morexGenes - Barley RNA-seq Database

Contig contig_39471
Source Contig contig_39471
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39471 (8026 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39471

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54884	1	892 bp	MLOC_54884.1	Available	Available	None
MLOC_54883	3	3401 bp	MLOC_54883.1	Available	Available	LOC_Os03g61620.2, FRAME:-2, EVALUE:0.0, 13103.m06786 protein expressed protein
CDS Structure of MLOC_54884

CDS Structure of MLOC_54883

Contig Sequence (8026 bp)

>contig_39471 8026 assembly3_WGSMorex_rbca.fasta
CCGCAGGCGAGTGCGGTGGGCGTCGACGGACTCGGGCTGGCGTGCCGCAGGCAAGCGCGG
TCGGCGGCGGCGGACTCGGAGGAATTCTCAGGTGGTCGGGCCTCCGGCGGCTTCTGTCCG
GAGGGTGCCGCTCCTCTCCCCGAATCCATGGAAGCGAACCGGGTTGTGCCCAACACCTGA
GTCGACCTTGTCCATCAGCACCCGTCGGCGCCACGCCCCCTCCGACGACAACGTCCACAT
CTCGATATCATCTGCATCTCCGGCACGACCACGCTGAGCTGCCCGTCCCCCAAGACGGCC
AGCAAAGGTGCCATTCTGGTGGCAGTTGGCGCAACTCCGTCGATGATGTCCCACGGCAGC
TCGATCATCCTCACCGCCCCCGTGTCTACGTGCAGGGTGATGATTCGCAGGTCGTGGTGG
TGGCGGAGGCGTACGTACCAGTGCACAGTGCCCCTAGCGGCCACGGGGTGGGAGTCGTCG
CATGATCTAAACGGTGGTGGGTGCATGGTCCGGTGGAAGGTTAGCTGCGCGGACCGTGCT
CCATCGTCCGTCCCGTGACGAGTAGAGCCTCGTCCGCGACCAGCAGCTGGAAGGAGCGGC
GGTGGTCATCGACGGCCATCACGGCAAACTTGCTGCAGCCGTAGACATCCGCGGGAGGGA
TGTCTGAGAGGAAACGGAGATTGGTGACGGAGGCTGGAAACGAATAGAAAATTTTGGCTG
GAAACAAGTATTGTACAGCAGTATAGAAACACAACCGGATTTTACTAGATGCTGGTAAGA
TACAAGTGTAAGCATTTACAGTCGGAAAAGAAATCCAACATTCCAAACGCAGCCTAACGG
GCTAGCAAAAGCGGTATGTGTGCGTGTGCTATACCGTTGGTGACACTAAGAGGATCTCCA
ACAGTCTCTGTGTTTAATCGTTGGTATAAATATCCACGTCAGCAACCAACAGCACATCAT
ACAAGTTCTTCAATGGATTGCATGTTAACCGTATGTAAAATAATTAAACGGGTCCACTAA
ATGTTGAAAAAATTGTCATGCTTGTCTCGGAGCTTGTGCCTGTACCGTTGCTTTAAATTC
ATACGATTTCATTCTGTCTCTTCTCTTATTATGTATCATGTCATTCAAATCGTCTATGTG
GCAATTTTATCAACGATGATCATGTAACTATTGAAGATGCCCTAAACCGCTGCCCGCTGG
CCGCCGTCCCCTCTTAATCCTGACGATGACAGTGACAGATTAGGCAATCGCAATGTGGTG
TAAAATGTTGGCGGTTGCTGTTGGGCCGTTTCCGGCACGCAACGCAAAGGCGCAACCTCC
ACCTCCACCTCCACCGTCGTTGCGCTCTGCTCTGTCCACTGTCTGTCAGGCGCACACGTC
TGTGCGTAAATATGTAAGTGGAGTTGTCTGCAGCTTGGGTTCCAAGTTCAGTCGCGTTTG
TGCGTAGGTTGGTGACAACTCAACTGACAGCCATGGAGGCACACCACCACCGCTGTCCAT
AGATAGAAATACAAAATACCACTAGACTGTTTGTGCGGCTGCTAGTAGGAGTATTTTCCA
CGATTTGAATGATCCTAAAAAGAAAGAAACACTTTTGTGGATCCTAGCACAACTTTTCAC
AGATTTGCATCATGACCAAATGGAGTGCCGCCGCAGCCGAGCTCATCCCCCGTCCCCACT
CCCACTCCCACTCCCACACGACGGCGACCCGACCAAGTGAGACAAACACAAGCGCACACG
GACCACGACGCCACGCCCGCCCGCCGCTCCGACCAAAACGAGCGCACACCCGACACGGCG
GCTGCCGGACGCATCTGCACAAGCGACGGCACAGCTACTTTTCCTGCTTCTGCCACGGCA
GCCACACCAAAGACACTGGGAGAAATTTAACCAGGCAGCATATTATTTTCCTTTCCACTA
GACAAAAATAACAGACCATCATCCACCATGACTCTCTACCTCTACATACATCAATCAAAC
ACACGACGCACCAACAACAACAAATCAATCAACACCAATGGGAAGGAAAAGCAACGTCGA
GGAGGTCGGCGACGGCCTCGTCGACCAGGGCCTCCAGCAGCGCCGCCGCGACGTCCCTGC
CGGCCTCGAACGACTCCGCCTTGAACTCCACCCACGCCCCGCCGCGCGGCCCGCCCATCT
CCCTGTACACCAGCTCGTCCACCGCCGACTCCTCCGCCACCCTCATCCCGCCACCGCTCA
TCTCTCGGTGCAGCTCCTCCGCAGACAGCTTCGCCAGCACCGCCGCGCCCATGAACCACG
ACCCGTAGCCCGCGTCCAGGTAGTAGGCGCACTTGCCGCTCAGCGCCTCGTTCGCGCAGT
CGAACAGCAGCCTCCGGCCCATCCTCAAAGCCTTGCCGCCGTCTTCCTCGCTGCCTGGCA
ATGCTGCAAGCCTGGAACTACTATTTATGTTTAGTTCTTCCAGCAGGTGAGGGTCCAGGA
CGGCTGAGCTGCCGGACCGCTCGAAAACTGATGAAGACTGCCCGCTGAGAGAGCTCGCGT
TCAGTAGCTCTCTCAGGAAGTCTATCTCGGGATCACGGTCCACGCGGCACGAGCTGCTGC
TTTCTGATGGGTGCGTTGTTTCGGCTGTAGTCACCGTGATTGAAGAGGCCGTGTCAGAAT
ATTCAGACGAGGCGTCCACTTCTTGGGATCCACCGTCCTGTGCAGAACTAGAAGTTGCTG
CCCCTTCTGCCGAACTAAACAACCTTGATTCTGGAAAAAGAGGGAAGTATTATAGAGAAG
GTTATATAAAAGGCCTGTGGCTAGTGCAAAATAGCAACAACCAAGCAACTGTTCTGTAAG
CTCACCGTTTGGATTCGTCCAGCTATCCACGGAGCAGCAGGTTTCTGTTTCTGTTGAAAC
AGAGACTTCCCACGTAGAACGGGGGCTGAAGTGGAGATGCTCTAACCCCACTTGATCGAT
GAAATCATTATCAAACTTCACAGACTGAGATGACTGGCCATAAAGAGAAACTAGTGTTAG
CGTACAAACCAATTCCACTTTACCTGTCATGAATGTACAGAGAGAGAGAGAAATGCAGGC
TCGGCCCTAGCATTGGCGGCACAGTTAGGTACCAGCTTTACCATGAAGTCAGAAGGTTCA
AGTGTTCAAACTACTGGTGTATACAAAGCTGAATTCCATCCCTGTCTCTATGACGCAGTT
CAGTGCTCCTAACTATGCTTATAATTGATCACGTAGGAAGAAACTCACTGTAAGTATATT
GCTCTTACTTTTAATATACAACAAAGATTTATTCCAAGTTGTCTCAAACTTGAAACTGGA
GTACAAGATAAACTAATCAAATGTGCGGACTCTAATATGCACACAGCTACATGGAGAAAA
TACCTAACTTGTTAATGGGAATATGGGATGATTAATCTTCCTGTGTTCAACTCAAGATAT
GAGCATCAAACCTTCTGGCATTAATCATATGATGTTGCTCACAAGAAAATAATGTGCATA
TGACACCTAGTCAACAAGAAGTGTCTCGCCTGACATACCTGACCACTTTTCGATTCAAGA
TCGTTCTGGTAGAATTTGTTTTTTCCATCCTTGAAAGGCTGAGAAGACTCCCTATCATAC
TCAGTAGATGCAATGCTAGATGTATCTTCCGAACCTGGTGAAGGGGCATATACTCGAACC
CCATTGGCTGGCTTAGAATAGGGTGACTTCACCCGAGAGGTCAATTCTCTCAATTTCTGC
TCCAGAAGAATTCCCAAATAATCACCATCTATGTCACCAGGTTTAGTATTCGATGTATTG
CTTGAAGTTGGCTCCGAGTTCAGGTTCTCCATTGACCGTGTTTCCATGGAATGATTGCGA
AATCTAGAACCAGGTAATGATTTGTGAACTGGTGAGGTAAATGTGAAGGAAACAATCTCA
GTGCTGACTTTGTTTTTGTTTGTGGAGAAAGATGACTGTTCATCAGTCCCAATATTGTTC
TGAACACGCCTTTGAATTCTCTCGGCGAGAATTTTATCAATCGACTGGCTTTTCTTTGGG
TTTATCCTCCCATCTGGCAATCTTCTAGGTTTGGGGATTGTTTTGGCTGTAGAATTTGGC
CTTCTGTTTGCATAGTTGGTTGGCTGCATTTCTCCCTTTCCGTTGACTTTCGTACTGCTT
TCAGCGCGGGTGCTGGTGATCCCGGCCTTCCTGGGAGAGGCATTTGTTGAATGCATGTTG
CTTCCCTGTTGGCTGAGTCTTGCTGACTTTGGATTCACCTTGTGCTTAACACCCATAGCA
TTTCGCTTTCTGTTATTTTGCTCAAGCGAATTGGAAGAGCTTGCAGCAGTTTGGTTACTA
CTCTTTTGTTGGTTGCCCCGATTTCTCTCAGCCATGTTATGTTCAGGATCCATATGAGTT
GCAAGTTTCCTACTGTTTTTGCTTCTACCTCCACTCCCTTGGGTACTTGCAGCTCTTGGA
TCTAATGATAATCTACTGGGGGCCTTGACCCTTGCAGCAACTGGAGCATTTCCGTTTGAC
TCTGAGAACCTGGAAGAAGAGGTTGTCTCTGAAGCAACCAAACTTCCATCAAAAGGTTTT
GCTCTCGGTGCCTTGGAAGATGCTGAGGTGTCACGTTTCTTCGCGGCTTGGGACATTTGC
TGGACTCTTACAATCTCTGATGTGTTGAAGGCACGCACAACATTTGCGTACCCAACATCC
CGAGCTCTGTATGAGCTATTACTCTCAACTCCAGGCCCAATAATCCTAGACGCTGCCTCC
ATTATATCAGCGGCATTTCGGCCTGAGGTATGATTAGGATTCTTTACCGGGGAGAACAAC
TTGTGTTGCGCACCTGAAAGTGACCTTTTGGCGAATCTTGGAGGCAGCGCTTCCATTCCA
AACCGGTCAATAGGGCTACTCGGCATCTTATGAGGACTAGGGCTGCCAATGTAGCTTCTG
CCAATGAACTCATCATGGACATTGTTTGTGAAGGTTTGCTGTGCGGTAGAAGGGATTGGG
TAGGGTCCAGATGAGCTTGCTGCAGGCATGGAATCCAAACCCATAAGCCTCGCCACAACA
GTCGGTCCCTTCATCGCACGAGCGTCCTCGTCAATTACTGAGGATGAGGAGCTATGCTCG
CTGCTTTCCCTGAAACTCGACGCATCTTCGAGGATCTGCAGATGTGCAAAGTTTGACTCA
TCAAAACTACAGAAAGCAGCAAACAGAACCACAGACAGAACAAAAAGATCAAACGCCCAA
AAACGAACCGAGTTTGACGGCGTGCTTGGCCTGCTGCCAACGGTTTCCTTCCCGTCTGAC
GCGTTCCCTGCAAAGAGAGGTCGATGTGTAAGTTCAGGCCCCCCCTGTTTTCATTCTGCG
ACAATGAACCAAGCTTTATAGCAACCATTCAACCCACTCTGACTCCTAGAGCACATTTGC
TTACCCTGCGTCGGAGAAACACCCCCGCCTCCGGCGAAGAGCCGCTTCTTGGACTTCTTG
CTCTTGCCCCAATCAAACAGGCTGAGGATGCCATGCCCCTTGGACGCAGCTCTCTCCACA
TCCATCCCTTCCTCGCCACCTAAAACCTGCAAGCGGAGACGGCACGCATGAGCGCATAAA
AACGGAGGAAAAGGAGACGCATTGACTCAACCTAACACAAACGCTTCTGAGACAAGCTGA
TCAAGAAACGGGCGGCGACGGACGAATCCGCCCAAACCCGATCCTCATCTCGAATTCGAG
CCGGAGAAACCCAAAAACCCAGAACGCCTGCACCCGACCGAAGATTCACCAAGCAATGCG
GGCAACCCTCACCTGAGAACGGAGCGCCGGGAGAGGCCGAGGGGGGCAGCGGCCTGGGGA
GGACGCTGCCAAGATCCGCCCTTTCCCCCGGGGTCAGCGGCGCCGGATTCGCGGGGCCGC
GGCGCTAGCACGAGCCAGATCGCCGCCGCGGAGGAGGAGCCCGAATCGAGCCGCGGTGGA
GCGGAGGGTGGCTCGTCGGAGGAGTGGGGAGGGGAGGGGGCGAGCTCCGAGAGCGGAGTG
GAGCAGAGGAGCAGCGTTCAAACGAGCTGCTCGTCCCAACGGCGCCGTGGAGGAGCCACG
CGAGGCGTCATGTGCGTTAGGGTTGGGGCGGATGGGGAATGGAGCCCTGGGCCCTGGGGT
GAAGTGGGTCTACAGCCCTAGGCCTGGCCCATGTTGCTGATTACAAATCTCCTTGTGTGC
CTAATCCCCCTCCAACGGTCTGATTCATAAAACTTCGACAGCCAGCCTAGACCACACACA
CACACGGGAAAAAAAAGATGAAAAGAAAACGCGGGATACAAATTCCAATAATAACATCGA
AAAAACTGGTAAATTTTTGAATTTAATAACGAGATGTAAGACGATGGTTGGGTTTTGGAT
GGTAGTTTTGTGTCGCGGACTTGATGTGGCCTTGGTCTTATGCTCACTCCATAAATAGAT
CGAAATACAAGGTGTTTGTATTTCTTTTTTCGTGTTTCCTTTGACAGAAGCGCTAGTTTA
GCCAGTGAAACAATTTTTAGACTGTGACATTTGTTTGGCAATTACTTCCTCTATAAGCTA
CTCCATCCGTTCCTAAATATAAGTCTTTGTAAGATTTTACTAGTGGACTACATACGGATG
TATATAGACACGCTTTAGAGTATAGATTCAATTATTTTACTCCGTATGTAGACTCTTAGT
GAAATCGCTTAAAANNNNNNNNNTTAGGAACGGAGGGAGTAGAATTTAGATCATCATCTT
ATATTATTAGTTTACGGAGGGAGTAGATGTGGCCGCGATGATCACCCGACAAAAATCACC
TTACAACTAGCGTTCATATAGTGAAGCCACCATTCGTTATGAGATCGCTTGCATTGGTTT
TCATAGCAAGGAGGTGGAGTGTTCCAAACTCTTTGTAGACATATAACATGTTGCTTTTGA
AAGAAAAAATATTACTCCCTCCCATACATATTAATTCTCACTGCTTTAGTACAAAAATGC
AACTACCTCTGATACATTATAATTATCGTTGTTTTAGTATATAAAAATACAACTTCCTCC
GATACATTGCAAAGGTTTCAAGCTGGTACTGTGTTAAAAAAAACAGGTTTTTCAAGCTGG
TACGTATTTTTTTTGGTGGGTGGGTGAGTAGTATTTATTTCGTGGAGACCAAGGGACAGC
ACATGCGGCAGTGGCACCAAATGCTAGAGGCGCGTGACCTCACCTCCCTCCGTGTTTTGC
TCCACAATATATGCTCTTCCCTATACCATACACTTACATGCAGCCCGAGTAGTGTATACT
TTTTTTTTTGCCTAACTGCTGCTACTACTTGTCATACACTAATCAATAATACGGAGTAGT
AATTAATTAACAGCTAAAATCCACCTTTCTCGGCCTTGGCTTAGCTCTGCATAGGTTTGA
GAATGGAGATAAAGTAGTACGTACGTAGAAGTTTTACCCAAGCTGGCCAGGCCAAGCAAT
GGTGCTGAGGCTGACTGAGCAGCCAGGCACTGAAGAGAAAAGATGATACGTGGGCTACCT
GCTGCTGCTGTTGCATGGGCGCTGAACGTAGAGAGCAGGCGATGCCATTGTCATTGCCAT
TATTCTTGGTCGTGTGATCGATCTCTCTCACGTGTTGGTCGCAACCAACGCCACTCTCTT
CTGACTTGTGACACGATATCGACCGGACCTGCGCAGGTTCTAGTCGTGCACTGCACGATA
TAAAAGCCCAAAGCAGGATAGAGAGGAGGACACGTACGTGTTGCTTGCTTGATCGGGGAT
GTTGATTTTTTTTTATTTTTTTTAGACAAGATCGGGTATGTTGATGGCTGGGCTGGGCTG
GGCTGGGCTCTGTTCGGCTGAGCCGGGCCGGTGAAAGTTGACGCGGCGAGGCCAGGCCAT
GGCCGGAGGGGTCGGTTTACGTGCCCGTGGCAGGCCGCAAGTGGCTCGTCATGGCGGGGG
GGGGGGGGCGGGGCGCCCCGCGGCGCTCCGCTCGTTTTTTTTTTTTTTTCAATCACGTTA
ACGGACGCCCCACCCCACACGCACCCACCCGGGGTGCGGCGTGTGT