Contig Data
morexGenes
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Map Locations of contig_39440 (8279 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_39440

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54839 1 973 bp MLOC_54839.1 Available Available None
MLOC_54840 1 748 bp MLOC_54840.1 Available Available None
MLOC_54841 3 2589 bp MLOC_54841.1 Available Available LOC_Os12g42040.1, FRAME:-1, EVALUE:0.0, 13112.m04406 protein OsWAK126 - OsWAK receptor-like protein kinase, expressed
MLOC_54858 5 2758 bp MLOC_54858.3 Available Available LOC_Os04g44110.1, FRAME:-3, EVALUE:0.0, 13104.m04390 protein hydrolase, putative, expressed
MLOC_54842 1 379 bp MLOC_54842.1 Available Available None





CDS Structure of MLOC_54839






CDS Structure of MLOC_54840






CDS Structure of MLOC_54841






CDS Structure of MLOC_54858






CDS Structure of MLOC_54842






Contig Sequence (8279 bp)

>contig_39440 8279 assembly3_WGSMorex_rbca.fasta
CGTCCACAAGGGACTATAAAAATAGACTAGGACTAGGAATCCTAATACTACTAGGACTCG
GTTTGACTTTCTTTCCTAATCCTAAAGAAACAACATGATTAACTTCTACAATCTGGAGCC
TACACAATACACTCTCATTCGCAAGTGTGTTAACTTGCATTGTTAGGGTGTGTGGATTGG
TCAGTTGCAACATATCAACATTCATGTGTTCACCTAGAAGAATATATTTATGTTATAAGG
GGCATCAGGAGAGGAGCGGGTGATGAGTTTCAGGTTTCTAGCTGGATGGGCTGGGTGGTA
TGGTTGGGCCTATTTACCTCTGGGCTCGGGAAAATGCATACCATCCGGCTTCTGACCCGG
CCCAAGTTATACGCTGAAACTCTGATGATGTATTGCTGTCGAAACATAGTTGCAGAGAAA
GAAGGATATGGAGTCAGTTGGCAGCTAGGTATTTGGATCTCTTCGCTTTTTCACAAGCAT
CTCCAAATCGATGCTACTGCTTCTCCTATCATTTGGCTATCGAACGTTGACAAACATGCG
GTTCCTGTTGGTTTTCGGAAAAGTAAAATGAGGCAGACGAGGTGAACCGGATCAAAATTG
GCGAAATAATCGCCATGTTCTGGACAAGTCATGATCGCTGCTACTTGAGAACAATGGTTG
TTTGGTGACAGTGGCAGCAAAGAGAGCAAAGAATGCGATGAGTGAACTTCTATTTCCCAC
GGGTTAGAAAATACAACAAATCAGAAATGAAAGTGCCAATTGAAGATTATGCTTTGCAAG
TCACGATACGGTTCCCAGGAATATCTTCAATCACTCAACCCACTGCTCCAGTGTGCAAGC
ATCCCTCCCCCAACTTGCCGGCCAACCTCTGAACCAGCTGAGGTGCCGTACAAAAGGCGG
GGAAGCATGAAGCTGTGCAGCAATGGCAGGATGCTCCAGAGCTGTTCCACATCAGCAGAC
GCATGAGCGCAGCGGCTCGTCCAGGGCGCCACTGCGGGCTTCCAGCGCTAAGGTTCTGTC
GTGCGAACCACGGTGACCCTGGCCGAGAGGGAGGGTTCCATGTGGCATGGAGGCCGGTGG
TGAATGCCGGTACTGGTGAATTTGGATCAGTTTGTAGTGACGCCAGCGAGTCTGCTCAGT
GGCAGCTGGTCACCAGCTCATGATTGGATCTGTAGCGCGTATCGACACGCGGAATGGGGA
GACACTCATTCCTCACCCAGCACAGGTAAATTCCGATTGCTGTTATGGAACTAATAAAAT
CCATTTTGTGTTGCATAAGTAGATATGTCCTAAGTTCAAATGGGAACATTTACAAATTAA
ATGGCCAAAACAAAGTCTGGATACCCATAATCAAAATTTACGCCTGTCATCCACATGTTC
CTGCAATGGCGTGTGTGTTCTTGTGAAAACCAAAACAATGGTGTATGTGGTGATTTCTCT
GGGATGTCAAATTGAATGTTAGGCTCTTTGCCCCATAAATTGGTGTAACTATTGCCACAG
TGGGGGTTAAATATTTATTGTCACATATCACAAACAAAAGAATTGACCGTGCATAAAAAA
TTACAAACATCATCTTGAAAGATCGACAACCAGTTCGGACATATCGATGGTCCCACGTGT
TGTCTCTTCCAAAGGGACCACAACTGAAGATGATCCTCCATAGCTATGTGTATAGTGATT
ATTTTCAGGATCACTAGCTGAGTGCAGTCGGAGTCTCCTCATCATCTGTAGGCTCTCAGC
AACTTCCTTCATCGTTGGCCTGTCATCTCCCTTTGAGCTAAGGCACTGCACTGCAAGTTC
CGCCATGTTCTCAAGCACCACCGTAACTGCATCATCTATAATTTCAGTGTCCAGCATAAC
AAGGTGTCTCCTCTTATGAAACATCAACGGAAAACTATATGACAATGATTCCTTTTCATT
GAAGTTGTCAGTATATATAGCCCTCTTTCTTGTTATCAGCTCCAGAAGAACCACCCCGAA
GCTGTATACATCACTTTTGTCGGTGAGATGACGACTGATAAAGCTCTCTGGGTCAAGGTA
GCCCAGTGTTCCATGAACAAACATGATGAATTCACTTTCATCCATGGACTTAAGTGCCGA
TGCTCCAAAATCGCCAACTTTTGCATTGAGCTGATCATCCAAGAGAATGTTGGCAGACTT
GACATCCCCATGTAGGATTGTGCGAGATGTCGAAGAATGTAAGTACGCTAGAGCTTCTGC
TGACTGTGTAGCAATCTTCAGGCGAAGATCCAAAGGGATTGGTGATCTACAACCAGCGCC
ATGAAGAAACTCAGATAAAGTACCACCAGGGACGAACTCATAGACCAACATTGGGACATC
CACATCCAGACAACAGCCTAGCAACCTCACAATGTTTCGGTGATTGATTTGTGATAAGAC
TATTATCTCATTGATAAATTCTTCCTTCCAATCATCGCTGATTACTTTGGACTTTTTTAT
GGCGACCTCTGTTTGATCATCCAAAGTTCCTCTGTATACCATCCCATGGCCGCCACAGCC
AATAACTCGATCTTCATTGTAGTTATCAGTGGCTCTCTTTATCTCTTTTTCAGTAAGTAT
ACGAATTGTGTCAACCTGCCTTGACCTCATCTCATCATATAACTTGAGTCCTCCATTTTG
TTTGAAATACTCATCTTTCTCCTTCTTGTGTTTTTTCCTTTGCAATTGCATGAGCAACAA
GCATGCTAAGGCCATCACCACCGTGGCAGAAACACTGAGGCCTGTAAAAATATATTTCTA
GTAAATTTCTGCACAGATTTTGACTTCAGTATTTTCTACTCTTTTCCTTCTAAGTAGTGT
CTAGAATTAATATTATATATGTTAGTATTACATGGGTGTTTGTCATTACGCGACACGCCT
TAATGTAGATGAAAATATGAATCAGAGGTAACCTCTTTACATGATGATACTTACCAATAA
CCATTTTGTCAGCTGGAGAATGCAGAGATTGGCATCCAAAATCTGTACCGTCAGATTTTG
TTCCTTTCTTGCATTTGCAAAAGTAGCTTCCTGGTGTGTTGTGGCAGACCCCATTTTTGC
ACGGATACAAATCTTTATACTTGGTGTGCTGCTTACGCAATGCGCACTCATCTGTGTCTG
AAGACAATAACGAGAACATGCACTCAATAGTCAAACTAAACACACATTATTTTCATTGTT
ATATGTCAGCCGAAGAAAGTTTCAACAAGTAATGAAGCCAACCAGTCAGTTCGCTTTGTA
ATGCTGTAAACTTCCCTATACATTACTTGTTCTAAAGTAACATTACATCATGTGTTAAAA
TAAAAAATTCACAGTAGAAAAGAAGGCCATTATTTTCCAGTTCTTTTTTTTTGGCGTGGT
AGAAATCAAATATGACTATGAGTGCTGCCTTTTGCTACTAGCAATGTTTTTTTGAAGGCT
TGTGTTGAAACCTAATTTTTCATGATACATCTTGTGGAACTAACACTGAGATATGGTTTA
GAATTGCATCAGTTTTGAGAGAATGATCCCTGGAAAACTACGGAAGTTAAATTTGAGTAG
ATATAACCTTGACAGCCGTTCAAAAGATAAGGATTGCCTTCATATCCTTTGGAACACTGG
CATAAGTACCCCGGACCATTGTTCGCGGCCACACAATGGCTGTTGACACTGATGCAGGCA
TAGTCATTGGGCATGTCCTTCCCCTCCTCTGGGCATGAGGCGTTCTTAATTGCCCAGTCA
GCGACAACGGGGGCACCTCTCTGGGCTCGATCATCAATAAACCCAAGTCTGCCGACGAGG
TCCTGCTGCCTGAAGTTGTACCACCCAACCTCCGCCACCATGGCGTAGAAGCACGGGTTG
AAGCCCCATACCTTGCTCTGGTTCATCTCAAACTTGACCCCGAAGGAGGTGAGGTTGGCA
GGGATGGCAGCCTCACAGCAGCCCATCCCAGCACACGGCGCGCCTTCAGTCGTGTTGTTG
ACGCCCTCGCAGTAGGAGTAGCAGCCAGCCACGTACTGGCTGGCGGTGCCTTTGTACCCG
CTGATGAGCCCCAGTGTGTTGCAGCCGATGACCGTGAAGCGGTTGCGCGATGGGGAGGGG
AGGAAGGGCGTGAGTTGCAGCTCATACCCTCCGAGGAACTTGGTGAAGGTGGTCTCCGAA
GTGAAGCAGATGTGATTGACCGGGCTGAGCACGCGCATCTCGCCGTGCTCAAGCGAGATG
TCGGTGATCTCAACCACTGCCTCGTCGTTCCCGACCATTGGCCGCGGCGGATCGATCGTG
CCGTTGCAGGTGAGGTTGAAGTAGCTGCTCAGGCTGGTCGCGGCGCAGTGCGCGCCGATG
CCAAATGGGTATGGGATGGGCACGTCGCCGCACTTGTCGGGGCATCCTGGCAGCGAGACG
GAGCGCCCGGAAGAGGCTCTGGCCAGCGTTGCAGCTGCTGGCAGGAAAATGCTAGCTAGG
AAAACCAGCATAGGTGGACGCTGATTACTCATGTTACATGTTATCATACAGCATACCAGA
CCATGTTAAACTGATTTGTAGTAGGTTTGTGCCTGCAAATAAGTAAACACAAGTTGGTAT
GGTGCTCAAGCGATAAGGTGTTAGTTTGTTTAACTACCACAAATGATATCACTAACCATA
CCACAGCAGGGGAGACCTTGACCCTAATTCTTGGGCCTGTTGTCTCATAGTTTCATTTGT
TTTCGTTTTGAGAGATACGACACCTCTTTCTTTTAACTGAACATCACTATTGATGCTTAC
CGTCCGGCGAAAGAATTCGAGCATGAAAACCGGAAGTCATCCATGCAACAAATAAAGTAC
CTCCTGTCATTGTCGAATGTTTTGTTTAAAGATGTAGTTTCAATCTCATTTATATTGTCT
ATTGTTTCAGGAAACAATGTAATCAACATCAACAAGAGTTGTGATTGGCTTGGCTGGTTG
GAGGGCAAGGAACCGTCGCAGATTGGCTGGTTGGAGGGCAAGGTTTCCTTTGAGGTCAAC
AAGGTGAGAACACACTCCTGTTCCAACTTCTCACTAGAAAAGGAGGAATTTGGGAGACTA
CGCGATACGCATACGCATACGCTTATGCTTCCTGTCTGCCAATGTGTTTGTTAAGCCTGC
GGTCACTGGTTTTGGGAATTTTTGTCAATCCTGTGGTCCTGCGCATATTGAAATTCGTGT
GCTGATCTCGAAAAGTAAATCCAAGCATTTGTATGCTTTATTTGCAAAAATGCATTCATG
TATTGGTTTCTAGCTGGATAGGCCGATTAGTCCAGTTGGGCCTATCTATCATTGGGTACT
ACAAGCCATCCAGGCTGTCCTGGCCCGGTTAGTTTCCCATGGGCCTCGAAATTTCTGTCT
CAATCAGAGAAAAAAACATTGGTGTCTTCTGAAAAGTAAAAAACAAAAACAACCACTAAT
GTTTCGCTAAAAGAAAAACTGCTGGTGCCATGTTGGTGTGAAAAGGCCATATTACTGGGC
CATACAAGCCATCCATGCCGTCCTGGCCCGACCCAGGTTTTACATGGGCCTCCAATTATT
TGTTTCAATCAGGATAGAAAGACAAATTCGGGATCTCTAAAAAAATTTACTGTTCATATA
CTGTTTTAATCTGATTTGTCTTTTTTCTGAGAGCTGTTCAGATGTTCAAATGATACAAAA
ATTAGAGCGGACCACATGCATCAAATTATCTTTCATAAAAAATGATTTTTTTTGAATTTT
TCTAATATTTGTTTTTGACCGGATGCAGATGAGTGTGGACACTGAAACACTCTACTATCA
CTGATATGATACTAAGGCCCTGTTCGGAGTACCTCCGCTCTACAACTCCACTCTGGAAGT
AGATGGAGTTATGGTAGAAAAATGTGGAGCAGCTGTGTCCTAGCTGCGCAGCTCCTGGGA
TTTCACGGAGCTGGTGGAATTCCGAACTCGGTCTAACCTGAAAAAAGAATCACCGGTGTC
ATGTTGGTGCGGAAATGGTGTTGCAACATAAAAATACCATGGAATCAGTTGGCTAGCTAA
GAGAGCTTGTACTTTTCTGTCAAAAAAATTAGAGATCAAAATAGAATAATAATCAAACAA
TGATATAAAATCCGGCCGGCGATGCCAGTGGGACTTAGCCATGAGTGATCAGGAAGACGC
CAGTGGGACTTAGCCATGAGTGATCAGGAAGACGACACTTGGAGCAAAACAACAACAGTC
ATTAGTCTCTGTGTCTCTTAATTTGGCCGTGCACATCAAACAGCTTGTTCCTGCCTGCCT
GTATTACTATGCTAAATAATCAATACAATACAGCTTTGGACCTGTCTCCTCTGCTTAATG
AGCAGCGCCGTATTTGCACTCTGGTCCTCGAATTTTCTCGTCGCTCCATCACGGGCTCCT
CGCATCTGGTCAAAGCTACTGCTCTCCTATCATTTGGCCATCATGAGGGGTGTAGGATTA
GTCTACACCCGTTTCAATACGTTGGCCCTGGTGCTTAATTCCGACATCGACACAATGTCG
ACTGGCTGCGTGGGCACCAATTGGCAAGGATATACGTGTGAAATGTCCTGGCCCCACTTA
CTAATTTGTGCTGTAAACATCACTAGTTTGTGCTCGAAACGTCCATGGATTATCCGTATC
GTGTTGAGCATACATGTATCGATCCATGTCGTCGACGGTACATGTCGGCTCTAATTTTTT
GTACCCATAACAAGAGTTAATTCTGATTTGGACTACCTCGTAGTGACACTTTGCAACGTG
TTTTGGATATATGTAATATTAATTTGTACTGCATTTTATTTTTCATGACAGGAAGAACTA
CTCTTTTCTTTCCCTTACCCAAATCAGAGGCACATTTTCAGTTGCCGTTTACTTGGCGCT
AGGTCCCATATGATCTAGCCACTCCCACCAAATGCGTGCTTCGGGTTCGGAGTTTGGGGG
AGTGCGGCGGAATAAGAAGAGTCCGGTGGGCGAACTGTATATTTGCTTCATTGTGTTCCT
TCGAATCAGATCAAGGGTGCATAGGAGCATTGTGCGATGTAAGGCCAAACCCCAAAACAA
AATATGTTGCGAATCGGAATATAGTGCAAACCTGGCAAAATTATAAAATGTCATGACGTT
GCAAAATGGAATACATCATATACAGAATCCAAAGTACAGTGTGTAGCGGACAAACACTAT
AAAATGTGGTGATGTCGCGAATCGGAATATATTGCAAAATCCAAAATGCAATGACACAAT
TATAGGATCGTGACAAAAAGGTGGTCCAAATAGGAATCAACTCCGAAAATGATAAAACTC
CCAAGGTTCAATCTGCAAAAGTGATCGTCTCCGACGATGGCGATATAAAACCACCGGGTA
TGGCACGCCATGGCACTCTGCATTATTGCGCTTTGCTTCAGTGATTCAGTCGACCACACT
TGAGAGTTGAGACCTCACACCGGCCGTCAGAGGCAACCAATGGCGTCCACGGAGGAGCTG
CCGTCGTTCAGGACGCCCGGCGCCGTGCCCTTCAAGTGGGAGCTCCAGCCGGGCATCCCG
AAGAAGCCGGCAGGCCACGGAGCCGCCGCTACAGCGCCACCGTCCTTGGCGCCGCTGCAG
CTACCTCCGAGGCTCGCGCTGCCGCCCGGCGCCTCTGCACGCGCTGCATCCACCGGCGGT
GCGCGGTGGACATGTCCGGCCTCGACGTCGGCGCGCTGGACCTTCGCTGGCGTGTCGTCG
GCAGCGCTGCTATCGCCGCCACCTACGGCGACTACGACGGCCCCGCGGCACCGGCGGTCC
ATGTCCGCGCGGTTCGCGACGTCGCTGACGATGCCGTTCACGCGGCGGCGTGGCCGGTCC
AGGGAGGACACCGACGTCGCGTTCGCCGCCCTCTACGGCGACAGCATCGTGCAGTAGTAG
ATGCGTGCGTGCGTTCACTAATATATTAGATTGCCTCTATCATACTAGCTCCATCCCGTC
TGTGTAGATTGGCTCCTAGTTACCTGCTGGCAATCACAGATGAGATAGCCGTACCTGCAA
AAGAACAGTATTATTTTCCAAATGTCGAAAAACAGAAGTAAGTGCCTATATATGTCAGAA
TTATGTTCCAGTGTTCTTGTTGGATAACTTCAGCGTGATTGTAACCCTGTCCAATAATCA
ATAAACCTCCGTAGATTCACAAAAATAGTATTATATGTGAATGTCAGTCATTCATGTGCT
TGCAAATGACGAGGGGCACTAGTGGAAAACGGGCATTTGGCCTGGACCCTTTAGTCCCGG
CCTCCCTCTGGGCCGGAACTAAAGGCCCGGCCACGTCGCCCCAAATCGCAATGCCGCCC