morexGenes - Barley RNA-seq Database

Contig contig_39356
Source Contig contig_39356
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39356 (7143 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_39356

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54749	3	2494 bp	AK365785	Available	Available	None
MLOC_54748	1	1183 bp	MLOC_54748.1	Available	Available	None
CDS Structure of MLOC_54749

CDS Structure of MLOC_54748

Contig Sequence (7143 bp)

>contig_39356 7143 assembly3_WGSMorex_rbca.fasta
TTATGCTACGTTACCCAACAGATACTACCTAGATGATGGTATATATCATCGGTGGTCTAT
GATTGTCAAGACAATCTTCGAGCCCATACAAGAAAAGAGGACTAGGTTTGCCAAAGAAAA
AGAGAGTGCTAGGTAGGATGTGGAGCGTGCTTTTGGTGTGCTCCAATCTTGATGGGCTAT
TGTTCGACACCCTGCTAAACCATGGAGCCTTGAGAAGACATGGGAGGTGATGGCATGTTG
TGTGATCATGCACAACATGATCATAGAGGATGGGTGTGATGACATCATCTTTGACCAAGG
GTGGGATTTCCAGGGTGAAACGTCGAGCGTGAGTATGAAGCAGCAATGTTTTGCACATCT
CATCCAATTTCATCAAGAAATGTGTGAATGGAAACTCATATTGAACTTGAGAATGATTTT
GTTGAGCATATGTGGACTCACGTAGGCAACCAATAGATGTACCTTTTAATGTATTTGGTA
AAAAAAATCATTTGGTTGTAAACTATGAGTTTTTTACTTATTGTTATGTAAAACAATGTG
ACTTATTTATTCAATATTGTGTAATGTTTTTATTTGTTTATTTGATATATATGCATAGAA
TGTCCAAATTAATAAAAAATGGGAAAACAAAACTCGGCGTGGCGGACCAAATGGGGGCGA
ACGTCGCCCTTATAGACGACCCAAACAAACATAAAGCGGATCAAATTCGCGTGTGTGTGC
GTCGGCACCCTCTTGGTCAAGTGAAGGTCTCCTCGACGCAATCTTCGTTCGTTTGGATGT
CTATCTTTATTTTTGGCGTGTATAGTATGAACCTCTTAGTCAGGCGTGCAGTGAAGGGGC
ACACGGCACCGAGCTCATGCAAGATACAATATGACATGAGCTCACGCGTGTTTTCGGAAA
AGCGGTGGGGGAATTGGGTCACCTCCTACCGAATCAGTTGCCCTATTTAGCTCTCTTTGG
CTCACCACCGAAACCACAACCATCATTTCCCTGCCTAATCCCCCTTCCCCCTCGAGCACT
TCGTCTCGGGCGACTTCATCACTAACGAGAAGGTAAGCAATGCATCTTCTTGAGTCAGCG
ATAGGCTGCGGTGACGAACGTTCTACATCCTCTTATCTGAGTTGTCCTGCTCCACCACCC
AGCTTCACCAATGGTTGTAAGTTTGATCACTCCCTCCTCCCTGCTCATTCGAGATTAGAT
ATGTGAGCATGTGGTAATATAGTAGAATGTAGATCTATGAGTATGTGATGTTGTGGTGGA
TCAAATTGTAGTGGTAATAGATCACTAGCATGCTAGATTTGGCTTGTAGGCTTTGATAAT
GTTCGTGTTGTTTTCCATGTCGGCTTCAATGACACTATGGTAGATGTGGTACTAGTTTGA
CGCTTAGAGCATGTGCAGTATGCTAGTATGCAAGTATGGTTGATATGATGTGTTAGTGTG
TTGAACTTAATGGTTTGTTTTGAGGTTGAAGATTAGTCCATACGCGGTGGTTAAACTTCA
TGATTGGGGCTACATGTGTAGTATGTTTTGTCTTTCCTTTTGTTCATGTGTAGTGTGTTG
AATTAGTCCTAACGACAGTGATTGTAGAATTTGAGCATCTGAGATTTTAGTAAGACCATT
GTCTTGTCCGGCAACCATTTCATGATGTCCTATGTTGAGGACTCCTAACCTTGTCTATAT
GCCTCCAAATTCAGATGTGTTCGAGGGCCCTATTAGGCAGCTATCATTTGTGTGACGATG
CCTATTGATGTTGCACATCAAGCATCCATAAGGTTGGGAAGGTAAACATGTTTGGAAAAG
AAAGCTCAATGAAATGACATCCTTACATGTCCACCTTCGTGTTTAACAAGATGTGCGAGA
TCATATCCACTATGGTGAGGACCCACAAGGGTCTCAAAAGGTGCACCTGAACTCTGATAA
AGAAGGTCTTCAACCAAGTGGTAACCTCAACCCAAGTCTACAACCACCTCAGAAAGTGGA
GAGCCAGATGAATCCAAACGTCCAGGTTCAAAGATCTTAGCGATGCACAATGAGATCGTG
ACACCTTCACGATTCTATTGGCGACACAGCGACACTAAGGCCACACCACAGTTAGGGCAT
ATACAATGGTTGATAAGACAATCTTATTTTAAGCCATGCATGTAATTTAGAGATGACAAT
AAAAGCATGTCTATAATGGGTTATCTCTTAGCCTTATCTTTAATAACTAGCTATTTCTTA
AAACATGATGAGACATATTGTGTTAAGAGATCGTCTCTTAAATAAGAGAAGACAAGTCTT
TTCTTATGATTTCTCTCTCTGTCACCTCAACCATCAACTTTTATCCTACATGACACTTCT
AAGATATCATCATTGTACTTGCCCTTAGCTAACATACCATTACGACTTGTTTAGCTTACT
AACATGTAAATCACAACTAATAATAATGTGTTTCTTTCTTAGCACCACCCTAAGGATGTT
GAGTTCCTCAACACTTTAATGTAGAACTACTAGTAGATGTAGTAGATCTTCTTTCATGGG
GTGGCTATCAGCAAGCATGCCATGGGCTCCAATGAGCCTCTCAGTTTGCTATGCATGAGT
ATTTGTACACGAGGAGTTAGAGACCATCGTCCTTGATGTCTGCTGATCAGGGTCCTGCTG
TTGAAAGAAGGAAGAGAGACAATATCCTTCATGACTGCATATCACAGTCCTACTGTTGAA
AGGAGGAGGAAGAGGGGCAATTTGATGGACAAGGAATTGAGAGTTTTTAACAACATGACC
GAGATTGTTAAGGAGGTGGCAACCACCATCAAGGAGAGCAAGCATGTTGACGTACAACCT
GCCCTCTACAATTCTGTCATGGACATGGGTGGCTTTAATCAGGAGGCGCTGATGGTGGCT
CTTAGCCAACTGCTAGACAACAGGGCATATGGTCTTAGGGTTTGTTGTCATGGGGAAGAC
CATATGCAAAGCAAGCTTACGTTTTATTTTGAAAGCCAAACTTACGGTACTTAACCCAAT
ACTATCGTAGCTCTCTTAGTCAAGTCATGGCAAATTATGGACACCATCTAAGCCCAGTTG
ATAGAAATAAACAAATATGTGCCACTAGACACTAGTACAGAAAGACCAGACAGATATACA
CATGGCTGTAAAGTTGTATCTGATCTTAAAGGTTGGATATGATTGCCTAATCCAAACACT
GTCTTTCAAGCTACAAAAGCAAGTTTGTGATAGTTGGAAGAGGAGCACGAGATCGCTCGA
CTCCACTCAAAGCCACCTAGGGAGGTTAAGAAACTACCAACCACCTCAACAAAAGGGATA
GATAACCACTAACATGTGCAGCCAGCAACCATAACTTGACCCACACACCAACCCAATCCT
TTTTTACTAATCATGACTTCATTATCAATCCATCACATATATAAAGGGATATAACCAGGG
GCCACCCAACTCTACTGTGCAGATAAGATCTTGAGAGGGCACATGATCGAATAATGGGCA
TTGTTTTTTTTACTGTAAATTTACCTTGAAATCATTAATCAATCGTCAGAATGAGTAGTG
TGTTTGACAGTGTGCATGACCCAATTGTTTACATTTTTTTGATAAAGAGTATATATTAAT
ATCACGGAGATACCGATTGTTTACATTTGATTTTTTGTAGGACACTAGGAGAGAATAATC
CACTTAATGGTATCCTCCAAAATGATTTTAAATCCTCTGTTTATCTACAAAAAGGTGCAA
AAGTATGAACTAGTATAAACACTTGTGTTTATACATTTCACCGTAGCCATGACCCATGAA
ATCACTGATGTTTGTGCAAAATGTGGTGGCGGGACAAATGTAGGCAGCTCCTACCGCCTG
ATGTTCGACCTTTCAATTGCCTGACAGACTGGAAACATGTGACCTCATGTGACTCGTTCT
TTCTTTTCTTAGTATGCAATGATACCAAGATAACAATAGTTTCTAAAGTGGATGGATGTC
AGCTGTTGAGATGCGGGTTTAGGAAAGTACTGATTCATCTGGTAATCACACCCTGGACCG
TTTCAAGTACACCATGACTGCCGTGCCACTGAGAGCAACTGCACCAGCCATGAGCCCAAT
TTTAACAGAAGACACACCATTCCTGCTGCGAGGTGCTAGCTCCTGTAATGGTTTTACCGC
CTCTGTGTTTGGATTTGACTCGTCCTCGATATGCAACTTGAGAACCTGTCAGTGGAATTT
TCACTTTCATGAGAAATCAAACAGCTAATAGTTGAGGAGTCATGCAACTCGCAATATCGC
AACATGTCATCCAAGAATACAGAATACCTTCAACCCAGATGATTTGGCATGGAGCACAGC
GCCAGCAAGATCAGTATCCGTTGTCAGCAGCACCCGGTCGCCCTCATCATCTTCGTACTA
AATTCCAAATCACGATTAAAATTAAGCTGGGCAGTCCAGGCAAATAATTTACTAACATGT
GGGGGTTGATGAATGATGAGTTGATGACAGAAGAATGACCCTTGAAATCCATATGTAGCA
TGGCCAATGAGGTACAGCCAATGGTGTAAGGTATAGGCATATAAGAATCGCTTTCATCTT
TAATTACATAAAGGCAGTGATTTCATCACTGGCAGAGGGAAAGCTTGACCTTTACTATCA
GACTCAAACACCTAATCTCTGCATGCCTACTGAAACATTTGAATGCTTTCATGTCAAATT
ACTTAATCTTACCAAGATTTGAATGATGTCCTTTTCATCAATAATACTCAATCTTTGCCT
TACAGAGGAGACAAGCTCATCTAAGCTCTCCGAGCCTGTAGCAACAACATAAAAGTTTAT
TTTATGGAAGATAACATATAAATAAAGATCCAGGTTATATCTGGAGCATGCAACAAGGTT
CAACATATTTGTGCAACCTATCAAGTGAGCACTTACCACAAGTGAATCTATGCACACGTC
CCTTCCGGTCTTGAAGCTTAAAGGGAAACGAATTACCAATGATAGGGGGGTATATACTAC
TCCGTCCATCCCCAGCTTCTGACGCCATAAGTAAGGATGCTTCGCTGAGCAATGTATGAG
AGCGTTGTATTAGGGAGAAACCAAAAGTATATGCACAGAAATCCACAAATGAACCATGGA
CGAACCTACGGCTATCAAATTCGTCATCTGGAGCCTCCAAAGCAAGCGCAGAGTCCCAGA
ACCTCTGCATTACTGAGTTTGCCACGTCATTAGCAGTCCCATTGCCCCCTTCAACCTAAA
AATAAATAGTACATTGACGAAATTAGGATAGGAATCTTTGGCAGAGCTTAAGACAAGGGC
TGGAAGGAGTAAGGGATCACCAATTGAATGGCTGCATGGGTAAGCTGCAGGACATCCAGG
CAAGCAGCAATTTGCCCCTCTGTTCAAAAAATACATGTACCAGATGAAGCATCTGGCAAC
TTACGAGTTATTCACTTCACAGGCTGAGATAAGAATTGGGTCATACCTCTGTCAAGAACA
GGAATGTGCAAGAATTTGCCATCATGCATTATATGTAGTGCGTCAAGAATTGTCGTGTCT
AATGTAGCACAATCAGGGTTTGCAGTCATCACCTTTATAAAATTCACAACTAACTCATTG
AGTTATAAGTAATTATACAAAATGAGATGCCATTTGAAGAAAGACAAGTGTCATGTAGGG
CGCGGATACCTTTTCTACCAAGGTCAACTCTGGGGAAAGATTCTGTGACACAACACGCAT
AAGAACATCTTTGGACCTGCATTTGAGAATCAATATCTATCAATAACTGGAAAGAAAAAA
TAGATAAATAATAACAGTAGTATGATGCTACTACAGAATGCTTACGTAAAGATCCCCTGC
ACTGTGTTCCCTGTAGTGACCACCACTGAATTAACTCGAAACTCCCGCATTTTCTGTGTC
GCCACATACACAGGATCTGAAGGGGAAATAATTGCTACCCTGAAAGTTGACATCACACTA
ATTCTCACTATCCAAACATCTTGCAGTTGAAAGGAAATCATCACAACAGACAAAATACAT
ACTTTGTGCCCTCCGTGACAATGGTTGACAGAGAAGGTTTGAACATCCGCTCTCTTAGAG
TTTCTATGAAAGCATAAGGAGCTGTATGCAAAAACAGTTAAGACCTTAAATTGATTGGTA
AGACAGAAATACACCAAAATATAGTTCTTAAGGACAAACAAGTGTGACAACCCAATCGAA
AGGGATCGAGATCTCATGTCAGAGAGTAGATGAGGAAAAGGAGAATAGCTTGCACAGGAA
GAAGGTGAGAGAACAGGAGCAGGTGGTGAGATTCAGAATACCATCGTCAACTCCCATGCC
CTGTTTCCGGTTACACCACACACTTAAATAACACAACCTCCCACGGCTAAGGCCTTGCTC
ACACACTGAACCCAGCACCGGCAAGAAGCTCTCTCCACAGCGGGTGGTAGGCTGTTGAGT
ACAGTAGCTGCGTGCCCATGTCAGCGCCACTGCTGACAAAGCAACAGAACCTCCAACAGG
CCGCCTCGGATCGCACAGCCCAACAGGAGATACATCGGGCCCAAGTGGGCCACCTAGGGC
TCGGCGCAATCCAACCGCCAGCTACTTGTACCCCCCAGCGCGTCGTGTCTGGCATCCAGT
TGGATCAGAACGAACGGCGGCTCTCTTCCCCTCTCTTACCTTCCTTCCTCCTACCGCAAG
ATCGACTGGCTCTGCGAGAACTCGAGTTGTAACCGAGATCGATGCTTGTATCATGTCATG
AACTATAGATCGATTGGCTCCTAACATCCTAGTATCAGAGACGACCACCACTCCTCCCCG
CCGCGCCCACTCTGGAGACCCGGCAACGCATCCACGCGCGGCAAGTCTCCCTCGCCGCCA
TGGATCCAACACTCAAGGAGTACCTGGACAAGCCGCATCAGGACGCCAAGACCGACTCCG
TCTTCGTCCTCAAGCAACTGCAGACGCAGTCCTCCCAGATCGAGGACCTGCTCCCCTGGA
AGCCAGATCTTGAAGCCCGCTACGCGAAGCTGGAGACCACGGTCACCACTCTAAAGGCCG
CCGTCGTCAACTGGAGTGACGCAAGCCCTCCCTCCGCTGCTTCCTATGCGAGGAGGAGAT
CTCCACGGGCCAAGTGACCACGGCGACACTGATCTCACCGCGCGCGCGCGCGGGGGGGGG
GGG