Map Locations of contig_39269 (9048 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_39269

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54642 1 641 bp None Available Available None
MLOC_54643 1 1231 bp None Available Available None





CDS Structure of MLOC_54642






CDS Structure of MLOC_54643






Contig Sequence (9048 bp)

>contig_39269 9048 assembly3_WGSMorex_rbca.fasta
TGATGAAAAAGGTCGTTAGTTTTTGAGGTTAGGACCCCTCCGGACAGCTTACGACTAATT
GTTCTCAAATGGTCATAGATTTATGACCAATTCTGCGAGTGTCACTGACAAAAGGTCGTT
AGTTGACATATTTCTTGTAGTGCATCTTTCTCCCCTCCATAAACGCAACGATCAAGTTGC
AGCAAAAAATATATGACAAAAATTTGCACACCCTCTCCGTCCCCTCACCTTTCACTTTTT
TTAATTACTAGGAATACTTTAACAGCAAAAAATGCAAAAAAGTAGGTTGATGACCAGTTA
AAGCTTGGTTTGACTCTTTTCACACATACATAAGCAGTTGGTATGGCTTGTACGAACTTG
AAAAGAAAGCTCCCAAATAGCTAGGCAACTATGTACTGCAACTAGAGAACCTAGTTCATG
AATGTATGGGTTGTGGATCATGCTGTTTTCAAAAAGGTAAAACCACACGAGGCAACTTTA
ATTGTGATTTTAGGCAACTCGTATTAATATTTGAAGCAACTACTATCAGGCATGTAAAAA
ATAACTGCTTCCCATACAAATTTTCTTGCAGTAAAATGTCATGCATCCCCTATGCAAATG
TAAAACGTGAAAAAACTTTGCCTGCTATTTCAGGCAAACCATGCTAAAATTTAAAGCAAC
TAGTGATGGGCATTAAAAAAAGGGACTGCCACCCCTATAAGCTAGCTCCTTACAGTAATA
TAAGGCAACCTTTGTGAAAGACAAAAGAACCACAAAAACAACAAGTAGAGAACATCATAT
ACATGTGGCAGTAACACATATGTAGGTGCATTATAAACACAAGTAAAAAACAAAAAGACA
TTGTCGCAAACTATCAAAGCCTACTAACCCCGACGTGGAACCTAACACACAATGTGGACA
GAAAAACAGACTTCGCACCACTAGGTCTCGACCACGCCCCCAAGAATTCATCATGCTACA
ACCTTTGTGGCAAAAGAGAAAGGCAATAAAATGCATTGATATTGGGTGTAAAAGTGTTGT
TGAAAAACAAAAGAACATTTGTATAAAAAGGAAAAAAATCTAATAATCGCTAAATAATTT
AGAACATATGGAACACACAATTTCCCCTATTGCCGACTCTTTGTTGTACAATCTGTTTCT
CTAATTGGTTGCCCATAACTACCAAACACTTAACTCTAAATCCCGTAAAATTTGCATAGT
CCTATCAATAGTTGCCTCTTTTTTGCAAGCCTGATTGTACTGGTTGCCTACCAATAGTTA
CCGATTTCCAATACAAGTTCCACATATAGATAAAGCGGTCACATATAGAAAAGAATAAGT
TCACCAAGCTACTTGTGTGTAGTCCAAGCCTGAACAACTCCATAGTTTTCCCTCGGCTAG
GAAGTAGCAAAGGAGAAAATAGCATACACATGTTCATTTTTGGAGGGTTCACAACACTTC
GCGGTTTTAGTTACGTCCCCATGACCAACTCCACCTTGCTCCCCCTCTATGATTATTTGC
CAAGTATTTACGATCATACCAAGGGATCCCACCCCGAGGAGATAAATTCTTGATGCATCT
CTATGACACAAACTTGAAAGGTATCTTGCCAAATTATACCCTTGGTAATGCTTTTGTTAA
TGAGGATTGGACAACTTGATACATGATTTTAGACAACTGTATGGTTGATTTTGACCAACT
GGATACATGGTTGATTGTGGGCAACTGGATACATGATTTTAGGCAACATTATGGCTGATT
GTAGGCAACATGCCACATGGGACGCCCCGCCACAAAGGCTCAAACCTGCCAAGCCTTTCG
GTCATGCGTGCGCCCAACCGCCCATAGTGCCCAGTGTAGTCCCATCCACTGAGCTATGCT
ACTGGGCACTCCGCTATATAATGTGAAAAAGTTTCATAATATAAAAAGCAACACATTTGA
TAAGTTTGCCCCGTGTAAACAGAACATCGAACCGAATAAACCAATTAACCTCGGTTAGCT
GCTTTTGACTATTCATTTCAGTTTATAGTTTTGCAAATTTTTAAATTAAATGAGTGGTAA
CATTGAGTTTTTTAGTTTCTGTCGCCCACCCTAAGATTAAAGAAAAGTTCACAAGTTTTA
GAAAATTTCATCAATTTAAAAAAAGCATGACAAAAAAATATTCATGAAATTGAAAAGGTT
CATTGATTTGAAACAACTACGAATTTGATAAATAAGTTATCAAATTGACAAAAAGTTCAT
GAATTTGGAATTTTTTTTGTTAAACTTCAAAAATTTCATGAACCTAAAAGGTTTGAAAAT
TGAAAACATTCATTTGAAAAACAAATCAAGGATTAAAAAAGTAAGTTCATGAACGTAAGA
AAATCTTCACAATTTAAGCAAATGAAAATATAAAAAAATAAAAAAGATAAATGAATAAAA
TCAAAGAAAAACAAATGCCAAAACAAAAGAAAAAAAAGAAACCTGATCGAGAATGTAGAA
CAAGAAGAATAAAATAAATTAATATGTGCAATAACTGAGTTATCCTAGTTGGTTATACGG
CGGGAAGTAACCCAAGATGTTTAGAGTGTGAATCCTACTTCATGCACCTACTTTTTAAAG
GTTAAAATTTTGTAAAAAACAAATGGGCCAGGCCCACGATGCGGGGGGGAGGGGGGTGGG
CGCCTCGGCACGCGTATGTATACAGCGGGCAAAGAGTTTAACCATGGTGCCATTTCTTAT
GAAGAATGAGTTATTTGAGCCATCCTTGTGTTTAAGGAAAGGGGAAGGGTGTGCCCATGC
AGAAGTGATAAAAAGAGTATTAACAAATTTAGTAGGTGTTTGCCAAACATTAAAAATATT
TCCATATTTTATAAAAAGACACAACAATACTATTCAGGAAGTTGAAAAATACAAAATGAA
AAACAAAGAAATAATAAATACAAATAGAAACAAAAATAAAAATGTCCACAAGAAAAACTT
GATAAGATAAAAGAGAAAATAAAAAAAACCTAAAAAGAATAAGAAATGTTGGTAATCATT
TTTACAAAAAAAGACACATTATTTGTCTTTATAGAAAACACAAAAATGGTCAAAAAATGA
AGAAGGAATAAAAGTAACACCTACACACCCAGTGGTCTCTCCCATTTCCACCAGCCCATA
AGACACCCCACGAAAAACAAACAAATGAGCCGCCTAACAAAAAAACCCTACCCGTCAATG
ACAAAACAAGCTGCCAAAAAGATAACAAGAAAAAGAAAAAACTATGTCGTCAAAGAGACC
ACGTGAAGGAAGCGTGTGGCAAAAGTTAGAGATCAGGCTGGCCGAGTCTTGCGGACGTAT
ACTGCTGCACTTATTTGGACTTTGTGGCACATTAAAATAAATTAACGATTGAAGGGAAAT
TTCCTTCTCACCTAGCTGACATTATGCTCAAATGTATCATCTTTCTGCAGTAGTGGAGTC
CATTGAGGAGGCACCAGGACTCTGAGGGCCTCAAGTTGGCTATCCAAAGACTTTGTAACT
TCAACACCAGCACTAGATCGCTTGGCACGACTACTTAGATGAGGTGGTGTGTCGATATGG
ATGATCGTTTTGTAGTCTTGTGCTTATTTTTTATGTATGCCACAGTTTAGGCTGGTGATG
ACCATGGACTTGGTTACTTGTTTTGTATTTGGTTGCACTTGTGAACCAACCAACTCTGTC
TGTGTGGGCTTTATTACTTTAATAAAGTCGGATGCCTCTGGCATCTTCTTCTAAAAAAAA
TGTGGCAAAAAACAACTTTGGATCGAGATTTGCACGAGATATACAACATCTATATCCCCA
TGGCAAAGAACTTAGATGAGACATTGCACAGTAGAATGTCCACCGCAGGGATGCCGATGG
AGTTGAATACCAGGTCGTTCCGAGTCTTCCCGAGGTGCCACCCGACAGCAACAAGAGACC
ATTCATGTCGACCACCCATGTCAGTGACGTATGAACCGTGAGACTACAACTGCGCGCAAC
TGAAGAAGCCTGGTGGTCGAAGCCTAATTGCTGCCAAATCTCCCGAGCACGAGCACAAAC
AAGGAACATGTGATCACCATCTCTGATCTCACCACACAGTTTGGAGATGCTGGAATGGGA
GTAGCGCGCAACCAAAGAAGATTGGTGGTCGAAGCCTAACCTCCACACATGTCCGACATG
GTTCGTTAGCTCTAACAGCATGGCACCCTTGAATAGGGCGCCTGACAATCTTGCATGACG
CCCCGGGGTCAAGCATTATGAAATGGGCTATTTTTTGAATCATTTTTAATATGGTTTATT
TTGTCCTTAAGTTTTTGAAAAAGGCCATTTTTGTGATTTTCCTCACAGCTAGAAGAATCC
GATAGACAAGATAAGGGAAAGGAAATAAGAAAATCCAAAAAATGTTTTATGCGTGGTGGT
GCCTACCAAGAGAGGTGTTGGCCCACCGGATAGCCGTGCAAGAGATTTGATGTTGGGATC
ATAGGAGATCCCGACCTTTTTGTCCCAGATCCTATTTGGCGTCGTAAGCGCCCATTCCTG
GGCTCGGCCCATTTGTTTATTTTTCCTCTTCTTTCCATCCTTTCAAAAAATACAAGACCG
TTGTGTGAGATTCAAACTCCTGCCCTCCAGATTCGGTCCCGACAGGCATAATCACTGCAA
CAACATTCTTTGTTCTGCCCCCATAATTCTTCTTCTCTTATTGTGGCAAATGCAAGGTTG
CAAAAAAATGCCACACTTCCTTTCTGTGTTTCCTCCTTTGCTCTTTTCACCTGTTTGGCA
GTTTATTCCATGATTTTTCATTTACTTTCCTTTTTCTTATCTTTTATAAATTGAAAATTT
TTGTATTAAAATTGGTGAACTATTTTCTAAAAATTCAGTACTTTTTTCCAATTTTATGAA
CATTTTCTCAGAGTTGACGAGCTTTTTTCAACTTCGTGATATTTTTCCAAATGTGTGATA
TTTTTTTCAAACCCGGTATTTTGTTTCGAAAAATCGGTATACTTATTTTTAATTTCGTGA
AAGTTTTACAAAATTGATCAAATTTTCTATTATAAAAATCATATTCATTTTCTAAATATG
TGGACTTTTTTCCAAATGTGTCAAACTTTTTTTAAAAGCTGTGAACGTTTTTTCAAAGTC
AATATCGTTTGTTCGAATCCCTCATTTGTTTGAAAATCATTTAACTTTTTTTCGCATCCA
TGAACATTTTATGAAAATCCAGTGAACTTTTTTTCTTAATTTATGTACTTTCAGTTCAAA
ATTGAAGACATTTTTCACGTTCGGTTTTGTTTTCCGACGACCGCATGTTAGGCCTTTGCC
AAGGGGAACTCCTATGTGATGCCTTCACCGCATGTTAGGAGAACAGACGCCTGCAGTGCT
CCTCCTCGTGGGCTGGCCCATGTAGAATACGTTGGTCATTAAAGAATCAAAAAAAAGTTC
ATAGAATTTCTGAAAGTTTAGGTTTGCGAAAAAAGTTCAATGATTATGAAAAAACGTTCA
CCAATTTTTGAAATATTTTCATGGATTTTCAAAAAGTTCACAGAATTCGAAAAAATAATA
ATTAATTTTCAAACAAAGATCATCAATTTTTTAAAGTAGTTCAATGATTTTGGAAAAGTT
CATTAATTTTCAGTTATTTTCACCGATTTTAAAAAAAGTTCACCAATTTTTAAAAAATCA
TCGATTTTCAAAAAAATCCACCAATTACAAAAAAAATTATCGATTTGGAAAAAATCACGG
ACTAAAACACAGACAGGATCTCTAGATGGGCCGGCCCATTGCGGAGCGCTGCACGCGCCG
GTTAGCAAAAATTGCGTGTAACCGGCGCATGTGGCGGTAAATAGGGTTTGCCTTTGCCAA
GTACTTGTGGAAAAAAAATTCTTTCAAAGTTATATATCTGCATCTTTTTTTAGATAAACT
ATGTGTCATTTATTCAATATTGGATTACAAACCCATATGTAGCCATGATCTAGAGACAAT
CAAAAGATCAGTAGCACAATACTCACTAGCACAATATCTTGCAGAAAGGACCCCACGTCA
AATAAAACTATAAATCTGGAAGACCTAAATGCAAAACAACTAACCGTCGCTGTCGTACGC
TGTCTTGGCCGAATCTTTGACGGACAAAGGGGAGACACCAACTTGCCGAGAACCAAAGAA
ACGCCATAGCAGACAAAGCTGCGTTGGTGAGTCGATGAAACGGGTTGCTACGCGACCCGA
GACTTTCTGGCTCGTCGATCGGGAATTATCCCCACGCTCTTCGGTCCATGACTCCACTGC
CCTCAAACGACATCGTCAAAGAGGAGACTCGAAGCCGCCATCTAGCAACCACACATCATG
TGTGGAACCAGCAATTTTTCGAATGAGGTCGTTGCCATCGTGCTCGAGGGAGACATCAGC
GACAACCCCACTGCATCCAGAACAAGGCCATCGTTCTCGAGCACGGCGTTGGAGCAGATG
CTCTCGCGACGGCGAAATCAAAGCACACATAGCTTCCACAAAGTAGTCGCCGTCGCCGTG
CCAACCTTGCTTAAACACGGAACCAACCAAATCCAACACCAAGAATAGATGATGTTGCAT
TAGAGAAGGATCCCGAGGCAATTTATTTCCTGCTGCCATGGCCATCGTTAGAGAAGAAAC
CATGAATGATTGAAACCCTAAGCAAATTAGTCTTAGACTACTCCTACTGCATGTCGTACG
TACGGTCCGACGACTCCCCTCCCGCCGATGACAAAAGCCGAACGGCGGCAAACGGGTTGC
CTCTTTCCCCGCTGGAAGACAAGAGCGAAGCGCTTCCTATTCGACGGTATATCTCTGCAT
CTTGGTGAGAGCTATCGAGTTGTTCACAGAGCATGCCCTTGTGTGACAGGTGAACATGCG
CGTTAGTGCGCTTCAGAGCATGACCAGCCGTTCGCCACCCTGAAATAATGCCGATTGGGG
CAAACCGGCGTTAAAATCAGCTTGGGGCTCGTGTTCCGAGCCACCCTCCAAAGTCGCCCT
AGATGTCGTTTTCCAAATTGAATTCAGATCAAATTCAAAGTAATTTAGGCGATTTCATTT
TAAATTTACACAAACATAAAAAAATACATAAAAACATTAAAAAAATACGCCATCGCCGCC
GTCCTACCACCGCAGGCCTAGTTCATGCCGATGAGCTTGTAGAAGGCGGTGTAGTCGTTG
TCCTGCCGCCGCTTTCCTCGCGCCGTCCTTGCTGCAACCTTGCCCTGGATCGCCACTGCG
GACGGGGGCGGTTTGGGCCTACATCTCCTCGTCGATGCCGCGGAGGACAATGACATCACC
CTCTTCGCGACCACGGCGCCGCACGACGATCTCCTCCAGAGCGCGGCGCGGGCGCTTCAT
TTCCTCCCGAACATAGTCGTACTGCGACCACTTCAGGCCGGTGTCCAGGTCGACGGCCAT
CTCGGTGTGCTCCTGCTTGACGACCACCGGTGGCGTCGCTGGCTCCTTCTCCTTCTTCGA
CCTGACCAGTCAAAGATGGTCGCGGGGAGGCGAAGGTTGGCTACGACGGCGCTCCGACGT
CTCGTGGGGCCCGACCTTCATGGTGGCGAGCGGCGGGAGGAGGACGAGGAGGAGGACCCC
GCCATTCGCCTTGACAGCCACGAGCTGCCGCTCCGGCGCGAGAGCGACCACGCCGGGTAC
TCCAGCGGCGTCTCGTTGCCACCCTCGATGTACTCGAGGTCGACGTGGAGCGTGTGCCCG
AGGACGCCCCACCACTCACGGTGGCCGTCGGAGTTATGGCGCCCCGTTGGCGTCGGAAAC
CCGTTGGCGGAGGCAATTTGGTCGGTGTGGTGGCGTTGAAAGTACGCGGTCCACAGAGGG
AGGTTGTCAACGGCGTACTTTTCTTCATGTCGCGCGTGCTCCCGCAAAGTCGCTCGGATG
AGCGGGATCTAGCCGCGGCGTTCCGCGGCGGATGGTGGAGGGGGCACGTGGACTCCTTCG
ACGCTTAGTCTCGAGGCGCCCGACACACGCATGTCTGACGGTGCCGGGTAGTTGGCCTCG
TGAGGGCGTGCGCCTCCCACTAGTGCAACGACCAGTGGCCGAAGCCGTTGGCAGCCACTC
CGTCGTGGTGGAACCGTTCCGCCATGGACTCGGGAAAGTTTCTGACAGTGGAGGCGAGAG
AGATAGGAGAAGAGGATGGAGGGGCGAGTGTAGGGCGAGCTGCAGCGACACATGACTTTT
ATAGCGGAGAAGGGACGGGAGCTGTGTGCACGCGTGACTGAGAAATGACGGGACACGTGG
CGGCGTGCCATCATTGCGCCGCCTGACCTTGAAATCCACCGCATTGAACCGACATCGGAG
CCAGGCGACGAGGAGGACCCGTTTTCGACGAGGTCGAATGTCGGTGACTCGGCGGTTCCA
TGCGAGAGAGCTTTGGCGCGGTTTGTTTTCGCGTTAAAGCTCCCGCGTCAATTTTGATCC
AAATCCACGAAAACAAGATGAGACAGGACTGACTGGATTTTGTTAGCGCCGGTGACAAAA
AAGAATGCGTGGGGGCTGGCTGGAGATGCCCTCAGAGTTCAGACCTTGGCGGCGGTCGGG
AGCATGGAGATGGCAGCGGGAGTTTCCGAGGTTCATCTGCTCAGCATCTTTCCCGTGTGT
GGCGGTGCCATGTTGGCCTCCTCCTCGAGGATCTGCTCTCTCTGGACTCCTCTATCCGAT
TTGTGGGAGCACGATGGCCCTCGGCAGCAGGTAACTATTCCTGGTGAGTTCCCGTGTGGG
CGCGGTGCTACGGACAGGGTTGAGAAGCAAGATGGCAACACATGCAAGAACCACCGAGAT
CAGCTAGCATTACACGAGTTTTGGAACGGGGACGAGCGATTGATCCAGCGATTCCTTCTG
TTTCAGCCGATATATTGCATTCCATTACAGTATTCGACAGCGCTTGAATTGTACAACGGG
ACACACTTGACGGAACGAAGGGGATGGAGGGCAGAGGGAAGCGGTGAATCAATGAACACT
ACTGTGGATCCTAATATATTGCTTTGCGTTGCTGCTACTTCTACTTGTATAATCAACTGG
CCTTTTATGTACAAGTACGACCTGCCGACACCATTCTGGCACAGCACA