Contig Data
morexGenes
Links



Map Locations of contig_39296 (5070 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_39296

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54676 3 1384 bp AK359352 Available Available None





CDS Structure of MLOC_54676






Contig Sequence (5070 bp)

>contig_39296 5070 assembly3_WGSMorex_rbca.fasta
CCTAGTCGATCTACGGCTTCAACAAATGTACCTTACCACTTGGGCGCGTGAAAATTCACA
GGACGGACAAAAAAGCTGCGAATGATCTATACGCAAAGTGGGAAGGTGCTGGGAAGACAG
TGGAGCATGTGATCCGCCTTGTGAGCGGCACAGGAATATGCATGAATAATTGCAGCGAAT
GCAGGAAGGGGAGGTGCAAGGAGAAGGGGAAAGACCCCCAGCCTCTGCATCTTTAAGGTG
CACACAGCCAGTTTAATCAGAACTCGCCCAAATGATGGACGAGCTGACACGGGAGGCAGC
TCATCCCCTTCAACAAAGGAGGGGCAGAAGCACAAGGGCAAGAAGAAATCCAAGGGGACG
AAGAAGCCCGACAAGGGCCGTGGCAAGAAGTGAGCTGCTGTAGTGTTGTACTCCCTCCGT
TCCGAAATATAAGTCTTTTAAAAGATTTCATTAGGGAAACTACGTACGGATGTATATAGA
CATATTTTAGACTATAGATTCACTTATTTTGCTTCGTATGTAGCCCTTTAATTAAACTCC
TTCAAAGACTTATATTTAGGAACGGAGGGAGTAGTTCAGTTTCCCTCCTGCAAGAAATAA
TTACTCCATCGGAGAAGACATCATAAATGTGTTGCTTCGCGTCTGACCATGGATGCAACT
TTTGAACCGGCACAAGACAGATGTATGTACCCATGCTGCCATGCATCACTGTGAAGTTCC
CGCTGAATTTATTCATGTTGAATGAACGTGCCTACAGAAGTGTTGGGCCCTTTTTTTGGC
CTGTGGAATAGCCTCCTCTGCGTTATGGCACCACTTTTGAATATCCACACCTATTGCATC
GCGCAGGCTGTTCCTCCCCACTGGTGAAAATGAGCTAGCACCCATGATCTACCGATAGAA
ATGATGTAGTGATAGTAGTAGTAACTCGCAAACATGCATAGTCATGCAACCATGAATCAC
ACACACTTCAGAAACCCACATGATCGCGTATATACGGAAACTTATTTACCTACGCTTGCA
GTAATTCCACTTCTCGGAACACCGGTATGGATAAAGAATATTCTGAAATGCATAGAACTG
AAGAACTTCCTAGTTGCTTTACTTTCTGAAATGCGTAACCGAAGAACTTTCTGGATCTCA
GCATCACGAACAGTTACAGCTTCCTCATGCCGCCCTGTTTGCTTGAATCAGAATAGTTGA
GAACAAAATAGTCAAACTTGAAAGGGGTCTCAAGGATCCGCTACAAGCAACCGTCAGCAA
TATCACAGAACACACCAAACACACTTGTACACCGACACAGATAGAATATAAAGGTGATAC
CACAGAACACACAGAACACCGACACAGATAGAATATAAAGGTGATACGACAGAAACACAG
AACATGTTGCTATTACAATAGGGCAACAAATAACAAAGCTCTGGCTCCATACGATAGTCA
GCAGTGTATTTATTTCGACAACAAGCAAAATAAAAGCCACTTACCTAAGCTTGCAGTAGT
TCTAGTTCTCAAAACACCATTATGGATAGAGAATATATGCATAAAAGTCCACGAGAACAA
CATAGGGCGACTCGAGCAGCGCTCGTACTAACTTCCTACATGGCACTCTTCAAGCAGTGT
TCTCTACTGGTAGTTCCTCCCTGGCCCGTCCCTGCCCTCATAGGGAGGAGGGGCGGCGTT
GTTGTAGTTACCGCCACCTTGGTAGCCTGGGTTACCTGGCTGGCCCTGGTAGTCTGGTGC
ACCACCACCATAGCTAGGGCCACTGCCTTGGTAGGGAGGAGGCTGGTTGCCACCTGCAAA
AGGGGGCGGCGGGTTGACACCTGGCCCTCCACCCTGGTGGTATCCAGGGTTGTTGCTAAG
ATAGGCTGGGCCTGGTCCATTCTGCATGTTGCCACCAGGATTACCTTGGTAGCCTTGGTT
ACCAGCTTGGTACCCAGGGGTTGGGGCACCTTGGTATCCAGGGGGCGGCGGTGCATTCTG
ATAGTTTGGTCCACCTCCTGGAACATAGCCCGCCTGTGGGTTTGGGGCATGGGACTGGTA
ATTTGGTGGGGCACCCGAAGGCGGTGGCGGGCCCTGTGGAGGACGCCTTGGAGGAGCAGC
ATCATGGGGTGGCATTTGGCTCTGCCCTGGTGGAGCAGGCCCGCTCTGGTAGGCCTGTGT
GTTCTCCCTTCTCCTTTCAAAGTTCCTCGACCTGTCAAAGTTGCGAGGCCTGTCGTTGCG
CCGGGATCTCTCATTGGCACGGGCATTGTTTCTCACCCACTCCTCATGGTATTTGGGGTC
GTAAGGAACAGCTTGTCCATCTATAAATGGTTCTCCTGAAATACATAAGAAGGCATCAGA
TACACTCTCTTTACATATGACACAGATGAAAACTGAAAAAAGTGCACAAGCTAAAATAAT
CCAGGGAAGAAACGGCAGGTTAAAAGATGCCCACCTCAATAAATCATCAAATACATAAGA
AGGCATCAAATAGCCAGGACAGAATGACAAATGCTTGATACAATAAATCATCTTGCACAA
AGCATTTGACAGGCTACATAGTTATATACAGATTTGCATTTTCATCTTATGAGTTAGGAT
AACGCCCTCATCTTATAGGATATAGCTCTAGGATGATGTACTCCCTCCTCTGTCCCAAAA
TAAGTGACTCAAAAATAACTCAGTTTTGTATTAATTTTAGTACAAAGTAGAGTCACTTTT
GAGTCGATTATTTTGGGACGGAGGGAGTATATTTTAAACAAAAACTGGCAACTGCACAAG
CGCCGTCATATACTCCCTTCGTTCCTAAATATAAGTCTTTTTATTAGAAATTTCAATGCA
AACTGCATGCGGAGCAAAATGAGTGAATCTNNNNNNNNNNNNATGTCTATATACATCCGT
ATGTAATTATTAGAATCTCTAAAAAGACTTATATTTAGGAGAGGGAGTAGCTCTCATATC
AATTTTGAGTGCACTGTGTTAGATTCACGTTTCCATAGCATTTCCAAAAAGTTAGTGGCC
AACATAAGCTCCCACTTCAATTAAAAATTAACTAGGTTGTCACCAGTCACCATTTCTTTC
AGTTACTATATATTAAAAGTTAGTGTACAATTTTTATTAGATATTGTACATACTGGTGAC
ATCCTTTACTATATATTGTACGAGTACGAACGAAGATACAGAGAGAAGTCAAGATTACAC
TCAAATACTAGAAAACTCTACATGATAACACCAATGAGATGTTCATCACTAAACAGTTTA
ACTGCTTAACAAAATAAAAAGGGGTACAAAAGCAGTCAGCAGAACAAATAAGATACCAAT
GATGATCATTGATTAACAAATATTAAGCTATTAACCCTTTCAGTAAAAATGCAATTCCTA
AAAGCATGTGCTACAGGAAATTACAACATCAAGGAAACATATTATATAGGGATTCTCAAA
ATTCCTAGATCTGGAAAATGCAATTAAAATAGTCATATAACACAACATCATAGTTAGCAG
CAGAGTGGAGTATCTATTACCTAGTAAGGGGGAACAGCAACAAGCATTTCAAATTATTGC
AGTGAATATTCAGTCAGATAATAATCATTACCTCCATAGTCCTTATTTCTGACATCAAGG
TATGAATCAGGAAGAACCCAACGGACCTTAGGCAACTCTGAAAATAATAATTTAGGGGCA
TTTAACACAAGATCATTTTATGTCACCTACATAAAAGGATCACATACAAGACCTTTCATG
TAAAGATCAATACCTTTGAGTTTGTAGGAGAGTTCCTCAGATACTAGGGCACCAAAAGCA
AAATAATGCCTAGTTGACACAGAGTAGATCTTCATCCTGGCTTCATCTTCACTGGAAGAT
AGGAAAGATTCAAGAGACAGATATGTTATGAATAGCACATAGATGACTAAAAACAGATTC
ATGCCAAGACAGGAGACAACCAAGACATCAAGGAGAATTCTTTACTATTCTCCTCAAACC
AATGAGTTGTTATGGGTTGGAGAGGCAAAGAAAAATACTAAGATATGGTGAAACTGCAAC
AGATGGCCACCAACGAAGTTAGTGAACTTATAGTTGCCTAGATAACAATAACAGATACTA
AGCATGATCCCCAAGTAAGAATCACAAACGATAAATGTAAAAGCAGCATGTAAATGATAA
AATAGCATGAAATCAAGAGAAGAAAAACAGACACATTATCACACTTTTCCAACTCCGACT
CATAACCCATAAATGAAACTGATAAAAACACCTTGTTATGTAAATCTACAAAATAAACAA
ACTTCAACGACCCGTCGTCAACTGAGTTTCTGCACCCGCTAACTTCCAAACACCTTTTTT
ATATATCAAGACCTCACCCACATAGACCATACAAATGAATAGCCTCATTCTATCATAAGC
ATGCTCACATAGTCAATATTGCACATAAAAGACCAAGTACAACTAGCCCAATCTCTAATA
CTGCGATCAGAGCATCAAACAATCGTATCTATTCAATCGACATAGCAATTTCAAACATCC
ATATGGTCATTATTACTGCATAGTAAAAACAATAAGAAGCCCCGATTAGAAACTTGTAAT
TTCAATTCTCTGTCACATAAACTGGAGGCTGGTATCACATCAAACGATAGCACAACTTCC
ACTACACCACCTTAACAACCCTGGCCATTCCGCACCCTGAATCCCCTCCACAGCAAACCA
GATCTAAACATACGCGCCATAAAACTACGCTGATGTGATGACCGCATCAGAGCGGGAGAG
GGATCTGGTACGGTGAGCCGTACCTTCCGACGACCTGTGCGAGGGTCTTGATGTACCCGT
CGATGATCTCGTCGCGGGTGACGTCGGGGTTGGCGCCGTCGCCTGGGGGCGGCTCCATGA
CGACGAGCCAGTGCTCGAAGTCGCAGCCGTCGAGGAGGATCGTCTCCTTGGGCGGGCGGT
TGCTCCAGTTCGGGGACGAGTCCCGCAGCGACGAGTTGGCGGGCTGCGTCGCGAATCGCC
TCGCCGCCGCCCAGGGCGCCGCGGCGTGGGACGGGACCAGCGCCGCCGGGAGGAGGCTCC
CCGCGGCGGCGAGCGGGCGGAGGAAGCGGG