| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_39318
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_54697 |
1 |
517 bp |
MLOC_54697.1 |
Available |
Available |
None |
| MLOC_54696 |
1 |
1837 bp |
MLOC_54696.1 |
Available |
Available |
LOC_Os01g51650.1, FRAME:+2, EVALUE:9e-34, 13101.m05391 protein retrotransposon protein, putative, unclassified |
| MLOC_54695 |
3 |
1432 bp |
MLOC_54695.1 |
Available |
Available |
LOC_Os07g37270.1, FRAME:+2, EVALUE:2e-119, 13107.m03834 protein MSP domain containing protein, putative, expressed |
CDS Structure of MLOC_54697
CDS Structure of MLOC_54696
CDS Structure of MLOC_54695
Contig Sequence (9666 bp)
>contig_39318 9666 assembly3_WGSMorex_rbca.fasta
ACAATCTCCGTGTAAGGGAAAACTTGTTGNNNNNNNNNNNNNNNNNNTCCACTTGGGGTA
ACCAACGAGCAGCGAGAAGTATATACATCATCTCATCATCAGCGTTGCTCCTCCCTCATA
CCCAACTTTTTTTCTATACAATCGCTAGCCGAAATACTCTATTCTGCACTTAATATTCGG
ATATAGGATGCCAACGTTATTGATTTTGTAGGGGAGAGGAGAACAGTCGGATTCATGTGT
TTTTAGATCCATGTGGCACAAATCTAGGACGTCTCTGTTGTGGTTTCCATGACCAAGTGG
ATCCAATCGCCATCTATGAGGGCAATCTCGAATTGAAATTAGTAAGGGGAGGACATAGCA
GAATGGCATGATCCACGGTGTTTCTCACCTTTGGGTGGTTCGTTGCCATGTTTTTCGTTG
AGGGGGCGCTAGTGTTCTGATCTGGTTGCCATGGCAAATTGCGAAGGAAGAAGAGGGAGG
TAGGGAAGATTTGTCGATCTGGAGGTGGGAGACAACTGAAGGTGGCTACTCTGGCGCGCG
GGCGGGGAGGGATGACGACTGAGGGTGGATTTGGTCATGCAGGCCACGGGATGGCTCGCG
TGGATATGCATGCGATCGTGCTGGACATCGGACGTGCGCGCTGTGATGGGGCGCGCCCGG
ACGTGCTCGTGCGGGCGATCCTGCGTCGATGCCACACGGGGCGTGTGGCACACACCCCCT
AGATGCCACACATGTGGTGAATGCCAACGTCCAATACAAATATGATCAAACTTTGCAAAG
TTTGACTCGAGACAATTATTATGTGTAGAGTACTTAGTCACGTGTCTATGCATGTTTCGA
ATTCTTTAGCTAATGGAAACAGTGAATTAATGTTGTGAGCCACGAGCATGTGCTCCTAAG
AGCATCTCCAACAGACGCGCTAAATAATTTGGGTGCTTGGAAAACGACTTTTTAGCGTCT
GCTACCGCGCCCTGAACAGCGACTCGCTCGCACGAATGCCCACCAATTACCGGATTTGGA
AGCCCCGCTCTCGCGCGCGACTTCCCTATCCTCTCCAGCACCCCGTCGACGCTTCCCCAC
GACGTTCCCCACCGCGCATGTTGCTTCCCCCTCTTCCCGGGTGGCCGCCGCTGCTTCCTC
CGTCGCGGTCGCTCCTGGAGCGCCCCGTTCCGCCGACGAACAGCGCCCGACAGGGGTTTG
CAGCTCGATTCCCACAAGGTGTTTGACAAAACGCTTGCAAGATATATATTGCTACTAAAC
TTCATTTTGTAGATGATTTTGTAGATGCTTGTAGTGTTAAATTCTAGTTTGAATTCAAAT
TTGTAGATGGGTTCGTCCCATGATTCTTCTGATGAAGAATTTGATCTTCAAGAGGAGGAG
AACCTAGCAATGGTCCTAGCTATGCACATCAACAAAAAACGAAAGCACGGTGGTTCGGTT
TTTGGTCGTCAGAAATTGTGGAGGGATAGGACCGATGCCCATAAAAGATTGATAAGGAAC
TATTTTGCGGATATTACCACATACCCCGAGTCCTATTTTCGACACATTTTTAGAATAAGC
ATCGAGTTGTTCAAACATATTGCACATAAATTGGCGAGCCATGATCGGTTTTTTTCAGCA
AAGGAGGAATGCCGTCAGAAAGCTCGGGCATAACACCTTCCAAAAGGTGACCGTCGCGTT
GCGTATGTTGGCATACGAAATTTCGACGGATCTAGTTGATGATCTCTTGGCCATGGATAA
GAGTCAAATGGTGAACTGTCACGAGTGTAGTTTGTAGCAAATGACTATACATATAATTAT
GGCTACTATCTTGAGGATGACATCTATTCAAGGTGGCAAACATTTGTGAAGCCGTTGAAA
AAACCAAAAAGTAAGAAAAATCTTGATTTTCATAATGCTCAAGCGACGGATAGGAAAGAT
GTGAAGAATGCTTCTGGAATTTTGAAAACCTAATTTGCTATTGTGAGAGGACCGGTTAAA
TTTTAAAAATAAAATATCCTTTAATACATCATGAACGCTTGTGTTATCATGCATAACGAT
TTAGGCTATTCGTATTTTGGGAGACATTAGTTAGTTGAATTAAAGTCTTACCGCACCATG
CTACTCCGTATATGAGTGAGCTCATTTATTTCCACTGCTGCTGCTTTTTTTTATGGCACG
GCAACACCACTTCCGTCAGTTACTACTACACTTGAGGCGTCTGTAAAAAACTTGCAGATC
CATCCGGGGTGCATGATTAGTTTCACTATGCCAGGAGCAGCATAAAGCCGCGGTCCACAG
CCCATCAATGAAAAGTCAACCGGAGAAGAGATGAAAAAGAGGCGAGATCGAGGATGGAGA
ATGTACTGTAGCGAAAGCTGAGGTGAAAGAAAGATCACTTTAGAAGAGAGAGAGAGAGAG
AGAGAGATAGAGGGGGGAGAACCGAAGCAGAGTGCAACCCAACCACATCCTCCGTATCAC
GCTCGTGGTAACTGGTAGTAGTAACTTCCTCGCCCATGGCGATCTCCGGCGACGAGAGGT
ACGCGCCCGCCGCCGACTCCGGCGGCGGGAAGCTCTGGAACCTCTGCCGCATGCCCTTCA
GGCAGGCCAGCGGCGCGCCGGCGCCAGCCTCGTCCTCGTCCTCCTCCGGGATCCACCACT
CGGCCGGCCGCTACGGCGTCCATGAGGCGCCCGTCGCCGGAGACGGCGGCCCTCCTGCCG
CGCCGGCCGGGATCTCGACGGTCGCAAAATCTCTGTTGCCGGCGCGGCGCCGCCTCCGGC
TCGATCCGTCAAACAAGCTCTACTTCCCATGTGAGCACTCGAGGAAGTCATGTCTTCTTT
CTTTGAGCCAGTCTTTCTTGTTTAATTATGGGTTGCGATCGCGAGGAGCTCCGAAAGCTG
CAGATTTGCTGGTGCAGGGTGCCTTGTACCGTTCGATTTCGTTAAGTTCCGGTCTTGATT
TTTGGTTCGAGTCGCTCGATCTCCGCTGTCTTAAGTGGGATTCTGTGGGTCGCGGAGAAA
GTCACGATCTTGTGGCGCGATTTGCCATCCGAATTTCTTGATCTTGTTTCAGGAGGTAAA
CCGTAGTGGAATTTCCGTTTGTAGAGTTTCTTGCAGGGTTCGCCAACGCTTAGATCTCGA
GTGGATCTTCCAAGATTCGTGAGCCACGATTTTGGTAGGCTAGTTATAACATACTGTAGC
TGGCAGTATTAGGCTAGTAGTTATAACGTAGCCACAAGGTCTGTAGCCTTCAATGCAGTA
TCAGGGTCCAGGCAACTTTCTATTGCTGGCAGTTACAGTATTTGTTATACTCATTACTGA
GACCTTAGATGGAAACAGTGGAATCATAGGATGAAAACCAATTTTATGCATAAGTTTCTT
GATTGGTTGCTTTTGAGGGTTCAATATCTATATTTGTTGCCGTGCAGTAGTGGTGAACAG
ATCAGTTTTCTTTCTCACAGCCATACCCTAAATAAAAGACTAACTCTTCTAGTTGAGTTG
AAACCTGAAAACAAAATTGGAAGTCTATGTCGTTCTTGCTGCACTTGGCACGTTGTTGCC
TAGGCACACGCAGGTGGTCTCCAGGGTGAGGGAGTCTGCCTTTACCGGGTTAAGGATGTT
TTGTCGTGTCTAAATTTAGTACTCGCTCCGTCCGGTATTACTTGTCGCACAAATGGATAA
AAAGGGATGTATCTAGAACTAAAATATCTCTAGATACATCAATTCTTATGACAAGTATTT
CCGGACGGAGGGAGTATCTATCTAGGAAAGTGGAGTAGTGGACAACAAATAGGCAAGCAT
CCCGTGACAGTTTGTGAAGCCAAGTCTTGTGGGGTGCCCTCCCATAATGCCAAATGGACT
ATTTAATTTTGTGATGCAAGGCAAAATATTGGATATCTACATTGATGTTGAATGTAAGCA
GTACTAGAGTCTTCCACATAATTACGTAGTTATTAGCTCTGCAACTCCAACCCGGTCTTC
AGTAGGCGCTGCGTGAGTGCGTGTGTGGTGGTGTGAGTGTGTGCGTTTACGGTCTTTGGT
GTTTCTAAAAAACATAGTTATTCAATTGACATGAATGGTCTGATTGTTAAATGACTTAGC
TGTGCTGTTTAATTAACTTTCATCTTAATGAGTAGTAGAGAAAATCAAGAAATAGACTAC
AGTTTTACTTGTTTTTTCTCTTACATGTTCTCTTCTTTATAGAGAAGCTAATGAGTCTTC
GGGCTTGCCTTGTGTAGATGAACCAGGAAAGCAGGTCAAGAGTGCAATTAGGATAAAGAA
TACAAGCAAGTCACATGTAGCATTCAAGGTTAGTATTGATTATTGCTTTGCAGCTTATCC
AATGACAGATGGGCTGAATTTGCATTTAAAGATCCAGCGCTTCACAATAATTCTGTTGGT
AACTATATTTTTCTGACTGTTATCGTCTTTCTGAATTTCTAGTTTCAAACAACTGCACCC
AAGAGTTGCTTTATGCGTCCTCCTGGAGCCATACTTGCCCCTGGCGAGACTATCATAGCG
ACTGGTAATGTACTTGTCACATTGGTTCTTTTCTTAGCAAAAGCAATGTTACTCAATATG
TCCATATTTGGTGCTTACTTTTGTTTCCTTTCGACCTGCCAGTTTTCAAGTTTGTCGAGC
ACCCAGAGAATAATGAGAATGTTCTGCAGAAGTGCAAGGTCAAGTTCAAGATTTTGAGCT
TGAAGGTCAAAGGACCCATGGAATATGCACCAGAATTGGTTCGTGACATTTCTGTTTTAA
CCTTTTACTTTTGTGGATGCTTGTTATTTCTAGTATGTTTGACGAGCATTTTCCAGTTGC
CAACATATACCTACATGTACTATAGTTGTTGGACAGTTGGAGTGTAATTAGTCTGCTTAG
AATCAAAGTAAATGTGTTTCCGATGCTCCAAATCAACTCTTCTAACCGCCTGAAACATAG
AGGGGAGGAGATTGATGTCAGTGATTCGGTGTACATCTGGTATCGAATTGCTTGGGCGGA
AACTCATTTTTTACCATATGAGTACTCCTGCCTAATTGGGTAACTAATTTCACGATTAAG
GATTGTTGAGGTAGATGTAGGTTATTAACTGAACATTAGTTTATATCCTAAATCTCACGA
GGAAATGGGTGAATCCCAGAAGTGATCTTGCCCTCTAACTCTCCCAAGGGTTGACAGAGC
ACAAATCAACTCTGACCCTAACTCTCCTTTGTGAGGGGATATAAACAAGACACCCCATCT
TCTGCTGTTGTCATACTGGGAGGCTTGACAGACATACACACAACATAGGTAAGGAAAAAA
GTTCATTCCCATTCCCATTTGATGCTGTTGCACGATCTTTATCCAGGGAGGCAATTGAAG
GGTCAACTGTGTCCTTATTCATCTCCAGTTTGGCCAGTGTGGTATTTCCCCCTTGAGCCC
CCGTACTTCACGGAGATAGGAGGAAGGGGGCATAGTGGTAAGATGGGGGGGACGAATTTC
TGGTTTCTCATGAGGGATGCTTCTTCTATATCAATAAAACCATGGGTGCTAGTGCCCATG
GAGTTTCATTTTATTTTTTAAGATGGGGGGAGTTGCAGGGATGTTTTGCGATGGCAGCTC
CAGGGGGGCATGGGATATGAGTGGGTATAACATCAAAACAGAACCCATTAACTACGGCAG
AATTGATCCTAAGAAGCGACTTGACCTTCTCTCCTCGCCATGTCTCCTTCACATAATGTA
AATGCTGACATGTAATGTCCTTTGTAACGACATAGGCGGGTTGTTGGAGGTGCTCGAGTG
AAGAACAAACTGACAAATTTATAGGCGAGTTCAACCACATTCGACTCCCCAATAATATAA
TTAACGAAGACTAGAAGAGCACCTGAACTGGAATAAAGCCTCTTCTTTTCCTTCCCGTCT
CTTGCTCCTCTTGAGTTTTGCTTATAGTGTTGCTGCCACTTCATTATTTTTGTACTTGAG
GGCTAGGATTTTGCTCATCTCCATTTAGAAGAGGAGGCGTCTCGAGTCTCGACCCTTCAT
TGCCTTTCTACAGGCATGTTGAGGGTGGACCTATGTTTTTTCATATGCAAGAATGCTAAC
TCAATTCTTTCCGTATACTTATATATTTAGGATTCTTGAATATATTTGTGCATGTATATT
GTGTCGTAGGCCCACCTCCTAGTTTTCTATATAGTTGAGGTTGCGGCCCGTCTTGTACAT
CATATATACGTGCCTAGTGCACCCGATCAATGCATTGTGAGTTGCACGGCCTAAACCTAA
TTCTCTACAAGGATGTCCAAATCGGACGAGTTAAAATTCTTTCCTGAGGGAGGCTTGGGG
GGATTCAACTAGACGAATGTGCTGTTAATTCATAAAATGGAACTTGATGGTGTAAATGTT
GATCGAGTAATCCTAGTGCTAGGTAGTTTACTGCTGTAGTCCATTTTACCCTGGTCTGCT
TTTAGTAGTTTAGCTGGATACGAGGCAGTGCTCATGCTGTTGGTCCTCCATTGAATTGAA
AGAGGTGCATATGTTTGAGAGTAAGGTTATGGTACTGTGGAATTCCTCTATTGTTGGGAT
GTGGTTAAAACCTTACTTTCATAGCAACTCCTTTTGTTGGTTCCAGTTTGACGAGCAGAA
AGATCAGGCAGTTGTTGAGAAGATACTGAGGGTTGTTTTCTTGGATGTTCAGAACCCAGG
CCCAGTAAGTAAATCATACCATATATGAAATTTCTTCCATGAACAGAATCGTAATAACAT
GTCACTCCTGTTCCATTTGTTTCCAAAGCAACTGGAAAAGCTGAACACTCAGTTAGCTGA
GGCAGAGGCTGCACTTGAGGCGCGGAAGAAACCTCCAGAAGAGAATGGTCCTAAAATTGT
TGGTGAAGGGCTTGTCATTGATGAATGGGTACGTATATCTCTTCAAATCTCCCAGCTCTT
CGTTTTCTTGTGAAATTCCTTTCCCAGTGCTAAAATCCATCCTCCATGTGTTTGCCGCAG
AAGGAGAGGAGGGAAAGATACCTCGCTCAACAACAGGTCGAAGCGGTCGACTCAGTGTAA
ATTGTACCTTCTTCTGCTAGAGCAGCATATGGCTTGAGCAATGTGTTGTGATAATTCTTA
TAAACTGCTAGGTTCTGCTAGTTTAGTGTGCGGTAGTTTAGAGTTGTGCTTGAAGGATCG
GTCTCCAGTGAACAAGCTAACCTTTGGTTGTTTCAGTACTCGCTGTGTAACAGATAAATT
AATTGGCTTGTCAGAACAATAAAGTGCATATGCGTAGCTTCTGTTTATCACTTGCGAGAG
CTGACCTTGCTTGTGATGGTTTGTTAATGATGTATTTTTTTTGTCGATTCTTTGCCGCTT
CACAAAAGAACTTCTGCCGGGTCTTTTATGGTTGTGCCACCTATGTCCTTTTACTTTTAT
TTTACTTTTATTTAGGACTCGTTCGATAATCCATCAGCTTCTTAAAATTTAAAAATCTGT
GGAGCATTTGTGTAGCCGCTTCACAAATTATAACTACAACTCCGTCTGCTTGGGAGCGGA
GCCGACTTCGGACGGGTCTTTAGATCAGCTAGAACATGCCACAATAGTATCAAAATAAGC
CGTAAGTGCAAAACATAACATATCTTATTTTATCTGGCAACTCTTTTGAGAAATTTGCAG
TGAAGTTGACTTTATCATGATACTGGAATAGCTTATTTCTTATGTAAGATAAGGAATTAC
TAGTGATTTTCTATTTCGTCGTTTACATAAGAGTGTTAGTTGAGTTCAAACAAGCTGGAG
TCCTACGCAAAATGGAGGAAGAGAAAGGTAAAGCTCACCTTCTTAGATGAGAAATATCCT
AGATAGGCACCTATCGACATACAACAGTTCCTGCAACTACTCTGCTAGCAGGAGTACTAA
TTTAATCCCTTCATCAGTGTCTTCACCTACTTTGTTACTAGCTTAATTAACCACTTGATC
ATATCAAAACGCTAACATGGATTACCTCACCGTTTTCCTCCCAAACCCAAACCTTAAGTC
CGTCCCGTACGTGACGGTGGGCCCTCGTATTGGCGACGTGCGAGGCTATTTGGGAGCCTG
CCCTGTCTCTGACGCCTCTTTCTCGTCGGCGGCAGCTAGATCTGGTACAGTCCCGACCCC
TTTCTACTTCTTCCCCCCTCTCCAAGCTGCTGCCCCCACATCAGATTCCAAATCCCCCAA
CCCCCCACCCAAGATAAGCCTTCCGTGAGGCTAGGGCTCACGGTCGTACATCACCCAAGA
ACCCTAGTTCTTTCTTTCTCTCGATCTTCGGTCCGAGATTTGGTGCGGGGGAGGCTGCTT
CGAGATCCATGGAAGGAGTGGAGGACAAGCTGAAGCGATTGAACCTCTCTAAGGCGGAAA
GGAAGGGGTTGAAGATTGGTTGGAGGAGGGTCGCGGAGAAGAATGACAGTGTGGCAAAGG
CGATGGGAAAATTGTTCTCGGACAGACCGGGGTATGTGGATGGAATGGTGGTGGCGTTAG
GGAAACTCTGGTGCCCGATGAGGAGGCTGGAGGTAAAGGAGATGGGGGAGAATCGATTCC
TGTTTTTTGTTTCATCGGGAAGGGGGAAAGAGGAAGGCGCTAGAGAATGGCCCATGGACT
TTTGGCAAGGACTTGCTAGTCATGGAAGACTTTGACCCACGCAAAACCCTTGACGAGTAC
ACCTTTGCCACAGTGACGTTCTGGGTGAGGATCTACAATATCCCACTGGGAATGATGTGC
AAGGAGTTAGGGAGGACCTGGCGGCAAAGATAGGAGAACTGATGGAAGTTGATGGCGAAG
AAGATGGCACGACGCTGGGAAAATGCTTGAGGGTGAAGGTGAGGATCATAGTTGCAGAAC
CTCTTATGAGGGGCCTTTATTTGGATGTGGAGCCGGAGGAGGGTGGTAGTCAGAGAGGGA
CAAGAAGTGAGATGGAAGTGACTATTTTTGGAGATGAGAAGGGGGAAGAGAAGAAGGATA
AAAGAGTATGGTGCTACTTCGAGTATGAATACCTGCCGGACACGTGCTTCAGCTCTGGGA
GGCTGCGACACCTGGGCAAAGACTACAGAACCAAGCAAACAAGGGGTGAGAATGCTAAGT
TTGGGAGATGGTTAAGGTATGTACCAGATAGAGCTCATGTAAGTGATGTGGGAAGAGGGA
ATTGGAAGGAGAACAGTGGCGGCAGTTCAGGCAAGAAATATGGGTGGCTGAGTAATGATG
GAAAGTCAAGGAGTGATGTGGATTCTTGGAAGAAATCTGCGGGGAGCGAAGGGAATGAGG
GGAAGAAGAACATGGACAAGACCGAGGTAACTAGCCCGCTGAAGATCACGATAACTGAGG
AACATCGGTTAAATCACACGGGCGACGGAAAGAGCAAAAAAACCCTGAATTTTGGGGCTT
CGGGAATAGAGCAAGGTACGACGGCTGGCGCAGGGAACAAACTGACGGGTGGCCACACTG
AGAAGCTGCCAAATGGGACTGGAGGAGTAGGAAAAGTCCAAGAAGGTGATGGGAGGGATG
GGTTTCAAGGTGAAAGTGGATTGGCTGAGAAAGCACAAAATAACAAGCAGGACAATAAGA
AAGGAAGGAATGGCAAATTCAAGAGGCTGCCACGAGCAAGCACAGGGGCAGCTAGAATAG
TAGTTGCGGCGAAGAATAGGAAGGGTGAGGACATGGACAGTGACGAACGCGGGGGGGGGG
GGGGGG
