morexGenes - Barley RNA-seq Database

Contig contig_392660

Source Contig contig_392660

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_392660 (424 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_392660

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_54634	1	417 bp	MLOC_54634.1	Available	Available	LOC_Os01g64920.1, FRAME:+2, EVALUE:5e-16, 13101.m07004 protein nuclear matrix protein 1, putative, expressed

CDS Structure of MLOC_54634

Contig Sequence (424 bp)

>contig_392660 424 assembly3_WGSMorex_rbca.fasta
TTTCAAATTCAAGCGAGCCTTCATCCATCACAAAAATCATTTCAGACTGTGAATCCGCGC
TCACGTTCTTAAACAACAGCCTTGTCATCCTTTCAACTTCCGTGGCACGGGAGCAGGGTG
AAACGCTGTGATTTTATGGCCATCTTATACCAAGATTCAACTCTGGTACACGGGCGTAAG
CTTGTAGTGATTCAGTTGTTTGCCTTTTGGTTTCAGTTGAGGCGCCGACTAAAGCTTGTG
TTCCCATTGCCGGTGTGGTCATGTATTTGTGTGTGCTTGTTGATTCTTTTGCAGTTGTAA
CTTGTGACGTTCAGTGAACAATGGGATGCATAGGAAGATTTGCCATGCTTAACAATGCTA
TAATGTTCTGAAGAATTCGTTTTTCACATGAACTGTGCAGATATATGCCTCACGAGAGGA
CCGA