morexGenes - Barley RNA-seq Database

Contig contig_39294
Source Contig contig_39294
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39294 (9864 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_39294

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54675	5	2597 bp	MLOC_54675.1	Available	Available	LOC_Os10g42230.2, FRAME:-2, EVALUE:7e-157, 13110.m03964 protein AT hook motif domain containing protein, expressed
CDS Structure of MLOC_54675

Contig Sequence (9864 bp)

>contig_39294 9864 assembly3_WGSMorex_rbca.fasta
TAGATCACTCATGCCCTCTCGTAGAGTGACATCACCATGATAGGACTTCGTGCGTGTAGG
AAATTTTNNNNNNNNNNTGCGACGTTCCCCAACAGTATGTAGCGTATGAGAGCAACGTAT
GGTTGGGTTTACCATAATGACCTTTAGTAGTTGCGGATGCTTACTAAAGTGGCAATCATA
TGGGCATGTGATCCAAGTAAGGAAATTATGTCAAGCTTATGCCTCTCCCTCATACTTGTG
GGTTATCAAGACCTTTTCCGACGCCACTGTCAGGGAGCAATAGAATGGGTTTGGTATTCT
CATGTGTGCTTGTTTGCTTTATATATAGGTAATTATTATTTTCTATCTTTAGTTATGGGT
AGGAAATGTAAAATACCAAAAAATAGTTGTACTTGATAACCCACTGGTTGAGGAACCACC
TATATACCTCACTGTTGAAACTTTCTGCTTGGATTGTCTTCGATCCATTTGTGCTCGTGC
TGAAAACCCAACTAGCTTAGCTGAGGAATAATCATTAGATGAGCATGCTTATTTTGTGCA
ACACCGCTCTTATCAAAAGGGGAAACACTTATAGGATCAAATAACAATGGAATGCTATGC
TTTGAATTTGTGCTCTATACTTGATTATAGTTGTTGTTCTAAGGATCCTAAACACCTTCC
GTACCAATGTGAGTTCAATTATAATGAAATCTTATCTTATTATGCCAAAGGTGTTTATGA
TTACTATGATATTGAACAATCACAAGAATTTGTTGCTTTTAAGGGCGGCTATGAAGTTGC
TTCTTTGATTGAAAAGTATGATGCTACTCTTTACAAATTTTTATTGATAAATGTATGTTG
GCCTAGAAGAGATTAATATTTTGCAAGAATCTATGGAAGAATAAATTGATGAAATTGTGA
GCTCATTAGATGAAAAAGATGAGGAGTAGAGCGAAAAAAGGAGGCATAGTGAATTAGCTA
CCCGTGTCCACATTCTAATGATAGTAATTCTTTATCTCATACATTGTTTAATTTTTGTTC
GTGCTTACGAAAGGATGAATGCTATAATTCCTTGGATTCATTTCAAATATCCCTTTTTGA
TGAACTTGATGTTTGATATGCTTACGGCCATGAAGTCAATATGAATTATGCTTATTGAGA
TGAACTTGCTATAGTTCCTTATGTTACGCATGAAATTGTTGCTATTGCACCCACACATGA
TAATCCTATTATGTTTTTGAATTCTCCCAACTATACTAGATTTGAGAAGTTTGCGCTTAT
TAAGGATTATATTGATGGGTTATGTTTTACTATTGCACGTGATGATTTTGATAGATACAA
TATACAAGTGCTTATTGCTCCTACTTGAAATTATTATGAGAGAGGAACCAAATCTCCACC
TCTCTATGTTTCCAATATGATAAAATTGCAAGCAACTACCTATGCTATGTATTGGCATTT
ACTCTGTGTGAATGAATTATTCTTTTATGGCATGACAATGGATAAAAAGTGAGTTAGACT
TCGTGGCCCTTTCACTACGCACGGGCATAGTAGTTGTAACGGTCGAAGGGCCGGTTGTAC
CGGTTGGCTTGTAGTCACGAGGAGAACCGGAGTGGTATCATATTGTACCGCTTTGATACC
CGAAAGGACTCCACACGGAGAGGTAGTTGGAGTGGTAGTTGGGGCGGTTGTACGGCTCGA
GCGGTTGTACCTCTTCACTGGAGTGGTTGTACCTCTCCTTTGAGGTTGATGGTACGCGTT
GAAGTCGTAGCGGTAGTACTAGTTGTATGGCTGGTTGTATCGGTTGGTTTGAAGTCACCG
GGAGAAACAGAGTGGTACCGGCTTGTACCGCTTCGATACCCGAAAGGATCCCATGCGGAG
CTCAAGTTGGAGCGGTAGTTAGGGCGGTTGTACCGCTTGAGAAGTTGTACCTCTCCTCCG
AGGTTGGGCACAATCCTCTCCATGCTCATGGGGTCCGTCTTCCACCGTGGTTTGGCCTTG
CTCCTTATCTTATCCTTGGCTGATTCCTTAGTACCTAAGCACACAAAGTGTCTCCATTTG
AGGTAGTAGCCATGTCTCATGTGCGTCGAGGAGAGAATTAATCTTGCTTTCGATAGCTCT
TGCGTGAGCTCTTGTCATTGGTCCTCTTGGTGATTGGGGTGATGATGGCATGTTCATGAG
GATGACCGTATGATGCTCCATATCATAATGTTTATATGAGATTATGCCATCAATGATCAT
AGTCATGAATATTGCAATTCGTTCAATTACCCAAATGTAATTTGTCTACCATCACATTTG
CCTATTTTTAATTAAGGTATCACTAGTGAACCTATGCCCCCTGGGCCTATTCCCCATTAC
TCAGTTCTTCTACATAATTTCTCCTTTTATTTTTCATGCTACTTTGCTACCATCTATCTC
TACAATTTGTATTTAATCTTGTAACTGGCAAGACAAGGGGACTGGCAACCCTCTTGTTGT
GCTAGCGTAAAGTGTGTGTTTGTGTGTTTTGTGTGCGGGTGATGCTTACGTTGCTAGCTT
GGAGGACTCCTACTAGATTGATAACCATGGTTGTCTAACTAAGAATAATAATGGCTACCG
TTTTGCTTCATTCTTCGTCTCGGGGAATCCCAATAACTCCTCAGGGAGTAGCACCCTTCC
CCTAATAGTATGATTTGCCCTCACTCAAATGAAGAATAAAGAAACTAGTAAACCAAAGTC
TACATTGCAACTGCTAATTCTCGTCATGCATTCTGAAGACTTCAATGTTTGATTAACGTT
TTTAGGGGTCATAACTCTTCGATTAAACCAAATCGTTGGAGACATTCATCTATGTATACT
CACAAACACACTGATCCCTTGATCATCTAAAACCTCAAAGATGCACTTACAATATATAGA
ACCTATATATTTCAAAGTGATTTTGTAATGAAGTGACTAGCTCAAATTCATAAATGTCAC
GTTTGTACATGCTCAAGTGAGTTTCAAACACAGCCTAAGCAAGCTAACTCGTGAATTGTC
TCACTTAGAGAGCAACCTCTGCAATATGTGCATTTGTCCTAGCTCATATAGTGTGAATCG
CACTGCAAAGGTTAGAGTTGGAGGTGGTTCCTCTTTATTTGTGGAAGAAATATGCAAATT
TCTCACACAAAAGAAAAGAAAAATGCAAACGAACATAGCCATAGTTAGGTTTTGCCTAGA
CTTATAGACCGGCCTAGCACCACCACTTTCACTTCCCCTTGTATTTTCTGATAATCAATT
TAAGTAGTGATAAAATGATATAAACTCAACATAGAAATCGATTTTAGACCTAGAACTATG
ATCTAGTTCGATTTGAACTATGGTGATATTTGACCCATCATTTATAGATTGTGTAACTGT
ATATTCTCATGAATAGGACATGCATCCTTATTCTTCTGCCCACTTGTTCCACACAGACAA
AAGTCAGAGCAAAACTAGCTAGTAGTAATAGTCCAATACCTATCTTTTGCCAAGCTGCAC
TTCACTGCATTAGGTTTTGCATTTACCGGCAAAAATGTTGGATGTTTACATAAAGGTTGG
AGTGCTAGGTTTTTCACGTTTTTAAAGGCATAAGGAACCTGAAGACTTAGAGGGTGCTTA
GATACGTTTTAGTCCCATGACTAAAAATAGTGGGACTAAAACTTACTAGCCTCACCCATG
CTTGGATCCAAATACTAAAGAGACTAAAATTATGTTTATGAGCATTTATTATTCTCCATT
TCCAGACTAGTAGAGAGAATTAAATGAGGAGAGAGAGGACTAATGCACATTTTAGTAGGG
GTTTCTCTGACTAAAATTTTTAGTCTCAAGACTAGTTTTAGCCCTTCTTTAGTCAGGGGT
GTTTGGAACTTTATCCTTTTAAAGAGACTATTTTTAGTCAGACTAAAATAAGTCCCTTGG
ATCCAAGCACCCTCTTATTGAATCAGTCTAGCATAGTTTTGCAAATTCCAAGGTCTAATA
TAGGCGATCACATAATGCACGTCCAGGATGGATTAAACACACAATAGTTCCAAATTCGAA
ATGGAGTATACATGATTCCTTTGTTCGTCCACAAAGAAACCTTGCCAAACATTTTCTTTC
CAACTAAGATCCCCCATCTTCCATTACTTTCGTAACGGATATTGAAGAGTTCAGCATGCA
CCATGTGGAACATTTCGTTATGGAATTCATGCAGTCCAAAAATGAAAAACTGCAGCTGGA
ACAACGATACAACCAGCACAGCAATTGTGTACCACATAACCTTCAACCACCCAGCTCCAC
TCAACAATACTTCATCCCATTCCCACACCACGTCTGCAACACAACGTCAATTCAGATACA
ACTGTGGAAGACTAGAAATACACCATCAGGCATCACACAACACAATTGAGCAGCAATGCA
GGTAAACAAGCTAGAGTTCTTGAATTGAAACCGAAAGCATTCTAGAATTCATGATCCACA
GAAGAACGCCTAGCCTAGGAGGTGAAAATCTCAGCAGGTACATGACCATGAAGATAAAAA
CTCACGTTAGCGACAGCGAGAGCTACAGCATTACAGACGGCGGCTAAAATTAATCTTACT
TAGGGAAAAACAGCATGCCAGAGAGCAAGAACCTAAATCTCCTAGCTACCAGGTCGGCCA
TTGCTGGTCGACGGCAGACGTTACAGCAGTACCAGCTCCTCTCCAGCCCAGCCAACAAAT
GGGGCTCTCCTCAAAGGCCGAGCACACGGTGTTAGTTCGACATCATCTTCATGTCTGCAT
CGTGCCTGTTGTTGTTCTGATGGTGCGCCGAGAGCGACCAGCCGCCGGATGCGTACGCAG
GGGGCATGTGCTGCTGCTGGTGCTGCTGCCCACCAGAGTGGTTGTAGGGCATCCCACCGT
GGTTGATGGGGCTGCCAGAGTCATCGGATGATGCGCTGGATGTACCCTCCGAGGGAGGGC
TAGCCACTGGAGCTGGCACATAGGTGGCCATCTGTGGAGGTGCGGACATCGGTTCAACCT
TCCGTGGCTCAGCAGGCTTTGATTTTTTACCTTCGGCTATGAAACTAGCCACGACAACCT
GATATCAAGAACACACGACAAAGATGTCTAGTCAGCATTTCAACATATTTGAACAAACTT
GAGCAAAGAAAAATTCAATTCCCAAAATTAACAGAACCTGAACAGGTGTCGCAGCCGTTA
GCTGCCCAGCTACACATCCACCGAGAACCCGGCCATCAGATCCTGCAAGTGCAACGCTCA
ATCCACCAGTCCTGCTACGAGTATCGCCATCTTCTGCAAGCAGGAATGAACCAGATAGGG
AGATGATCTCAAATCGACCCTGCACCAGAATCATACATCAGAAAGTTGGCCAATTGGCAT
AGGAAGAAAGCTCCATGAATCTAATATAAGGAAAAGGTGTGCAATCATAAGCAGAGAGTC
GTTAGCTTTGAGAATCAGACTCAAAGTAACGCATGGACTTCTGTTTAATGTGCATAATTC
TGATAGTTAAGAAAAAATTACAGCAGAGAACACAATATTAATTTAATTGTTAAGTACATG
TACAATGTGCAAGCATTATTGCGCCATTCAGACCACACAAGATAATTACGGACCTCGTAA
GTCACCAGTCCACCAGATGTAGCTGGCTGCCGAAGTGTTACATTGCTTATTGCGCCATTT
GCTGAAAGAATGCAAACTGTGCGAGGTCCTTGCTGTGAGAAGGACATTATTTTTGAAGCA
ACATCCTGTCATGAAAAGAGATGGCATTTACATTAAAACTAGCATTCAGCCACTACCAAC
ATGAAGTGGGCTGCAGGAAATTTAAGCATGAAGTGACGATAGAATTAGATTGCAGACAGA
AATTGCATGGCACTGAAAAAATAAGTATGCAGGTTAACTCCTCAAAAGAAACAGCAAATA
TAAACACCTAAAGTTCGCTATATCATTGAGCTGCTACCAAAGAAAAATCACAAAACAACT
CACACAATGAATAATCAATATACCTTTACCAAATGCAAATGCAATCTGATCTATGCACGT
AAACCATGCCATAATTAGGACGAGGATCTGGTACTAAACAAAATTACTTCAATTCAAAGT
TCAAACAACCTGCTGTGCCCACTTCTACCTAATATAGGTGAACTACCATAAAGAACATAT
CTATGCATTCTTTGTGCCAGTTATACAAACAACATTCGAAACTATACCACTCGAGAAATT
ATTCCTTCGGGCGCAATTAACTCGATCACAAAAAGTTACACCACCTTCTACTGCATAAAA
AACTTTTTATCGACATGCAAGGTTGCCCCTGATCTAGATGAACTAGAAACTCTAAGCACC
AAAAGGTCAATTTGATCAAACAATTCCAGCCCATCTCAACTAGTCCCTCTTTTGATGGTC
CAGACTCACTAGCAACAGACACAGGTGCCACCACTTGCTGGTGTGTAGTTGCAAAAAGGC
CAGAACCCCATCACCCATGGTTTCTTCAGCTCCTACTTGCCGCTGACCGGTGGGGCCGGT
CAACAGCCATGCTGGGAATCTGCCCGGCACAGCACCACCACATCTTGCCGGCCTCCACAC
CGGCAGATCCTACTCTCGTGTTCCTTTGGTACAGCGAGACATAGATCCACCACCATGAGT
ACAAGTTGAGGTACCATGTACTCAGTGAACTGGATGAGTGTATGGATGGCGAAGGGATAA
ACAAAGTAAGAGCAGAAAAGAATGCGAGATCTGTTGTGTTTCTTCCACATGCATGGGTGT
TAATTGCTACCTCGCCGGCCTTGACGGAGAGGATGTGCGGAGTGAAGGAGATGCCCCAGG
ACCCTGCAGGAAATGGCAGACATGGCAAGTTGGTTAGATTTATGCAAGAAGCGGCGGCGA
TTATGGTGGCAATGGTGCGCGCGTACCGAGTGCTTCGAACTGCTTCTTCTTGCCGGAGCC
AGGGGGGCGGCCGCGGCGCTTGGCGTTGGGATCAGACGGCGGGCTGCTGATGGAGAAGCC
GTGCTGCTGGCCTGGAGGCGGGGGCGGCGCGGCACCGCCGGAGGCGGAGGAGAGGGGCGC
GAGAGCGAGGGCCATGCTCCCGTCGGGCGCGTACTTGCGCGGGCGTCCACGCTTCTTGCG
CATGAGGTCGCCCATGCCGAGCGCATTGCTGCCCGGCGGTGGCGCCACCGCGTGGGGCGG
CGGCGCGGCGTAGAGCATGGGGCCCGGAGCGTGATGCTGGTGCGGGTGCTGGTGCTGGTG
CTGATGCTGATGCTGATGCTGATGCTGATGCGGGTGCTGGTGCTGGTGCTGGTGAGGGTG
GTGCTCCCCGGGCGGCTTCCCCACCATCTGGTCGAACGAGAGCCTCATGCCGCCTCCGGG
CATGGGCGCGGCAGGGTTCGCCGACCCAGCCGGCGGTTGCTGTTGCTGCTGCTGTTGCTG
CTGGTGGTGGTGGTGCTGCTGCTGATGGTGCGCGAACGGATGCGGCGGCGGCGGCATGGA
GGCGATCGGCGGTGGCTGAGGCTGCGGTTGCGGCTGCGGCTTAGCCTGCGAAACCGGGGC
AGGCGCAGGGGCCGGGGCCGGCACCGGCGCGGTGGGGGCAGCGGCGGTGGCGGCGGCGAG
CGGCGCGACGTCCTTGGCCTCCATTCCGCCCAGATCCAGCCCTCCTGGTCTTCCGGGTGG
CGCCGTTACCGCAGCTGCCTCGCCGCGAGCTTCAGTCTCAGCTCGAGGGTCTGAAGCCAA
CAAACAAAGCCAATCAATCAATCAGTCGGTCAGTATCCGGTCCGAGTTTGACCAAACGAG
GGTCTGCTGCCGCTTTATTTCTCCCCCACTCCACTCGGAAGCTGCATCTCAAACGAACTC
ACGAACAAAAAGGTTGGAGATAACAACGGAGGCGAGTAGTAACATGGGAGGGATCGAGCA
AGAAAACAATCTCCAGAATATTATCAGATATAAAGAGTCAGGATGCGAACAAAAGGGAGC
CAGAGATTAGGTGGGGGTTAGGAGGGGTGGCGCGCGTGCACTCACGCTCACGCACCTAAT
GGATGAGATCGCCGAGGACACCCCTTCTTCCTCCTCTCTCGCTCAAAGCACCAGACGACG
CCACTCCCTCAGCTCACTCCTCCTCACTCAGCTCAGTACTACTGCTAGTTCTAATGCTGG
GCTAGGCAGAGCTATTCCAATCCAGAGGGGGAAGGGAAAAGGGAGGAGGGCAGCGAAATT
ACGGGGAACGGAAATTACTAAAGTAAAGGCAATAAAGAAGGGGGAGAGAGGAATTGGGGG
CAGAAAGAAAGGCGATTTGTTACGGGTACACGCTTCACATGCAGGCACTGCATTTCGGGT
AGTAATAAAGGCCAGCGGCAGGGCGTAGTTGGGGAGCTACCCTGCTTTTCTCCCCCCTCT
CTCTCTCTTCAAATTAAAAAAAAATAGTTTTTCTAATCTTGGTTTGGAGTACGTTTTCTT
TCTCACTTGAGCAAGGAAGAGAGAGAGAGAGAGGAGAAGTGGGACTGGTCCACTCTACTA
CTCGAGAACCGAAACAGTAGCCGAATTAATATTCAAAAGGGGAGCCATTGCTTGCTTGCC
TGCTCGTTTACGCCACGGATTTACTACTCCATAATTAATTAAATTGGCGTGGTACCAGTG
GCCGTATTGATGGCCGGTTTAGAAAAGGCCTTGTCTTTTTGGGCGTGCTTGGCGGGCAGG
AATCAATCGCCCCTTGGTCATTACTTTTCTCTCCCATCTCTTTTTTTTTTTCCTTTTTTT
TCCCCTTTGCTTGCTTGCTTGGCCTCCCTCTCACCGGCTTTTCCCGCTTGCGCCACCTCG
CCTCTTTCCCCCTCCCATTTTTATAAACCTGGAAATGTTTTCCTTTTGGGGGGACGGGGG
AGGGCCCGCCTGTCGGTGAGAGGTCGAGGTGGCCCGGTCAGAGGGGGAGCGGGCAGCTGG
CTGGCCGGTCAGAGGGACAGCAGGCCAGGATTCCAGGCACGTCACGTGACACCATCCGGC
CGCAGAAATAAACAACGCCGCGGGCCCACCGCCCCGGGCGCCGGTTCCCGAGGCGCGCCA
CCGTCTCTCCCTGCGCGCCGGGGCCCGCGGACTGACTCGCGGCAACGGTCACGGCCGCAG
CCCGCGCAGGGCGTCTCTCGGCCGTCGGATGGCGCGCGCGGACGCATGTTTTTGGTGGCC
CGGATGAGTCCACGCGGATCGGAGGGCCCACGCCCGCTGCTCGCGGACTCATTGACCGGG
GAAGTCAACGTTCTGGTGAGTGATCGGATGGAGCGAGCCGCCCAACGGAACGTACTGCTG
CTGGGGTGCGTCCTCTGGTAGCAGCAGCGCACGATACGACAAACGTCGCCGCTGTTCGCG
CCTCTCACCGGTCGTGCTCATCCATTCCATTTCCGCCGTGGGATATCTCGGGGGCATTCC
TGGTAATCCGCACGGGCATGCTGCCGCCAGGGTCTCGTCGGCTAGGGTTTAAGGGCGTTT
TTGGTGTAATTATTCACACGAATCGGCTCCGTTCGTGCTACGTCTGTTATCTTTTTTTCT
GTGGGGAGATCTAGTCAAAGCATCGGTACAAAATTGCTGCATGTACCAGGAAAGTACTGC
TTCGCTTTTTTATTACTACAAGTTTATTACTACTACTACACTTTAGCCGATAGGTGAAGC
ACTGTGGGTGTGCTGCTACGTTTTGCATTTGCATATAAGAGGTGTTTGGATTAGACTGGC
CATAGTGGAGGTATCATAGCTAGTAATATAGTCTTGGGATTAGCAAACATGCTGATGTGG
CAAATAGTTAAATAAGTGAGAGGGTTAGAGGCCCTGTTTGTTTCAAAAGTCCCGGGACTT
TTTTTAGTCCCAACTTAAAAGTCCCTAGTCCCTATCCGTTAGTTTTCACGGACTAAAAAG
GAACTAGAGGTCATTAAATGACAT