Contig Data
morexGenes
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Map Locations of contig_393454 (6183 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_393454

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54732 1 559 bp MLOC_54732.1 Available Available LOC_Os07g30200.2, FRAME:-2, EVALUE:2e-47, 13107.m03043 protein tRNA synthetases class II domain containing protein, expressed





CDS Structure of MLOC_54732






Contig Sequence (6183 bp)

>contig_393454 6183 assembly3_WGSMorex_rbca.fasta
AAGCCCCAGTGCATAGCGGACGGTTAATGCATGCTGATAATGTCAAGAGAGGCCGGGGTA
GACCGAACTTGACATGGGAAGAGTCCGTAAAAAGAGATCTAAAGGATTGGAGCATCACCA
AAGAACTAGCCATAGACAGAGGTGCGTGGATGCTTGCTATCCATGTGCCAGAACCATGAG
TTGGTCGCGAGATCCTATGGGTTTCACCTCTGGCCTACCCCAACTTTTTCGGGACTAAAG
GCATTGTTGTTGTTATTGTTGTTGTTGTTGTTGCTACATATTAGATATGAACACAACAAA
TCAACACTCAGAAACACATGGTGAGCAACATTCCACACGACAAGTAAGTTTAAAACATGC
CTAATCTATCTACAAAAGCTTATTGAAGAAGTACTAACCAAAGTAGTGACATAGAACTGC
TCCCCCGCTCCTTCACAATCTGAGGCAGTAATAATAGGGCTTGATACCCAAATAAATCCA
TTGTCTTGAAAAAAATTATGAGTTGCATATGCCAGAGCATTTCTTACTCTTGCCACCTAA
ATGAGCACCAAAGGTCGGTAAGAAATCCACATTAGATATTTATATGGTAGGGAAGAAGCA
TATAAGCCCTAGCTAGCATCTTACATTTGTAACTGCATCACAGGAAAGACATGCTCCAAA
CAAGAATTCATTTTGTGTTGACACATAAAACTATCAACATGTCCATAAAAACAAGAGAAT
CACACACCTTGCCTTGGCATATCCATGTCTACATGGCTCTATAGTCTGCTGCAGTCCTAC
AGTGGCTCTATAGTCGCCTATTCTGAGTTCTTTGCATAACCAACCATGCTATAACTTGGT
AACTTGGTAACTTGCATGCTAGCTTATACGCTGATTTAATAGAAACAGCAGGCAAGTTTG
TGGTCAAGTAATGGAACAAAAGGGCATAAATAATATCCACGAGTCATGGCTTATGCATCT
CTAAGCTAAACTCAAAACTCAAAACATTATCAAACTTGGTAATTCCTCAAGAATAAGGAA
AAGAAACAGAAAAATGGAAGAGCAAGCAATGAATAAGACCATACGGCACCAAAAGTGTTT
GTCCGAGGACGGAGGTGTGCCACAGTCCTCAGAAATTCTCTTGATGCTCGTTTCTTCTGT
ATAGGAAAAGATGTGGGATCACTCTCCCCAATCTGCAAGATGAAAAGGTAAAGAAACTAT
ATCAGAATACAAAATAAAATAAAAACAGAAGTATGTTTATGTGTCATTTCTGTCTACAGC
CTGACAAAACAACAAGGCAACTGCAGATGCACAATCAACATTATCAGTTCATCAGAGTTT
CCTAAAGATAGCAAAGAGGACAAAGTCTTCCTGGCATGTATGTTACCCATTAAAAAAATA
TTCATCTTAGGAGGCTTCCCTTGTGAAACAGACTGGGTAAAGATGGGCAGACAGTGCAGC
CTAGTAAATTGGGTAGTAGAACATTGGTTAAGGAGGACAAATGAGGGGGATGATATACTG
ATAGCTAGTGATGAGGGGATGCCACCCGGGCATGCCAGTGGAGACCCCAGCCAGGCACCA
TGCGTCCATGCCTTTTCTATCAAGGTGCCGAGTCAGCCCCTTAGGCCCAAGCATCAGCCC
AGGCCGCACCAACTTGGGAGACACCGAAGCAGGAGATCACTAGCGCACGGCATAGTCCGG
CGGGACCAAGGGGCGCGAGCCCACCGGCCATCCGACCCCCGCTATGTAACCCTAGTTCGG
CCAGGTATATAAGGCGAGCTGGGGACCTTCTGTAAGGGATCCAACACATTCCAGATCATC
CTAGAGCTAGGGTTCTCACCTACCACCATCCTCTTCCTGTCCGTGCCAAGGTCGAGAGGT
TTTAACCCAGGAAACTGATCTCTCGGCGATCCTCCCGATTGTCATTGAGTACTCAAGCAA
TACAACCACCAAAGGAAGGAGTAATGTCTTATCTCCGCCCGAAGGGCCCAAACCTGGGTA
AGTCATGTCCTATCTGTGGCAATGACTCACCCAATTACTCTCCTATCTGTGGCAAGAGCT
TTCATTGACAACATCTTTAAATTACATAGGCTTCCTCGTGTGATTGCGACAGACAGACAG
GATTTTTACTAGTGATTTGTGACAGAAAATGTTTAAAGCCATGGATGTCAAACTCCACTT
CAATACATCATACCATCCAAAAACTGATGGTCAAACAGAAAGAGTGAACCAATGCTTGGG
AAATTACTTAAGGTTATGGCCTTTGCACAGCCAACTAAGTGGAACAACTGGCTATCTCTT
GCTGAGTGGTGGTACAACACAAGCTACCACACATCCCTCAAAATGACACCATTCCAAGCT
GTGTATGGTAGACCTCAAATATGATTGCTGAAGCAGTCTTACATCCTCCTGAGCAAACAC
CAAATTCTATTCTCACTCAGGAAGAAATTGCCAACAAGCAAAACCTGCTTAAAGCTACTG
AAAGAATGAAATGCTTTGCAGATAAGAAAAGAGTGGAAAGAGTGCTGTCCATGGGAGACA
TGGTCTATATAAAACTCCAACCTTACAGGCACACCTCAGCATTCACAAACACTTAGAAGC
TATATTCCAAGAACTATGGGCCATTTAGAGTACTGACAAAAGTGGGTGTTGTCTCCTATA
GGTTACTCCTTCCAGATAATTGCAAATTACATGACACCAATTAAAGAAGCACATTGGCAC
AGCAGCTGTACAAAACCCATAACTGCCCCTGCTCAACCCAGATGGCACAATTCTCATTGA
GCCTGAAGCTCTGCTGGAGAGAAAGCTCATACCAAGGGTGCAGGGAGAAATCAGCATATT
TAGTGCTGCAATGGTTGATTAAGTGGAAGAACTTGCCTCAAGAACAAGCTACTTGGGAAG
ACTCTGTTAAGAGTTATATTGATGATGGCCTTTGGCCTTTTGGCACTCTCTTGTACATGT
ATATATGTTGGCTTTGGCCTCCTAGTAATACAAGTTGCATATTTCCAATATGGTGTTAGA
GCTCTAGGTTTTTTTCACAGGCGCAACTTGTGCTCTCCTGATCCAAAATTCCTGCGTCGG
CTGTCGCTGTTCCTCTCTCTCCGGCCGATTGCTGTTCGTAATCCAATCCGCTCATCTGCC
CACATCGAGCTGCCCTGATCTCCTTCAATACACGCCGCCACCTCCTAGACTGTGTCTGTC
CTAATCAACACGCTCGCCCCGAGCTGCTGCACTCGTGGGAGCCTCCCGCACGAGCCCGCG
TGCTGCTTCGTGTTGCCGTGTACTACAGCTCGATCCGCTCGTGGGAGTAGCAGCTATCGC
TGGATCTTTGCCGCTCCCGTCCGTCCCGAGCACCAGATCGAGCCGCAGCCCATCCAACAG
CCACCAGCAGCCGGACCAACTCTAGCCGCCGATTCCCGCCTTCCGCCGTCGGATTCTGCC
ACTCCCGCTGGTCAACGCCCTCTGCTTCGTCCCACCAGCAGCTCCTTCCCGATCGCTGCT
CCGCCTGGTCTTTCGTTGTTGCGTCTGTTTCAATATCGATCGAGCCTGTTTTGATAAGAT
CGAGCGCTCACTTGGGTCCGCCCCTCTGGGTCAATCTGGTCTCCGTTCGACTGGCCTCCC
GTCTAGATTGATATGCCGCTGCTCCTGAACACTCTCGTCCAGGCCCATCTGGTGTTCAGT
TGTTTGTAATGGGGCTTTTCTGGTGTGGTTGACCCGATCCAGATCGGTTGAAAAAAATAT
GCTCTCGTCAGGGTTGGTCTTTCATCCTCGCTCTCTGGTGATTTCCGACGGTGTTCCCTA
CATTGACCCCGTCTCGCACATAGGTCGTCGCTCACTGCTTGGTGCTCGTCGTCTATGATG
TTGTTCAGCGGGATGTGCTAGTTGCTATTCGTCGACTCTTCTCGCGGCGCCTGCCCGTGG
TAGTGATGCCCGCTCTACGTCGACTCTTCTAGCGGCTTCCACGCGTGGTGGTGGTACCAG
CTCTACGTCGACTCCTCTCGCGGCTTCGGCACGCGGCGGTGACCGCTCTATGTTGATTGC
TCTTCTGGCTTCCGAAAACAGCGGTGACCGCTCTACGTCGACTCCCCTAGTGGCTTTCAC
ATGCGGCTCTACATCGACTCGCTACTCTCAGTCGACTCTACATGCGGCTTTCACGAGTGA
TGGCGATTGCTCAACGTCAGCAGGTGTTTCTACCTCGTCCTCTTCCGCCATGTCCCTGTT
TGCGCGTGAGATTGCGCAGCTGTGATGCCTGCTTGCTGCATGGAATTCTTCACCGATGGG
TTCTGCAGGTTCCGTGACTGACTCTTCTGGCATTGAGGAACCACCTTCTACTCATTCAGA
TACATCCCCATGGATTCTTGATACTGGAATGTCTTCTCGTATGACTTATGATTCTTCCAG
TTTGACCTCCGTTCGACCTGTCGAGTCTCCTGTTCGTATCCTTATCGTTGATGGCACTCC
CTCCCTGTAGCTAGTCGAGGCACTCTTAGCACTCCTTCATTTCATGTTCCCTTTGTCGCT
CATGTTCCTCAACTTACCATGCAACGCATATCTGGTGCTCAGATTGTTGACTCTGGTTGT
AGGGTCGTTATCGACTTTGATTCGTGTTCTGTTCAGGATCGCCGCACGGGCGCTCTGCTT
GGTGTTGGCCCTTGACACTCTGATGCTCTAGGAGCTTGACTGGCTTCGCCTTCCCTCCAC
TGCCACCTCCGCCAGCCTCACAGTGTTGTTGCTGCAGCTACCAGCTCTTTTCAAGAGTGG
CATCATCGTCTTGGCCATTTATGTGGTTCTCGTCTCCCGTCTTTGGTTCATCGCGGTGTT
CTGGGGCCTATCTCCGGTAATGCTACGTTGGATTGTCTGGGTTGTAGTCTTGGAAAACAG
ATTTAGCTAACATATCCTTATAGTGAGTCCGTGTCCAAGCGCTCTTTTGATCTCGTTCAC
TCTGATGTTTGGGGTCCGGTTCCCTTTGCTTTGAAAGGGGGTCATCGTTTCTATATTATC
TTTATAGATGATTTTTCTCGGTACACTTGGATCTATTTCATGTCTTCTCGTAGCTAGGTC
TTATCTATGTACAAAAAACTTGTTGCCATGGTTCATACCCAGTTTTCCACTCCTATTTGT
GCTTTTCGCACAGATTCAGCTGGTGAGTATATCTCCTATGCGCTGCAAGGATTCCTTGCT
AAGCAGGGTACTCTTACTGAGTTCTCTTGCCCTGATGCTCATGCTCAGAATGGTGTGGCT
GAGCGCAAGCATCGTCACCTTCTTGAGACGGCGTGTGCCATGATGATCGCCGCCTCTCTT
CTGCCTCACTTCTGAGTTGATAATGGTATCTACACCTATCTCATCAACATTCAGCGATAT
GCTGCTCTACAGGGTAGTATTCCTCTCGAGCGTCTTGCTGGTTGTTCTCCTGATTATTCG
CGCTTCGTTTGTTTGGCTGTGTTTGCTATGTTTTGCTTTCCCCTCGCGAACGCACCAAAC
AGACCGCTCAGTCTGTTAAGTGTGCCTTTCTCAGATACATTGATGAGCATAAGGGCTATC
TGTGTTGGGATCTTGTCGGCCGTCGAATGGATATTTCCCGGGATGTGACCTTTGATGAGT
CTCGTCCCTTCTACCCGCTCCTCGACCTTTTCCACGGAGGACATCTCTTTTCTTACCAGA
TACACCTCCATCTGTGCCTAGTATTCCTACTCCTCGTCCCAATGTTGCAGATCCGACGTC
ATCCTCTCCTACGGTTTCTTCTCCCTCCTCGCATGACTCTCCACCTTCATCAATGATACC
TTTCCCTTCTCCACTTACATCACCACTACATTCCCCGTCTCCACCAGTGATTCCATCTCT
TCCCTCCTTTCCTTTCCATTATACTCGTCGCCCACGTGTTGTGGATGAGTCTACTGATGT
GCCCTCTACTTCTAGTATGTCGTCTTCCTCCTCTCAACCGACTTATGGTCTTCGTTCTTG
GCCTTGTCTGCCCCCTGAGCGATATTCTCCTTCTTGCTATGGTCTTTGGATCATTCTTGA
GTGGACTTCTTATCGAGATGCAGTTCATCCTGAATGGCAGTTTGCGATGCCAGAGGAGAT
TGCTGCCCTGGAGCGTACCGGCATGTGGGATCTGGTTTCTCTTCCTCTCTGTGTTCGTCC
CATCACTTGAAAGTGGGTATATAAGATTAAGACTCGCTCTGATGGTTCTCTTGAGCGTTA
TAA