morexGenes - Barley RNA-seq Database

Contig contig_39267
Source Contig contig_39267
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_39267 (10624 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_39267

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54635	1	247 bp	None	Available	Available	None
MLOC_54638	1	268 bp	None	Available	Available	None
MLOC_54637	1	2080 bp	AK354004	Available	Available	None
MLOC_54636	1	890 bp	AK377145	Not available	Available	None
CDS Structure of MLOC_54635

CDS Structure of MLOC_54638

CDS Structure of MLOC_54637

CDS Structure of MLOC_54636

Contig Sequence (10624 bp)

>contig_39267 10624 assembly3_WGSMorex_rbca.fasta
GTTCCTAAATATAAGTCTTTTAGAGTTTTCATTAGGAGACCACATATGGATGTATATAGA
CATATTTTAGAGCGTAGATTCACTCATTTTGCTTCGTATGTAGTCACCTAGTGAAATCTC
TAGAAAGACTTGTATTTAGGAACGGAGGGAGTACATGACATCAGGAGGGGAAATGTACAG
TCGTTAAGACATGAAAGAGGAAAAAGGCCAAATTTGCAAAAAAATGATAATCACAATCTC
ATGTATGTCTCACCTTTTTGCTTATCAGGGTCGTCCTGATATGACTCCGCGACATAATAA
AGGTGGTTGAAAAACTCCACCGTGAAATCTTTACGGCGCTTAGCAACAACATCACCAATT
TTATCAGATGGTGTGGATTTCACTACTTCAAATAGTTCATTATGCCTTTGTACGTCCTCG
TCTACCTGAAAAAGCACAGGGAACCATTAGCAAAGTGCCAAGTTAAATCATAAACCGAAT
CGTCAAGTGTATCCTGTAGATAAGGAAGCCCACGCCACCTCTTTCAGTTTTCTAGCCAGC
CTGAGAAGACCGTGCTTCATCTCAGGATTTGTTTCCGCGTCCGCTCTCTCCTGGCAGCGC
TTGAAGAAATGCGGCCTTATGTTGTCCCACTCCCTGCTGAACGCGAGCAGCTTCCTCCAA
TCCGTCGGGGTAGGCTTGTCGACCATGAACACGCCAATCAACTTGTCAGATATCTTGACC
ATTTTTTGATCGACGTTGGCAGTAGTAGCCTTGCCGTTTGTCTTGCCCGCGCTTCCTTCA
GGATGGTCTTGGTGCGATGAAGCGGTGGCCATATGGCCATTCGCATACCCACTGCTTGAC
GGCGTGTCCTCTATATAATCTTCGGGCACCGCTGCTGCCACGTCGCCGACCGCTTCCACG
TTGGAGCATCGTGGCTGGGGAGGGCCACGGAGCATGTGTTGTCCTGAGACAAGGAAAAAT
TGCAGGAGCGTTACCGTTCGTAAAAGGCGTTTTGTAATTTTTTGAAAAGTAGCTCAGGCC
GCGCTTGGTATCGATGTATTTCAATACAGAGGTATTTTATCTACAGGTGTAATTTACCGG
GCCAGTAGCGATTTCCGGCCGAAAGTGAAACGACGGCCGGAGGCGTGTATTGTTTACAGC
TGTATTGCTAATGAAAACGACAATCCAATCATGACCTCAAGGGGGACACAAACACTGGAT
AGCGCACAGATATGACCAGACAGACGTTAGTAAGCTGATATGCAGGATTCGAGCGTCGAA
GACCTGGTTTTGACACGGCATGGGTGGGATTGGGTCAACTAACAGGAAAAAGTTTCAGCC
TTTTTTTGTTTCTGTTCTGAGAATTGCAGCACACAGTTATTATAGCAAATGAGCCTGCTG
ATTTTTTGGAGATTATATATACGAGAGTAAAGAAAGCATTATCATTTAATGAGGGGGAAT
TCAATACAACACAGCACAGCTCAGCTTGGAAAATCCAGTGCAGAGTTAGCATAGCAATCA
ACCGTGTATCCACCGGTGGGCAGGCGAAGGGGAGGAACGTACCATCGCCGGCGGGGGCCG
GCCACGCCGTGGCGGCGCGCGGAGGAGGGGTGCAAGGGAAGGCGGCGCAGGTGAGGTATA
TGGGCGGAGGGCGTCGGGGAGGGAAGGAGCAGGATGGTCCGGGTCGCCGGAGCGAGCCGG
AGACGGAGCCGGAGGTGGCGCCGGCGGCGGCGAGGTAGGGCAGGGAGGCGATAGCAGCAG
CTTGGTCGGGAGTCATGCTGCTTTGTCTGTCAGACACCCGCGCAGCCCACTTCACTTCAC
TTTGCTTTGCTTTGCTTGCTTGCCTCTCTGCTGCAGGCCCGCCCAGAAAGGCCCAAATGG
GCCGCACTGCCCTGAATGTGCACCTTTCATTTCTGTACGGTGTGGGCTTTTTTTTTTTCC
GTTGTAATGAGTGTCTCCTCTCTTTTATAGAATGTAAGTTCAAGTTACAAGACAGACTGG
AAAGATAGGATAATCCTACGCAAAATGCCATTGTGTGTCCCTCTTCTTCGGCACCGTCGA
AGCGGCCGCAAAAAGGGAAAGGAGACGGGCCGCCTCTTTATCGAGCTCGACACGGCTCCA
TCGCTGACCTGCAGCTTTACGGGCCTCTAAAATATTTACCACAGGCAAAGACCATTGCTG
TTGAAAGAATCAGACGGGGGAAACATGTTTTCGGACACGACATCGAACTCTAGGTCTGAC
ACTAGGACAGAGGAGAGACTGCCCAGACATGCAGCCCGCTTCACTTTGCTTCCCTTGTCT
CTTGGCTGCAGGCCCGCCCACAAAGGCCCAATGGCCCACGCTCGCCCCGAACATGCATCT
TTCATTCCTGTACAATGTGGGCTTGCAGCACAGTCCACTCCTAAATTCTCTCTCCTAAAA
AAGAAAAATCTTGCAGGCCTTTTCCCTTTTTTCTCTATGAACTACGTTTCTCATATACAC
AACCTTTTCTTTACTAATTATCACTAGATGTCACTCGCATAGTGAGTTTGTTATCTTCTG
TGTTACTTGAATAATGCTGCCGAGCTTAATTCCATTTCCTTGATGCGTAGTTACACGCTG
ATAGGGATAGACTCTGCTTCAATCAAATTGTTTTCATCCAAGAGTAATGATAATCAAGCT
GTGCTTACCACCATATTTTATTTTCTATGTTTGCTAGTGTAAATGTTTAATACACAAAAT
CACATGCAAGAGAAAAACACTGTCATCTCATCTAGAAGCAGAGACCATTGACCTCTCCTC
TTGTCTCCTAACAAAAAGAAAAAGAAAAAAAAAAGAAAAAATAAATCATGTGTAACCCGT
GTAGAAAGGGGAAAACATCTTCGTCACTTTCAAGTCAGTCATGATATTCATCATCCTCAT
GGGGCTAACAATTAATTTGACCGTTTCTTCTTCTTCCATCACTTCTTCCTGTCAATGTTA
GCAGTGCCATCTATAGTCGACCAGTCAGCCAGTCAATTCATACATACGCATCTCCATCTC
AATCACACCCGATTACTAGAAACTACATACAAATGTATATAGACATATTTTAGAGTGTAG
ATTTACTTATTTTGCTTCGTAATATTGAAATCTTTAAAAAGACTTATACTCTCTACGTTC
GAAAATATTTATCGAAGAAATAAATGTATCTAGACGTGTTTTATTTCTAGTTACATTTAT
TTTTATCATTTTTTACAACTATTTCTGGATGGATTATCCATGAGATTCTCTTCTACTAGT
CATAGAAGAAAAGGTCCCGTATTGCGCATGGGTCACCCGTTTAGTTTTAGATAATTACAA
TTTATGATGGGCGAGTAAGGACACTTGAAGGGTTGATGGGCGATGGGATCCAATCTATGA
TTGGCGAACCCAAAAAAACAACAAATTGCCAGCCGAGCAACCGCCAAAGAGAAAAGGCGG
CCAAAGAGAATCATCACCGAGCCTTGACGGTACAAAACTTGAAGGACGATATATAAGTCT
CCTGTTGATACGATCGATGGAAACAGTTTGGTGGTATTCTATCTAATCCAGTGCAATCTC
CAACTCCAAATATATATACATCTCTACCACTTGGTGAACGCAATACAATCAAGAGTACTA
GCTGCACAAGAACGCTTTTCTTGAGCAAGCACTACTAGAGGAACTTGCGTACGTTGTTAT
AATATGATGATACAAGCAATTTGCGTACGTTGTTATATTCATCACGCCATATATGCAACA
CGCAGGAAATTTGTGTGTTGAGCGATGTACATCCATATCATGGATCCCATTTTGTGATAT
GTAGGAGTAGCTAGCTCACATGTGATCCAGTAGACTCTTGAGCCTGAGTTGGGCGCCGTG
CTGTGGCTGCAGCATGCCGACGGGGAACGGCGCGTGCGTGTAGTCCGGCGAGAGCTGCAG
GGAGAAGCGGCGCAGGACGGCGGCGATCCCCATCTTGGCCTCCAGCATCGCGAAGTTCTG
GCCGACGCACACCCGGGGGCCCCAGCCGAACGGGAAGAAGGCCGGCGCGGCCGCCGCCCC
GGAGACCCCCTCGGCGAACCTCTCCGGCCTGAACTCGTCGGCGTCGGCGCCCCACACCTC
CCTGTCGTGGTGCACGCACAGCAGGGGCAGCGTCAGCACCACGCCCGCCGGGTACCTCAC
GCCGCCCAGCTCCATGGGCTTGTACGTCTCGCGGTGGATCGCCGTCAACGGCGTGTACAG
CCGCAGCGCCTCGTAGAGCACCATGGTCACCACCCTCAGCCGGCCTAGCGCGTCGTGGTC
CGGCGTGCCGTCTGGGCCGAGGACGCGCAAGACCTCCTCCCTGGCCCGGTCCTGCCACTC
CGGGTGCATGCAGAGCAGGATCAGCGTCCACGTGAGCAGCACCGACGTGGTCTCCGCGCC
GGCGAAGTAGAACAGCTTGCACTCCCCGATCACTTCGTCGGTCGTGATGCCCGTGCCGGT
GTTCGAGTCCCTGCAGTGCGCCATGTTGGACTCCAGCAGCAGCCCGAGAAGGTCGTCGCT
CGTGGCCTCGCCGGCTCTCATGGCGCTCTCTCTTTTCGCGATGATGCCCTTGAGGACCCG
CTCGATCTCGCCGGCGATCTGCTTCATCCTCCGGTTGGCTTTTGTTGGCAACAGCCTGCA
CATAAGTATTGCATCAGTACAGCCGGCCTGCTGCAGTGCAATGCAGCATGAGAGTAACTG
CAACAAGCAAGGCAAGGGAACAACAACTCATGAGGCTCACATGTAACCAGGGATGTGTAA
CTTGCTCATGGCGAGCGTGACGAGCTCGAGCTGCTCGCCCTGAAGCTGGAAGATCCTCCG
TCCCTCCAGGTAGCTGCTGCCGAACGCAGCGCGGGAGATGACGTCCCCCGTCAGGTTCTG
CATGTCAGGCCAGACATCCACCTCGCACGGCGCATCGCCGGCGGCTAGGGCTAGGCCTTC
CCATCTCTCCACCAGCTCCGTGCAACATGCTGCGAAGGCCGGCAACATGCGCTGAAAATT
GATCAAACACCAGTTAATTTCTTTTGTCACTCCCTGGCATCAATCATGTTAATGACACAA
TAGAGATGGTATGTACATATATATCACCTTGAGCTTCTCCATATGGAAGGCCGGGTTGAT
GATCCTCCGGTGCTTGGCCCATTTCTCGCCCTCGTGGCTGCCCACGCCGTTGTGCAACAT
CCTCTGGAGCCGGCCAAACTTGAGCTTTTCAAAGTGGCCGAACTTGTTGGACAAAACCTC
TCGCACCAGTTCAGGCTTGCTAATGGTCACCCTGGGTACAGGTCCGAACCAAGTGAATGA
AATCTTACCTGTCAAAATGGGAAGCATCATTTCTTTGTAGTTTTGTTACCTGTTTCGATT
TTCATGTGCAGTTACTGTTAGTCTATTTATCTAAGTGGAGTATTTGTTAATTAGTAGCTA
CGAATATACTCCCTCCTATCTAAAATAATCGTTCTGGTTTTAGTTTAAAATTAAACCAAC
AAAACTATGACACTTATTTTGGATAGGGTGTTTGTTTAGTTTGTAATAAAGATGTTGCTA
GAATATTAACCAGCACAGTGGCCCACACACCAACTATTAGTTTTACAAATTACAATGGCA
TATGCACGGGCAATGACTTAATAGCACTTTTACAAATTACAATGGAAAAGTCTTAAAAGA
AATAATTGCTCATACCATCGACATTTAGAATTTTCTTGTCAATTTGCTTAGGTACATCTT
TAAATACCCATCGGTTGTGTTCCACTAATAAACAAAATAAGGATTATTTTCTTTGACACG
ACTACATAATTTGCTTTCAACATACTTGTTTCACAAAGACAACATCAGTAGTGATTCCTT
ATTTCTAGCTTAATCCTAGCCAGAATTTAAAGATGTGATGGTCGATATAATTTTGGTGAT
GTGTATTACTGCAGTGTCTAGAGGAGAATCTTATATTGTTCCTTTAGTATATAATATCTA
TATTGGTTTACCATGCATGCTTAATGAACGGCTGGTTAGGGCATCTTCAATGCTAAAAAT
TGTCAGAATCGAGATTATGAATCGGATTGAAGCTCCATTGTAGGACCGTGAATCGTAGAA
TCATAACTATCANNNNNNNNNAAACTTAGATTCTATGAGAAAAATCAATCGTAGAGTCGG
ATGGGCTAGTTTGGATCATAAGGTCGTAACATTCTAAGACTTGAGTCATGATTCTGACAA
CTTTGTCAGTGCTGCATCCCGAAGCGGACACACTATCCGTTTGTGGACTGCTTCCGGATG
TGTTCGCGGACGATACGAGAACATGCGGTTGCCGCAATGAACTCAAAAGGATTTTTTTGC
ACATAGCTTACTACCTTGCTTCCGTCAGAACACACATCAACAACTTGTGAATGAGAGTTG
TTCCCTATATATGATTGTGAGATTTGTTCCTGGTGATTGAGAGAGTTGTTCTCTATGATT
GTGAGATTTGTTCCTGGTGATTGAGAGAGCTTTTCCCTACGATTGTGAGGGCTATTCCTC
ACTCTTTCGAATCTCTTCTCTGTGTTACTTGTTCCTTGTGATTATAATAGTTGTTCCCCG
TGATTGAGATATTTGTTCCCGGTGATTGTCAGAGTTGTTCCCTATGATCTGTACCCATGC
CACGGATCAACCACTAGAATAGAAGTTGTCTTGCGCGGACGGAGGGTAGAGACGAGTAAG
TGGTGACTTTTGGTTCGTCGTGTGATTGTACGAACTCCCGCAAAGCTCCGATAGGTTTTC
TTCTAGGAAAAACGAACAAACGGATGCGTCTGCGAACAAATACAAGTCTATGTTGGATAA
CAGAATGCGTCCGAACTGTTTGATCCTAACGTTTGGGGTGTATTTGAGGGTTCGCGTTAG
AGGTGCCCTTACCCACAAGTCCGACGCATGCATCCACTAAAATAATAAGGATGGGATCTA
AAGTCTAGAGTTGAGTCATCATCACACAAGTGTAGTGTGGGTATCTTTCCTTGGACTATT
GAGACAATAGGAACACGGCCTTGGATGCAATCATGCAGCATGTGATTTTCTTTTTTGATG
CTCCATTCTTTGTAACACTCTTCATACAAATCTTTGTATCCTTAGATGTCTTCTTGGATA
CTTTAATCTGTTACTCCACGTGTTCCAAATTAATTGAAGTTTTACATGAGCCAGACTAGT
TTAAGTTTGGCCAAATATATACTAGAAAACACATAAATATGTATAACATTAGAATAGTTC
CTGGTGATTGAGAGAGTTGTCCCATGTGATTGAGAGAGTTATTCCTCACTCTTTAGAATC
TCTCTTCTCTCTGTGAAAATTGTTCCTTGTGATTATAATAGTTGTTCCCTGTGTTTGAGA
TATTCGTTCGTGGTGATTGTGAGAATTGTTCCCTGTGATGTGTACCCATCCCACGGATCA
ACTGCTAGAATAGGAGTTGTGTTGCGTGGATGGAGAGTAGAGACGAGCAAGTGATGGCTT
TTGGTCAGTCATGTGTTTGTCCGGAGTCTCATAAAGCTCCGACGGGTTTGCTTTTAGGAA
AAAACAAACAAACAGGCGCATCCACGGACAAATACAGGTCCGTGCTGGATGATAAAATGC
GTCCGAACAGTTTGATCGAGACGTTTGCGGTGTATTTGAAGGTTAGCGTTGGAGATGCCC
TTACCCCTCGAACGTGATGCATGCATCGCACTAAAATAAGAAGGGTAGGATCTAAAGTCT
AGAGTTGAGTCATCATCGCACTAGTGTAGCAAGTGTGAGTACGTATCTTTCATTGGACTG
TTATTGAGACAATAGGAACAAGGCCTTGGATGCAATCATGCAGCATAGAATTTTCTTTTT
GATACTCTATTCTTTTTAGTTTTTAACGCTTTTCTTTCAAATCTTTGTATCCTTGGATGC
CTTCTTGGATATCTTAATCTGTTAGTACTCCACGTGTTCCAAATTAATTGAAGTTCATAG
GTCAGTCAGACCAGATATATATACTAGAAAAACACATCAATATGTATAACACTAGAATAG
AATAGTTGTATTAGATTGTGTATATAGTAGGAGAAGCGTATATATGAGAACACACTTTTG
TCAAAGGCAGGACCAAAGAAATTTGAAATCAAAAGTAAAGAAGGAAGAAGGAAATTAATC
CAGATGGTCGAGCTCGAGTAGCTACGTACGTACCGTGCTCCTGCATGGCTCGGTGGAAGA
GCGGCATCGCCCGGGGCACGACGTCGTGGCAGCCCCGCCCCAGCGGCATGACCAGGGACC
TCGCCTCCCTGTTGAGCCGCTGCATCAGCGGCGTGTCGCCGGCGACGGGGCGGTACGTCG
TGCCGCGGAGGCCCTGCGACCGTAGCGCCCGGCCCAGCCGCCGGGGCCTCCACCACGCCC
ACTCCAGAGCCCGCACGGCGCACCACGCTGTGACGGCGACCGCCGCCGCGTACAGGTACA
GCAACTCCTCCCGTGGAAGAAGAGAAATCCATGGCGGCATCACGCTCGTCGCCATGGCCA
TGCTCAAGGGAGCTGCACCCCAAGGGGACTAAGACTTGACTGGGAATGGGATTTTCTCAA
GTCCTTGTCACCTTTTCTGAGCCAAGAAAAAAACACGTTTGTTATCCATGGGGCCTATAT
ATATATATATATGATGACAGGGACTTCCATTCATCTCGTCTGCCCCGTAGCTAGCTGTTG
TACATATATGATATATGATATATGTACGTAAGCAACACTAACTAATGTCATGCTTGTATA
CTTAACTAAGGAGCATTGGCATGTTTTCAACCTACACTTTAGATAGAGATAAATACACTC
GCGGTCACCATCACTGAACTTAAGAATACGCTCATTACGGCCACCATATACGTGAAGCGG
TGATTATACGAAGCGGTGATTATACGGTCACTGACTCACCTTATATATAGCACTGAATTA
CACTCTACTGACCATGTATATTATCCTTTTTGATTGAAGGGTGTGCCTTCTAATCTTCAC
CTTTGGTCTTCATCATAAACTTTCCTAGGGGGTGGTGTACCGAAGCAAAGTTCGTAATTT
GTATCGTTTATTAATAGTTACTAGCAAACATGCACGTGGATTGCAACGGAAGACAAAAAA
ATTTACACGCTAGCCTAATAAATATGACTCAATACCCCAACATATGAGCGTCCTCTATTT
TAACATGCTGGCTCACCATGTTGCCCATTATCTTTCTTTCCACTCTCGTTGATGATGGAT
GCAGTGTCCACGTGATCGCAATGCATTCGACGTGGTAACTCTCAAAGGCAATGAGCTTGC
CAACTGCATGACACACTTGTCATTATATAGCGCTAGGAAGTGTTTAAAACTTTAAAAGCA
AATCTCATCGACCACAAACTATTCCAACACCTACACATATCAAGACCTTCCAAGAACTAC
TCAAACCCTGGACATAAGAGTCTTTTAAATCGGCGAACAGTTTTTGGAGTTGACAAACAT
TTTTTTAAACTTGATCATTTTTTAAAATTCATGAACATTTGTTTTGTTTACGACAACATT
TTTGAAATGCGTGACTAGGTTTAGAATTCATGAACAATTTTCCACTCAGTAAACATTTTT
TGTATCAATGAACCTTTTTCAAATTGGGGACAAATTTTGAAATTCACAATTTTGTTGAGT
TTTTTTAATATTATCCGAAAATGTCATGTTCATTGTTTTTCAGATTCACGAATATTTTTT
GAATAATTCAAAATCATGTACACGATTTTATTTCATGGCTTTATTTTCCAAATAGTGATT
TTTATAATTTGCGAACAGTTTCACAAAATCAAATTTTTTTAAACTGTGAATATTTTATGA
TTTTGCACACATTTTATGAATTCACAAACATTTTACGATTACTCGAACATTTTTTTGAAT
TCACATTACTCGAACAGTTTTAGTCTTGTAAATTTTTTTGGAGTCTACTTAGTCTTGTGG
ATTAGCGCCGAGGTCCGAGGGCATGAGAATAAAGAGACTGCGCAACCCACTTAGAGCAAC
TCCAACCGGCCGACCCATGCGGACGACGACTTTGTCCTTTTTTGTTCGTTTAGGTCGGCC
CAGTGGACATCAACGTCCACTTCGACATTTGGGTCGGCGCATGTGCCCAACGCTGGACCG
ATCCATTTTGCCGACGCATCAAAAATAAAATTCAAACATTTCCAAAAATAAGAAACAAAC
CATAATTAAACATTAAAACCGGCCACGAAGGCCCGCGAGGGTGCACGCGGCCCCATTACA
ATTAAACATTAAAAAACCTAAACTACGAGGCTACCCTAGGCGGCATCGGCGTCGACATCG
GGGCCAGTGAGGTCAACCAGCGTTGGTGTAGGGCCGGCCCAGGGAAACGCCGTGTTTCAG
AGTGCCGCTTCCCATGCCTCCGTCGTCTGTCCCGCTGGCGTGGGTTGTGCTGGTGGCGGT
GGCAGCGCAGCACGGGCACGCTCCTCCTCCTTCATCTCCAGTCGTTCCTCCTCCGCCTCC
CGCTCCAGTGCCATATGTCGACGGTCGTCGGTGCGCTCCTACGCCAGGTGCATCGCCCTC
CAATGCCGGAGGCATGCGTCCTCCTGGTGCGGTGTCGCGCCCAACCAGATGGGCGGCTCA
CTGACCCACTCGCGGAGATAGCCGGTCCACCGGTAGACCTCCGTCTGCCGCTCCGTGGGC
TCGG