCTCCAGCCGACTTGATGATAACATGCTGACGGGTCCGATTCCAGACCTT
GCCGCCTCTTCGAACCTCTCAATCATGTGAGTGACCTGCCTGATTTCAGATTTTTTTTTC
ACCTCCCGTTACCGTTGATTGCGTCGTCTTTCTCATGAATGGATGCTTGATTAATTCTCT
GACTGAATAAGAATGCAGTCACTTTGAGAACAACCAGCTTACTGGCAGTGTGCCTTCATA
TTTGAGCAGCTTGCCCAAGCTCACCGAGCTGTGAGTCTTTCATCAAACCCATGCTTACTG
TGTCAAATTAATTGCAGTTGTGGTGCAAATTTCTTGGTCATAACAGGCCCTTGTGAACTG
ACTGTCCGATATTACCCTACATATAATGCAGCTATGTTCAGAATAACAAGCTGTCTGGAT
ATATCCCCAAGGCTCTGAAAAGCAGAGGCATTATTTTCAAGTTGGTATTCTTTCCTTCAT
ACACTACATTAGTTAGCATATATTATTCCAGCAACAGTTATTCAAATAGCTTGCTATCAG
CTACTAATATTTAAGCTTTCCTCACTTTAATTTTTTTCCAGCTATGCTGGAAATATGGAC
CTGAAGGCAGGGAGCCAAGAGAAGCACCACATAATAATCATCATATCTGCGCTGCTTGGA
GTATCCTTGTTGCTTGCAGTTTCCCTCTGTTGCTACGTGCTGACGCGCAAAACCAACAAG
AAGAACCAACCACCAGAAGGTCGCCTCCTCACACCTTCGTTATATTTTTCTTGTAGCGTT
CCCTTGTGTCTGTTGTCAACTCTTCTATAACCTTGAATCATTATTGTTCAGATGACCTTA
CAAAGGCGGCCCCGCCCGCGCACAAACTGCAGAAGTCAAACGCGCCGTCGTGCGAAATCG
CCACCGAGACTTGCCATCCCTTCAGACTATGCGACCTCGAAGAAGCGACCAAGAACTTTG
AGAACAGGATCGGTTCGGGAGGTTTCGGGATAGTGTACTACGGGAAGCTGCCGGATGGAA
GGGAGATTGCGGTGAAGGTGCCGACGAACGACTCGTACCAGGGGAAGAAGCAGTTCACAA
ACGAGGTAGGCTGGTTCAGTTGCCAACATAATGGAAATGGCACACGTGTTAACTTGTAGT
CATTCTCTACACCAACTGATGCTATTTGTTTGTTCAGGTGTCCTTGCTGTCAAGGATACA
CCACAGGAACCTGGTGGCATTCCTAGGATACTGCCATGAAGATGGGAGGAACATCCTGGT
GTATGAGTTCATGATGAACGGGACTCTGAAAGAGCACCTTCATGGTAATTTTATCTGGTG
GATCGCATGTAAAAAAGAAGCCAGAATATATATATGACCAAAGCATATGTTTGTTTGCAG
GGCGTGACAAGCACATAAGCTGGATCCAGCGTCTTGAGATTGCAGAGGACTCAGCAAAGG
GTATGTAACTGTTGAGTAAATTCAAATCAAAGAGTATAATAAGCATATATATATATATAT
ATTCAGGCACTAGTAAGTTTTGTGAACCTGTGGAAACATTGGTGAATTTGGATGCAGGGA
TCGAGTACCTGCACAGCGGATGCACGCCGTCCATCATCCACCGGGACATCAAGACGAGCA
ACATCCTGCTGGACAAGCAGATGCGTGCCAAGGTGTCGGACTTTGGTCTGTCGAAGCTGG
TCGCGGAGGAGTCCCACGCGTCCACCAACGTCCGCGGCACGCTGGGCTACCTGGATCCAC
AGTCAGCATTCGAACCCAAAATTATGAAACCGCAGCTTCAGTTTTGAGAGAGTAATGAAC
ACATGCATTTGTGCAAAAATGCAGGTACTACATCTCTCAGCAGCTGACGGAGAAGAGCGA
CGTTTACAGCTTCGGGATCATCCTGCTGGAGCTCATCTCGGGGCGGCCGCCCATCTCCGC
CATGACCTTCGGCGACCACTTCCGCAACATCGGCCCATGGGTCAGTCATCATCCTTGTAA
TCTATGCATTCATGAATGCATATACAGTACACCTGAAAACAAGGAAATAAAAACGCTGCA
GGCCAAGTTCTACTACGAGAGCGGTGACATCGAGGCGGTGGTGGACCCTGCCATCTCCGG
CGAGTACCGGGACGTGCACTCGGTGTGGAAGGTGGCGGAGACGGCGGTGCGTTGCATCGA
CGCGGACGCCAGGCGGCGGCCCTGCATGGCGGAGGTGGTGAAAGAGGTGCAGGAGGCCAT
CGCGCTGGAGCGTCCCCCAAGCGAGGCGTCGGAGCGGCGGGCGTCGTTCCCGTTCTCGCC
GGCGGGGGCGCGGTCGGGGACGGTGCGGTCCCACGACATGATAATGGACAACCTGATGCG
GGAGGAGGAGGAGTCGAGCTCCTTCCCCAACACCCTCCGACACCCCGAGCTGCGGTGATC
ATTCCATGGTGGACTCGTTTCGTTTCGTTTCAGAAAAAAAATTATCTAGTTTTGTTCATG
TGGGTTCCCATTTTTGGAATTGTAAAGTACGAGGTAGTAAGTGATGTAGGAGTAGCACTT
GATTACGTCTTTTTTTTACTGTACTAGACTAGAAGGAAAGAAAAAGGTGTTGAATTTGTA
TTGGCACGGCACGGCACGGGGAGTGAGGTAGTAGGCAGTATACAAAAAGATTGGTTTTTT
CTGGTCCTGGTCCTAAAAAGAAACTGTTTTTGTTTTTTCTGGTGGGCTGAATCGTATCAC
TGGGCTTCGGGGTGGGCCGAGCGAGGGCAGCGTTGTCAATTCACAGCGAGGGCAGTAGGG
GGTCGTGATTAGGGTTTCCACGGACCGCCGCCGCCGCCGCCGCCGCTAAACCCAAACAAA
CCCTCACTCGCTCACACCACACCTTTCTTTCTTAGCAGAGGATAAACCCAGAGCCTCTCT
CCACATTCGAACCCAAACCCGAGCCGCCGCCCGCGGAATCGAATCTTTTTCCACCTTCTT
TCCCTCCATCCCGCCTTCTTCTTCTTCTTCTTCTTCTTCCCTTCGCTTCCTTCCTTCCCC
GCGCGATCGGTCGATCGATCAATCGCTTGATCGAGTAGGCGATCGGAGCACAAGTAGCCG
ATCGGGGAGCGATACAAGATGTCGCCGGCGGAGATGGGGTCCGACAAGATGAAGATGAAG
ATGAAGATGATTGAGGTGGAGGTCCAGGCGGCGGCGGCGGATCCTGATGACTGCACGGCT
TCCGGCGCCGGCGACCCCAAGTCCTGCGCCGACTGCAACACCACCAAGACGCCGCTCTGG
CGCGGAGGACCCAACGGACCAAAGGTACAATCTTTGATGATTTACCTCCTTCTTCTTTCC
CCCTTCCTCCGATCTGCTCTCTTCATCTTGATCCTTGCTCCGATCAATGCTCGATTGTTG
ATCCGATCCGATCCCGATCGATTGATTGAATTTGATTTCATTGCAGTCGCTGTGCAACGC
GTGCGGGATCCGCTACCGGAAGAGGCGGCGGGTGGCCATGGGGCTCGACCCGGAGGCCAA
GAGGAAGCCCAAGAGGGACGACGCCATCAATTCAGCCGCAGCCGCAGCCGAGGCCTCTAC
CCAGCAGCAGGAGGAGGTCACCAAGCCCACCGACGACGACAAGGCGGTCAGCACCAACAA
GACTACAAAGACGCACACCGTTGAGCTCCACATGGTGGGGTTCGGCAAGGACGCCGTGCT
CAAGCAGCGGCGCCGGATGCGCCGGAGGAAGCCGTCGTGCCTGGGAGAGGAGGAGCGCGC
CGCCATGCTCCTCATGGCGCTCTCCTCGGGCGTAATATACGCCTGATCCATCCTTGATTA
CTTGGATGGATGGATGGATTCTGATCGATCGATCGTGTCAGTCAGTTTGGATCGATCCAT
TCCATCCAGGATGAATATGATGAAGAGGTTGTTGTTGGCATCATCAAATCAATAATCATC
TATGCCATGCTATATGGTGAAGCTGATGATGATGTAGTCCCTAGATGATTAGCAGCACCC
TGCCTGCCTAGCTGTAGCTGTAGCTGTGTTGGTTGCTGCTTACCGTTCTTTCGTTCCTCC
TATATAAGTAAGTAAGTACTCTAGTAGCTAGCTGTGGTAGTGATGGTCGTCCTCAGTCAT
GTTACTGTTAATGTTTGTCCTAAGTATGTACCGTCTGACTTTCTTAATTCGCAATGCAAT
GCAGTGTGACAAGAACAAAGAGCTCTCAAGTCAAGTCAAGTCAAGTCAATCTTGTGTTGC
TGTCATCTTACTTAATCTTCTGTTGTTTTTTTTTTTTGTACTTTCCTGATGAAGCAAGCA
AGCAGAGAGTGGGGCACTCCAGGATGATGAGGTGATGATCATCTTCTTCATATTCCATTC
CTGTGATTGTGATTGATCAAGAGGTGGTGATTGGGCACTCGAGGCAGTAGAGTGTAGTAT
GAATGTTTGATGATTCTCTCTTGTACAGTACAAGTACAAGTACAAGTCCAAGTCCTTCAG
GTAGCAATGAGCTTGCTTGGTCGCTTCAGGTAAACTTTGAAATTGAATGAATGAATGATG
GGTCAGCAGAGCAGAGCACAGCACAAAGTAGGTTGTTTCCCAAGCTGGAAAGGGAAAGAA
GCAGAGCAGTAAAGTCATTCAGTCATCCAAAACAAGGACGGAGCAGGAGCAGGACCAGCA
GCAACGATGAATCTAATCTATTTGAGCATACGGTGGCAGCGTTTCCTCCCTAGAAATAGA
AATGGATTCCTGGTATGCATCGCTCGACAGACAGAAAGACAGGCAGACAGATGCAGCCTG
CAGGCAGCAAAAGTCGACAAGAAAGAATGTTCCTTCAATCCTTCTTCTAGATGGATTGAT
TGTGTGCATACCATACCATACCATACCATACATCAAGGCTTTTGTCGCAACAGTACCAAC
ACTCTTTCTGCAATGTTCCATCATCTTTTTTTTTTTTACATATATATCTCTTTATTTAAG
ACAGAGAGGTGAGGTGTTCAATCATCATCATCTTGTTATCCATGCCATGCAGATGCAGTC
AGTCATCTTGCTACTGCTGCATTACTACCACTAGTCCATACATTGCTACTCACCTCTGGT
GGTCAAATTTCGTGTTTTGATCTTTTCGATAAAGTTTTTCGAGATTTGACCCCGGTTTGA
TTTTTTTTTTTTGGAATTTAACCCTTTTTCCTACCGCCAGAGTCAATGGCAGTAGGGTTG
TTGAAATATATTGCTTGCCTTCCTTCATCAGTTCGGACTTTCGGATGAGTTGGTTGGAGC
ATGAATTCGATATGGTAATTAGAGTAACTTTTTCCTAGATCGAAAGACATGAAAGATATC
GCATGTATCTACCTCCAACCCTCGTCATGACCACTTCCTCCACTCACGAAAGCGCCATGA
GCGCACTCGCCACCTCCCTAGTCTCGTCATCCAACTTTGCCCCGTCATCGTCCAACGCTT
CCCCATCCATGTCGCCCGGACCACCTACCCAGGAGAAGCTCATGAGGAATAACTTCCTCA
TGTGAAAAAGCTATCGTGTTGCCGCAAATCAGTGGCACACAGATGGCTCACCACCTCGAT
TTGGCGAGTCCAACATCGCCAGAGACCCTCACCATCACTAAGGATGGGTAGGAAGAACAA
ATCGCCAATTTCTCACGTGTTCTCTGGTACGCACAACAACAACAAGTTCAAGGTTTTTTT
ATGGGCTCTTTATCTCGCGAGATCCTTGCACAGGTGGTCACCCTCCAGACGCCGGCGAAG
GTATGGGCAGCGGTCCATGCCTCGTTTGCTGCCCAAACCCAGGCCCAAGCCATCAACACG
AGAATTGAGCTGACAAATCTCAAGAAAGGCAACCTAAGCATGACCGAGTATCTTGCAAAG
ATCAAGTTACTTTCGCATGAAATTGCTTGCACATGAGCAACGCTAAGTAGCGTCCAGATC
GTCTCCCACGTTCTTGCCGACCTTGACCTCAACTACAACCCGGTCGTGTCGGCTCTTGAA
GCACGGGTAGAACCCACTACCGGTGCCAAAACCGACAGATCTCGGG