morexGenes - Barley RNA-seq Database

Contig contig_39434
Source Contig contig_39434
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39434 (7694 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39434

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54835	1	676 bp	MLOC_54835.1	Available	Available	LOC_Os02g49080.1, FRAME:+3, EVALUE:3e-14, 13102.m05554 protein KH domain containing protein, putative, expressed
CDS Structure of MLOC_54835

Contig Sequence (7694 bp)

>contig_39434 7694 assembly3_WGSMorex_rbca.fasta
CCGCTGCCGCAACCACCGTTTTTGTTTCGAGTTGGCCAACGGCGCCTGCCCCTCTGGACG
CCGCCGCTGCGCGTGTGGACGTGTGGTGCCGTCTCGACGAGAATGATTATGTCCGTCCTT
CCGACAGGCTCCAGCCGTCTGGACTCTGGGCCAAGGGATCGGTCGATGTCGATCGAGCCG
GGACCTCGTGTTTTCATGGCGTTGGCAATGGTTGGTGGCCACTGGGACTTGCGTCGGTGA
GTAGTGTACCCCTGTTCATATCACATGCGATTCAGTGGGTGGGAGTGGATTTCATAGCGT
TTGTCACCTTCGTTCAGAAAACTACCGTTCATCTCTAGATAACCACCAACGCCCGTCTCA
AACCGAGTTCATGCAACGTACTGGTAGTAAATGTGTTGGGTACAGGTGCACTCTCCAGGA
TGGAACCTTGCACGTAAATATGTTAGGAAGATCGTGAGAATGTTGTTTGACAAACCATAC
AACATTTTCTTGAAACAAACTTACGTCTCACTTTATATATAAAGCAACAATCAAAGAGAG
TACATGATGCAAGACAGTGAAGTACCCCCTTAAACAACGTGAATCCCAAAATAACCGTAT
CACGCAAGACAAGCCTACACTATCAAAAGAAAAAACATGAAGAATTGAGTACACCGTTAC
ACAACTCCCTAAAACACAAGCTCCATGATAACATCTCCAGTAGGGAAAACAACGCTAAGC
ATCGCCGTTGTCGAGTTCATCATGGACATGGGTTTTCACCCGGAACCCTGACATGAAAAA
GAACACCATGCCGACGTCTTCGAGAAAAGGGACCATGACGACGTTGGCTGCGACAACGAC
AAAGCGTGGAGCTTTCGCTCGGTAGCTCCATCGTGTCATCAGAAGGCCTCGTGGACATGC
GCGACGGGATCTGATCCCTATACCCGGATATGGGCATCACCACTGCCAAATACAAAGAGC
ATGCTTAAGACACATGTCGCAACATCTCTTGCCTCCCTCACAACCAAGAGGGAAAAGCCA
CCGCCGTGGTGCTCCCCGGAGAGTCAACCATGCAGACCACCACCCCTCCATCCATGTCCG
AGACACCGCTCACCGCCCACATCACAGAGCGGCCACCATAGAAGGAGAAGTAAAATGTGA
CTCCTTTATTTCCTAGCCCGACATCTAAATTTATAAGACAATACATGTTTTAAGGTCTTT
GGTTTGGCCAAGCTTATAGAAAACTATGTATGTAGGAAGTGAATTCTACCCAAAAAGATT
CAACAAAAGACATAAGCAAACACACTATTGGTTGAATTACAATCAAATTGCTTTAATACT
CCCACTGAATGGGAATAGAAGTCTCGCACGAGATCTTAAGTGGTCAATTTAACTAGCGGA
GCATATATAATATGCCACAAAAAACATGTGTTCAGAAACTGCATTCAGCGACGAATTTAA
ATATATTTTTATGGCAAACAACAAATCTTTTGCTAATAAAATCGAAGACCTAAAACCCTA
TGCCATAAATATATTCCCATCCGGAGGAGTATGTTAATATGCCACCAAAAGTATATGTTT
TTTATTGCTTACCCTTACATGACCAATGGTGACCAAAAGTCATGTTTACAAACTTGATTC
AACAACAAATTCAACAATGCAATTTGCAAAAAGGAAAAAAAAAGCAATGCTTTTAGTGGG
CATATAACACATATTTCACTAATCAAATTGAAGACCTACAAATTTGTGCCTCTCACAAAT
CTATGCTACAATATTATCAACGAAATGAGATATGTTTACTCCACTTATATGTAGAAACGA
TCCAATTGTACATTGTATGTAAATAACATAGATGCAACAAATGTTACGAGAGCGACGTTT
CGGCTCTCGGGTGCATCTGCACCCGCGTTGACGAAAAAAATCAATACAAATACTAAAAGA
AATCGAGGTAGACAATTTGATGCGTGAAATCCGCTCCAAATTTCATCTTATTTGGACATC
TGAGCAGCTCTCAGCAAAGAAGACAAAATCTAGGTCTGTGAAAAAGGTTGACTGTGCACG
AATTTTCTGACCCGATTTAGTGTGTTACTACCACACAAAATTAGCAAATTGTTTGAGAAA
ATATAGTCGCGTAGAGTGCATCATGGTTGTGTGGTTAGGTCAAAGTCTCCCTGGTATTGA
GAAACTTTTACCTCTTGGCTGTAACACACTAATCTTTTCTTTTTAGCAAACAAAAGTATG
CGTCCATTTATACGTTCATACAACCATCTCTATGAACATACACATGTACACCCTATCTCT
ATAAGTATCTATGTGAAGTTGAGTCGACATTTCATTTTAAGACTGGCGAAGTCATCAAAT
GCGCCTCGTAGTCGACAAAACATCTCCTCCCACTAAACACACATAGCTAAAAATTCATAA
ACAAATACGAAGACCAAGACTTAAACATTGATAGACTGAAAATATCACTGTTCACCTAAC
CATCCAACCATAAATTGGTTCGTTGTAACACCATAATTGTGAAATAAAACTCTTCTTTAC
ACCAAAAAAAGTGAAGTAAAACACGGATATTCAATTTGGCTCTAGGAAGCATATGCTCCT
GCGTGTTAAAAATACATTTTACAAATGTAAAAAAAAATTGATGTGTTCGTTGACACATTC
AAATGGCACGTGCAAATTGACAGGTAAAAAACTTAAGTATTTTGGACTGTGCAAAATGAA
CAATTCAAACGTCAAATGTTACCTCCAAATGTTACACTTATTTTTTTCCACCAACGAAGC
ACCGCTATCCCATATGACACGAAAATTGACAAGCACAATTGCCACACTAATATGAACACC
TACAAAGAAATTCAGAATTTTTAAGACTTATTTACTATTTACTTTGATTTTACTGTTCAT
TATGGAACATATGCTCTCCAGAGCCAAAAATCCACGTCCAAACACGGATATTCAATTTGG
CTCTAGGGAGTCCTTTGCGAAAATTTATATAATAGTGCAAAAGAAATTCATTTTTCTTTT
TGCAAAGAAAAAACATCTTCATATCTACTTCCTCCGTCTCAAAATATAAGACCTTTTAGG
AATTTCACTAGAAGACTACATNNNNAGCAAAATGAGCGAATCTATACTCTAAAATATGTC
TATGTACATCCGTATGTAGTTAATAGTACAATCTCTAAAAGGTCTTNNATTTAAGAACGG
AGGGAGTAGTTTATATACATCCAGGAACCAAATATCATTCCCCGCATATATCAAACTGGC
AAAATGTAGGCTGGTATCCCCCGCTGCACCGTGGCATATCCAGCCTCGACGTCGAGGTTA
CCGGTCCGCTTCAGGCCCTCGTGGACACATGGACCAAACGGGCACCAGTTCGCTCGGGTC
GGCTCCCTTTGTTGCCTCGCCACCTCACCAATGGAGACGTTGTTGGGCAGACGGACGGAT
TCCTCCTTCCTCTTTTCTCCCAGCGCCAGCCATCGCATCAGCGCACGAAACCTTTTCCCT
TTTCTTCGCCTCTCCTTTTCCTTTCCGGAGGGGACAGCCTGGCTCGACGGCGACGCCCAG
CCGAGCGGTCGCCATTCATCTTGCCCCGCCGAGTAATCGCTCTCGGAGCGAGTTGATCCT
GTCCGGCCGTCCCTGCGTTTTGGAGCTATTTTATTATATATATATATACGTATATAATAT
ATTTTTCAACATGCTGCAGAGTTCAACGAAGGCGTGAAAGTCGTACGTCCTCGTCGCTGT
GTTCACCAAGGTGCTCCGCTGAACCACGCTTCTCTGGCTATGTATGCACGTCTGTTACTC
CAAAACTGCACCTCCGACGGAGGGACCGGCCTACGAAGCCTAGGTGACCAGCGTCACCTT
ACATGTCGGGTGCTTTGTCAATTTCATACTAGTTTCTTCACTAGCGAAACTAGGTCGGGT
GCTGGCATAAGATACACGTTCCGCGTTAATTATTCTTAATGACCGTGGGTGGTGGAAACG
CATATGCAGATGCATGAGGGGAGAAGCTTCATTCATCACACTGTGCAGTGTACGCCCCGA
TGCAAGCCACATGCGTACCGACTGGCTTGTCGCGAGCCTATCGACGCATGATTTCCGCGG
CTATCGGTAGCACGTAAACAAAAGCAAGGAAACTAACTAGCGACATGGCCACGCTACGGC
GACGTTGATCGCCGCCATTCATTCTTATCCAGTGAAGTGAGTTGATTATTTGGCGGGCGG
GGATGGGGTTTGTTTTGGGCCGAGAAATTCGGGTCTGATGGGAAATTCGGGTCAAGCAGG
GATGAAACGTATCAAGAAAATCGGTTTTCTTAAGGTGAAATCAAACATTTGATGATTATA
TCAACCATGTGAGTCAAAGACGCCGTAATAGTAAGGAACACGTGTAACGAGAATATGACA
TCAGGACATGACATTCGGACAAGGGGCTCGACACGCGGCCTCATCAGGTGCCCAGTCGCC
CACTCCGGCCCAGCTACGCACCTTATCAACTTGGTAGGCAGGGCCGGCCTTGACAATCTG
AGGCCCCGGTGAAAGACAGAAAAATGGAACCCCCCTCACAAAAGCACCCTTATCTATATT
TTCATGATCATTAGCATTGTTATTATTTTCATCTAATTGTTTATTTGGTTGTCCGGATAT
ACTAGAGCTAGTTCCTGATTAGTACTAGCAAAACTTTTATTTGGCCTAACAAATTTGTTG
ATGGTCCCTTTTGGACTCTATAAATCCATTTTCTCCTTTTCTCTTTTGTTTCTTCTCATG
CCGAGACTTACACTTTATAGATGATATCTCATAACACAAGAAACAAAGACTACAAAAGCT
ATGAGATTGAACGTTGGAAACAAAACACCTGGATCTAGTTGCCCTGGCTGCGGCTTGTCA
CAAACGAATCCACCAATAATCTTGCAACGACAGCAATACAATTTAGCAACAGGACCGTCT
TCAGTCTCCCCTCAACCCCTCCTTGACGCCGGCCGCCAATCCCCCTCCTCCTTTTCTTCT
ATGGTGGACAGGCAGGAACAAATCGAATAAGACAGGGGAGATCGAATGAAAAATAGCCAG
ATGTTCTAAGAAATTTATAGAAAAGGAATAGGAAGTACTAAACGTTGCAAATTGTTCAAA
ATCAGAAAAATCATAATCTCCTCCTCTAATTATTCCGCCCACAAGGCTATAATCTACTAC
AAGAGAGCAACACATCATTATCGGCTTTATTATGGCAGAGGAGAAGTGAAGAACGAGGAG
TCGTGGAGGCAGAGGAGAACGAGGAGTCATCGAGAAGAACGAACAGGCGTGACTCGTCGA
TTCCTTTATTTCCAGCAAAATTGAAGGGTGCTTATTCGATCAGGCTTTTTTTTGGTGATT
ACTTAAGTCAAGCTGTCGAGACGCAACTAGGCCTTCGTATATAGTACCATGTACCTAGGT
GGGGTCCCTTGGCAAGTGAGGGCCATGTGCGGCCGCACGGGACGCACCTGCTCAGGACTG
ACCCTGTCACGGGAAAGCAAGAAAGAAGCCACACACGTACGACATGGTCCGACAGAACCA
AAGGGCATAAGCCCATAAAAAAAATACAACCGTGAGCCATCTAACCCTAACTTGACCAGA
TTTATAAGTCGAGCTAGGGACCATCTCGGGAGATCTAACACATTTTAGATCATATATAAT
GCAACGGTTTTCATCTATCATTATGTTATTTCTCTTTGCCGCAAGGATAAAAGCATGTAA
TCCGTAAAACTGATGTCCTTCGGTCATCCTTTACGATCGTCAGTGATTACCTGAGCAAAA
CAACCGCCGGAGACAAGAGCAGAGTCGTACTCGATCCTCTTGAGTGCTTGAACCTAAGTA
AAACGTCTATCATATCATCTCGATACACCGCTCGCACCCTTCCAACCAAGTACGTTGTCC
CTCAACGGCGTTGTTGGTCTCAAGTCTCAACAACACCGACAACATGCATAGTGTGATGCC
CTAGTAGTTGAAAGATGGAAAGAAAATGCAAGAAAATTTTCAACACCGATTAATGACATG
ATACCAACAGATTTCCTTTTGAAATCAACGATCGATTCGATTTCAATTTTAAAAAACCGA
TGAACAACGTGACATAAAACACGGGTGATGGCCATAGCAGGCCCCAAAACAATTTTAAAA
AACTGATGAACAACGTGACATAAAACACGCGTGATGGCCATAGCAGGCCCCAAAACAGTG
TCCCTCTAATCACGTCACCTAAAATCCTAAGCTTAAAACAGCGTTGTTGGCGGCAGCAGC
ACGGACAGCTCCCTCAGTTTCACACTCTACCTCGCTCCATGTTCACACTAGATACCTAGT
ACTACTACACAACGCATATACCGATATTCAGCTCGCCTAGTCTTCTAGAAGCAGCAGGTA
AAACGAAATCAACCGGGCCCGATCGATCGATCGATCGATCCCGATAAAACCTCACCAACC
ACTGCTGCATGTTGACTCCCTCGCACGGAGCCGAGCGACTCGCCCCTCCGGAATTCCCCC
AACGTCCCACCACTTTCCCGGCATTTTTTTACCGGCCGCCGAACCGAACCGAACCCGGAG
AGGCGAGGAGATCAGGACCGGGCGCCGCCGCGGCCCCTCCCCTCCCCTCCCCCGCGTCCG
CACCGAACTGTTCACTCACCCGCTCCGCTAGTTACCGCGTCGCGCGGCGCATCGTCATCC
CCTTCCTCCCTCGCTTCCTTATAAGCCCATCGCCCGGCCTCCTCCCCCTCCCCCTCTTCC
TCCTCTCGCCGCCGCCGCCATCCCGATAGAGAGAGAGAGCGTGTAGGCGCTGGGCGAGCA
GGCCGCCACCGCAACCCTAGCCAGCTAGCCCAGCTAACGCCGCCGGTTGGAGAGCTGCTG
CTGCTGCAGAGATGTCGTCGGGACGGTACATGGCCTACTCGCCCTCCCCGTCCACCACCC
CGCACTCCCCGCGCATCTCTGGCCTCCGCGCCTCCTCCGCCGCCGTCGCCGACCAGGAGA
AGTAAGCTCCCTCCTCCTCCTCCCCCCAGCTCCCCGTCTCGTCGTGTGTGCAGCGGACTA
GGCTAGGCTAGACTAGACTAGAGGGTATGTGTTGCGTGTTGTTGGAGTGGCCGCCGTCGC
TGACTTTGGGCGAGGCGAGGCTCCGATCGCGCCGGGGAGGCCAGATTCGGGCCCTCCCGC
CGCCGATTCGGTGTTGTTTGGGTTGTCACCAAGGTTCCGCTCGCCGCTTGAATCTGATTT
AGCCCGGTGAGGTACAGGGCCTTTTGGGGATCGGATCTGATTCCCCGCCGCGAGATCTCC
CCTTTGCGGCAACCATTGCGTCCTGTCGTGGTTTCGCTGCTTGAATCAAACATGCCAGCC
GCTCACCTCGGCCGGGGTTCCCTTTGCTGATCGGCTTGTGATTCTGTACCTCTTGATCCA
GGGGGGATTTGCTGGTTATTCACCAAATTAAAGCTGACTAGGCTGTGCTGTACGATAAGT
GTGGCAGATGATGAGTAATAATGGTCCTTTGTTTTTCTACCAGGTACCTTGCGGAACTGC
TCGCGGAGCGCCACAAGCTGAACCCGTTTGTCCCGGTGCTCCCTCATAGCATCCGCTTGC
TGAATCAAGGTGAGCTCTCATGTAATCATGCCATTTGTGTTATTCTGATATAGCATCTGC
GTGCTGGTCCAGTTGCTGCCTCTTCCACACGATTCGGAATATTCTGTCGTGATGGCGAGA
ATATTTGACTTTCG