Map Locations of contig_39252 (10046 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_39252

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_54615 5 1791 bp MLOC_54615.1 Available Available LOC_Os10g33920.3, FRAME:+1, EVALUE:0.0, 13110.m03007 protein transporter-related, putative, expressed





CDS Structure of MLOC_54615






Contig Sequence (10046 bp)

>contig_39252 10046 assembly3_WGSMorex_rbca.fasta
GGAAATAATGTGTTCCCAACAATCTTTGGCACGAGTGAAGGTACGCAAGTGAGCAAGATC
TTCAATGGGAACAACTGCTTCAAGGATGAACTAGACGGAGTGATTGAGCTGATTTTCGAC
CTCTTCTCTTGGAGTGAGGTTGCTTGGATCATGTGGGTAGTACCCCTACTCAATGATTCT
CCAAAGTTGTGTTGAGGTGTGATTCAAATGAGCTTTCATATGTAAAACCCAATTAGCAAA
ATCATTCTTAACAAGTTTAGGCGGAGCACCGATGTTAATAATATGCGGTGGGTGAATCGA
TCCTCCATAGACCGCGGGAGGAGGAACCAAGGCTTAGGTATCCAACCCGCTCGTTCCTTG
AGGCAACTTATTCTTATCACTACTAGCCTTCTCCTTCTCGGAGTTGGCATCCCACTCCGG
ACCTGTGGGGTTAACCACTCGCATATGAATTGGTAGGAAGTGTGAGGCCTTCAAGGAAAT
CTTTAAGCATGGATTTGACCTCAGTAGCCACTGAGGATCTAAGGGAGGAAATAACATCAT
TTAGATCCTCTCGGGAGACCGTGTTCACATCCACGGCCTCGGGTAACTCCACGACCCCGG
TCCCCTTCGTCATCCATACTCTTTGGGTGGTGAAACCTTTAACAAAGAGTCGTAGCTCTA
ATACCAATTGAAAGGATCGATATGGTTGAATAGAGGGGGGGGTGAATAGGCAACTACCAA
TTTTAAGCTTTTCTTTCATAAATTTAGTTTAGCAGGTTGTCTAGATATGCAACTAAGTGA
GCAACCTGTATGATGCTAAGAACACCAATAACAAGCAAGTAAAAAATGTAAGTAAAGGTA
AGAAGTGACCACAAGTGAAACGATGAAGATGAGGATATGTTTCCGAAGTTCCTTCCCTTT
GAGGGGAAGTACGTCTCCGTCAGAACTGTGTGGAGGCACAATGCTCCCCAAGATGCCAAT
AAGGCCACTGTATTCTCCTCACGCCCTTACACAATGCGAGATGCCGTGATTCCACTAGTG
GTTCCTTTGAAGGCGGCAACCGAAACTTTACAAACAAGGTTGGGCCAATCTCCACAACTA
AATCAGAGGCTCCCAACAAAACCACGAAGCTTCACCACAATGGACTATGGCCTCGATATG
ACCTCTTCCATCTAGGGTGCTCAAACACCCAAGAGTAATAAAATCCACACAATAAAGTAT
GGGGGGATCAAGTTTCCTTTGGTGGAAGTGTAGATCTAGATCTCCTCCTCCAATCCCTAG
CAAATCAACCAGTTTGAGTGGCTAGAGAGAGAGATCGGGCAAGAAAGCTTGGAGGGCATC
AATGATGGAGAGACAAAGGTAAGAGGTAAAGTGGTAGGTCGAAGAAGCACCACTTTATAT
AGTGCCCCCATTTCCAACCGTTACAGCCGTTTTTTCAATGGGGTGGTACAACCGTTGTGT
GCACTCGTACAACCGGTGCACACAAATAATTCGCACCAGCCCTAACCAACGGTACAGCCG
GTGGCCGGGGTGGTAGTACCGGTCATCCAAGAGGACAGGAACAACCGCCCTACCATCGCC
CAACAACTGCTTGGAAACAGAGAGGAATCACCCTCGAGCGCTGTTGGGGCGGTGGTTGCC
ATGGTGCAACCTCTAGGAGAGATACGAGGATGCGACTAAGTCCTGGGCGGTACAACCGCC
CTAGACACCGGCAGTACCGGTCAAAGAGACATGACTGGAACTACCGGCCCGCAACGCCCA
AGTACAACACCATAATAGAGCCGAGCCTGATGGTGGGGCGGTACTGGGCCGATGCAACCG
CCTGATTCCGCCACTCGAGGGTTAGCCAGACTTTGGTGGTACAACTCCCCGGAGGCAGCA
GTACAACCGTTGGGGAGCACCCTGAGAGCAACAACTCCAGGGTTTCACCCCTCGAGTGGT
AGTTATACCTGACGTACCCATCTCAGCGGTACAACCGCTGGAACCAGCGATACAACCGCT
AGGAGAGAAGAAGCTGACAGGAGAAGAAATGAGGACCTCTCCCAAAGATCGGAAGGAATC
TTGGGTGGGAGATAAAGGATGTGTACGTGCATTGATTCACCCACTACCTTATGATGTGAA
TTCCCTCTTAATAGTACGGATTCTCTACGACCAAAGAAATAAACACTTAGAGAACACCAT
CTTCGTTCTTTTCTATTCGGAGGAAAGCCCAAACAACTTGTGTCCAAAGTAAGGTACGTG
AAGAACTTAACACTCAATTAGATCACATAATGAGTTGTCATCATCACCAAAACACTAAGG
CAGGAAAGTGCCCTAACATATAGGAATCAAAAAACAAGCATAAAAAATCTAAGATTCTAT
TCCTTCAAATTTTCAATGAAAATTCTTTGAATCAAATGAGCCCGGAGATGTACCCAAATG
GTATAAGTGCCACACGTCATGTGAGTGACACTCCGGTCCTAACGTTTTATGATGTCAATT
TCAGTCATGCAAGAATTTCAAATTCTAGTGACACACGGCAATTTTTTGTCAAAAATAAAT
CAAACACGAAAGTTGTCATGGTTGACAACTAAACTTGTCATTTTGGCGTTACTAAACTCA
CGATAAAATATGTTTGAAGTTGTCATGTGTTTATGTCACACCTTATGTAATACTCCCTTC
ATTTCAAAATAAATGTCATAGATTAAATACTAAACCAATATAAATTTTATACTAGATCAA
TGACGCTTATTTTGTAACAGCGGGAGTACTAATCAGGTCCAAGATGTCCAATTTGTTTTG
TTTTCTGCACATGCTAAAATGCTAAAACTTTTTATTTAAAAAAATTCAGATAGTATTTGA
ATGTGACAAAGAATACATTAAAATTAAAATTTTGCTTGATTTCTTTTTGACATCTCGATA
ATTATTTCCGTCAGGGAGGAGCACATGCTCCTGAAAGCCGAATTGCATTTTCGTTTATTT
GAAGCAATAGATTAATGCCGGGCACGTTTTCTTGGACGGACCCAAATTCCCAGAGAACCC
AGAGAAGTAGCCGTGCGCGGGATGCGTGATCAAAGGCGTGCCCCACATCCCAGAGACGAG
GCGACGAGCCGATGATGACTGCGACGGCGGGGCGGGTGGGCGGGCGCCTGAGTTGTTCAC
CACCTACCCTCCCTCGTCTCTCGAAGACTTTCCACCCAACTGATCACACCAACAGCAACA
GCTAGGCACAGCCCACGAACAAAGTGCCATTGATAAGTAGTAAGACGAAGCATTTCTTCC
TCCCCGGAGACACGAGGAGAAAGACGACGACTCCTCTCCCGCCCCACCTCGGCCCCGAAC
CCCCGATCGGAAAATCTCAGCGGAAGCGTTGCACGTCTCCCCGGGCGCAGGATCTCGGGG
CCCGGCGGAGAACGTGGACCGGCACCGGCACGAACGCCAGCTGATCGAGCAAGAGCCTAG
AGGTACGTACGCACGTCTGTTCGTTTCACCGGGGAGTTTCCAATCTCATCTGCTGCGCCG
CGTAAGGTAGCAATATAGCGTAGCTGCTTACGATCGATCGGTACTCTCTGTTCTTTCGTC
GATTGGAGCCGAGTTGTCGGCCGGCCGCATGGGCAGCGCCGATCAGTCGGCGGCGGCGGC
GGCGGCGGCGCTGCTTCTCCGGGGGATCCGCGACGTGTTGGCCCTACCACAGCACTGCTA
CGCCGCTAGATTACTGGAAGAGTAGAGCCAGCGCCGCCGCCTGCGACGGACGGGACGCGT
ACGTTTCCTCTGGCCTCCTCGCCGGCGCCGTGCGTGCTCGAGCGCACGCCACGAACCAAC
TGCGCCCTGACACGTGGCGTCCGTCGGTGGCTGGCGTGGCGGCGCGCTGGACTGGCCAGG
GATGCCTCCCCCGTTCGTCCTAGTAGGGGCCAAATTGTTGGCAGGTGTCGCCGTCCGTCC
GAGCGGAAATATCTTCGCCAGTTTCTTCTTCTTCCCGGTGATCAGGGATACGTTCGACTC
TAATTGCCCTCTTCTCGGAGCAAATCGCGCGACCAGATTTATCGCTCGCGTGTTTTCTTT
CAGAAAACATCCGGATCTGTTTAACAAGTCATCAGAAGCCCAAAGCACCCCAAATAATGA
AATTACACCAAGATCTTTGGAGCAACGAACGATCATTATCATTGTTAACGAGCCAGTCAC
ACCTATCGTCAAGAAATCTTTGTGCACGTGGCCCTAAAGACCAGCGCCTTGAAGCCGCAA
TCGTTGTTGTTAAACCTTTAAATTGATCTGATGTGCCTGACATCAGATCACTTCGTCGCA
CACAAACGTTGGAAAATCCTGACCTCGTGGTCATAGTAAAGCCAAAGAAATCTACATCCA
TACTCTATCGGTTCGGTTCAAACAAACGGACTAGAAAAGGATCAAAGCCCCGAAAGCCAA
CTCAAATAAAAAGGATTGTCATTCGCCTGATCGGAGCCTGAAAATTCTTCTCCCCGCCGC
CAGCCGTCGAAATGGCAGGCGCAGAGGAGGTGAATGCAGCGAATCGGCGGACAAAGCCGA
TATTGCTTGGAGGGAAAGTGGCCTAAGGAAAAGAATACTTCGTTATTGCTCGCGCTTTGT
TTTAGCTCGTATGACTATGAGGGTGTTTGGATACGTTTTAGTCCCATGACTGAAAATAAT
GAGACTAAAACTTGCTAGCCTCATCCATGCTTGGATCCAAATACTAAAAAAACTAAAATC
AAGTTAATGAGTAATTATTATCCTCCAAACCCTCCAATCCAGAACTCGCCTGTGTTAAAG
GGGAGGAGTTAAATGGGGAGAGAGATGACTAATCCACATTTTAGTATGGATATCCCTGAT
TAAATTTTTTTAGTCTGACTAGTTTTATCCTCTCTTTAGTCAGTGGTGCTTGAAACTTCA
GCCTCTTAAAAAGATTATTTTTAATCAGACTAAAATAAATATGTTGGATCCAAGCACCCT
TTATACCATCGGATCCGTAGTTGTTCTGCTACATCCGATCTGGAGATCGTACTGCCTGCC
TCTCTTCGCGAAGGTTTGACTTGCACATTAACTAAACGTGATCTACCCAGGATAAGGCCC
GTACACATAGATTCAGATATAAATTTTGTAGTGAAGTTTAGTCAGCAATATAAACCCACT
GTCGTATGTTTGTATTTGTAATACAAATAACTACAGGTTTTATTCATGGGTTCAACCATT
TCATTGCATATCAATACCTTAATTCCCGACCACCAAGGTTTACGATCATTGACAGCATAT
CATGGAGGAATTAACGTTCAAGTTCCAGTTTCCATGCTAGGTCAAACCAAGAAGTAGATG
GGTGACGTGGCGACAAGTGTGTGTGCTGATTAACTGAGAGAGCTGTCACGCTCGGGGTGA
CGTGGCGACAAGTGAGTATTCAGACGTAGCATAGGAGGAGCTTCATCCGTAGCATCTTCC
TGTAGTCGATGCCCCTATCAGACTATCAGTCCATTCTATGCTCTGATGTGACCACCCACC
GAATGTGCAAACCAGTCATCAGTAGTACTAAGAAACACCAGAGTTTGACACTTCAAAGCT
GCCTCTGCCTTGTCCCAGTTGGTGGAGTACTCCGGCGAAGGACCACTATTTGCCCACAGG
TAGCGTCGCTGATAGCTTTTGTGTGGTAGCACTTTTTTTTTAAGAGGAGGTCAAACCCTC
GGTTTCTTTGCATGAATTGATGCATATAAACATCTTTATTAATTATTTAACAAAGGCTGA
TAAAACATACTCCTTCCGTTTCTAAATATAAGTCTTTATAGAGATTCTACTAGTAAACTA
CATACGAATGTATATAAACATACTTTTAAGTGTAGATTCACTTATTTTGTTCCGTATGTA
GACTCCTAGTGAAATCTCTTAAAAAACTTNTATTTAGGAACGGATGGAGTATATCAATTC
ACTCGAAGTCATCACTCACACATATAAACTCGATAATATGGAGTGTTCTTACTTTTCGTA
TTTAAAACCGATGTCATCGTAATTCCATCCACATAACGTATTGGGACCAACAACCGATGC
AGTACATCTAAAGCGCACACCACATACACACGTTTTAAAGGCCGCCTTCATCATCGGACC
ACTGACCCATCTTCAGGAGAGAAATCAGCATCATCATTGTCAGTCCGGACATCCGTCGAC
GCCACCACGCCCCTCATCCGTCCATACGCGAAGACTCTCGAAGAACTGTCATGCGTAGCA
CATGCCAACCAGGCATAACTCAGCATAGCACCTGTCTTCCACGCATGACTTGACAGCTTC
ACCAAATCCTTATGCAGGACGAAACTGCTCCACCTCCTGCCTGTGTCATCCAGCGCTGCT
ACACAAACGATGCTCCCAAGAGTGGAACGGTGCCGTAGTACTATCATCATCCGATCTGGA
AGACCAGATCCTAGGGTTTTCCCCGAAGCAGTGCCCACCACTAGTAACCGTCAAGGACCC
ACACAGTGTCCACCACCAACTCAGCCCTCAAGGCGACGCCTTCCGGAAGATCACAGCGTA
AAGGATGCCGCCGCCGCCCACCGAAGTTACGGTTTTCATCTGAGAGGCAGGGAGGGGGAA
TCGGAGGAGCAAACGTAAAAGATGAAAAAGTTACGCCCTTGAGTGTCGTGGTTGGTGCGG
TCGGCCGGGGCCGACCAAGGGGTTTCCCCCAATTTGGATCTCCTCCACCAGCTTCACCCT
CGCCGCCGGCCAGGGTCCCGGCAAGCCATGCCGGCACCACAGGAGACCCGTGGAAGAGAA
GCACACCGATCAGGGCCGAAGGAAAGTGGCCAGATCAAGCGTCGCCGGTCAGCAGAGCAG
CCACGCCAGGCGCTGATTCATCGAAGATCCGTCGTACGTCCGACCAGACCACTAGCACCA
TGTCAGCCTTGTCGCTTGATGCATCCATCGAAGCCATCTATCTGCATGCAGCCGCCACAT
GGCTGGCCATGGAGGCTTCAATCGTCGCCTCCGCATCAGGGGTGCCGCCCTGACTGCCGC
ACTTACACCGCGAGGTACTCCAGGACGCCGCCCATCCGTGCCCCGTCGCCACAGGTGCAC
CGAGCATCGTCGTCCTCGGCGCGCCCCACGTCGGCGCGCCCACCCTGCCGTGGCACCCCC
GAGCAAGGAGGAAAAGGGCCCCACCGCTATCGACGCGGGCCAGGTATTGCCCGGCTACGC
CTTCTGGCGGCAACGAGGGAGGAGTGCGGTGGAGAAGGAGACCGGCGGGTGCAACTGGGG
AGCCCTCCCTGTCGCCTACGGGTGCGACGAGGGAGGGACAACGGGTTCTCGGTGGACGAG
GAAGGGATGGACGGTGCGACGGGGGAGGCCTTCCTATCGCCTACGGGTGCGATGACGGAG
GGACGACGGGTTCTAGTGTGATGAGTGGTAGCAATCATGGAATTCTTTAATTTGTTGTTT
TTATACAGATGAAGCCATGTGAGACTCTAATTTGTTTTACTGCTCGAACGTGCTATGGAG
TTTCTGCTAGTGCTCGTGTCAACGCCTGGCTTGTTTCCCTATGCGAGTTCACGTGGTTCC
TTGATGGATAACCATAGTATAAATATTTGTCAACTTAACCAGCTTCTGCTCGCTCCTGAT
TTGCCTGGGAGCACTATGCATTGGTGGCTTGTTCAAAAAATGTACCCCTATATATCATAG
TATAACTTTTTTTTTAAAACGGATATCATCATATAACTTCTCACTCACCAATTGGGCCTT
CATCTACCACCAGGGGACAGAGAGAAAGAGGTTCAGAAGACGAAGAGGAGATGTCGTCCG
ACGGCGGGGGCTCCCAGATGGGCGTCGCCGGCGCGCTGGGCCTCTCTGTCACGTCGTCAG
TAGCCATTGTCATCTGCAACAAGTACCTCATGAGCACCCTTAAGTTCTACTTCGGTTAGT
ACTACAACTTTCAGGGTTTCAGACTCGGTGCTGCTGCTTTTTACTCGGTCCGACAATACT
TTTGTAAAGTTCGCAAAAAGGAAATTCCGATCTTTGCATACGGAGAAGTATTTCTGATTT
GTGCATTCTTGAAATTTGGATACGCAGCGACGACACTGACAAGCTGGCACTTGCTGGTCA
CCTTCTGCACGCTTCACATAGCGCAGCGTCTGCGCTTCTTCGAGGCGAAGCCAATTGACG
CGCAGACTGTCATCTCCTTTGGGTTTCTCAACGGGATCTCCATTGGCCTCCTCAACCTTT
GCCTTGGCTTCAACTCAGTTGGCTTCTACCAGGCAAGCTGAGAATCCTCCTCTTTACTGA
CCCAAACTGTTGATGATAGCTCATACCATTTCATTTGTTTTCTTTCTCGTTGATTTGCTA
TGCTTGTCTTGCTACAGATGACCAAGTTGGCCATTATACCATTCACCATGCTCTTGGAGA
CCATCTTTCTGAGCAAGAAGTTCAGGTGCTTCTCAGATTCCTCCTTGCATTGCATAACTT
CATTAGACCTCTCCTGAACATCGAACACTTATCATCTTGTAACAAGTTCAGCCATTCTCA
TGCTCCACGATCGTTAACCGTGCAGCCAGAGCATTAAGGCTTCCCTCATGGTCCTCCTCC
TGGGGGTTGGCATCGCATCGGTCACCGATCTCCAGCTCAATCTCCTTGGCTCGATCATCG
CAGTGCTCACTATCGCCGCGACCTGTGTCTGCCAGATCGTATCCTTCTGCTCTGCCCCTC
AAGCTATTAGCCTGTTACACATTTGCAGTTGCACCCTGAATATTTGTGTTCATGTCATCT
TCCTTGACCTTGAACAAAGCTGACCAACCAAATCCAGAGGAGGCTCAAGGTGTCTTCCAC
TCAGCTACTGTACCAGTCCTCCTTGTACCAATCTGCAGTGCTGCTCATCACCGGTCCCTT
CGTCGACAAGCTCCTGACAAAGAAGGATGTCTTCGCGTTCGAGTACACATTCGAAGTCGT
GGTACGTACTAGATGTGCAGCAGCAGCAAGAACTGAACTTGTTGATCTAAAAGATGGATG
AATTTGAGCTGCGCGTCTGTGTGTGTTTATATCGGCTGGTTCGGTGATGGTTGCTTTATA
TATAAAGCAGAGGAAGACCCCTTTGTTGTCATTTGAGCTGCGCTGAACTAACTTTCTGGG
CGCAGGTGTTCATCCTGCTGTCGTGCGGGATCGCGGTGTCCGTCAACTTCAGCACCTTCC
TGGTGATCGGCACGACGTCGCCAGTGACGTACCAGGTGTTGGGCCACCTCAAGACGTGCC
TCATCCTCTCCTTCGGCTACGTCCTCCTCAAAGATCCCTTCACACTACGCAACCTCGCCG
GCATCCTCATTGCCATCTTCGGCATGGGCCTCTACTCCTTCTTCTCCGTCTCCGAGAGCA
GGAAGAAGACCGAGGGCGCCATGTTGCCTGTCAACACCCAGGTCCGTACTTTTCCGGAAA
CGTTAGTATCTGAACGTGGAATGGCGTATGACAAGGTTGTAACCAGTGTGTGCCCTTGCA
GATGAGCGAGAAGGATTCAGCACCGCTCCTTGGCACGAAAGCCTCGCCGTGGCAGGAGAG
CAGCGGGGCGGAGAACTTCGACGACGTGCCAAGGACCGCGAAGAGCGCATTTAGCCGGCA
GCTGAACCCGTAGCTTAGGATGGATGTGCTTGGTAAGTTGGTATATCAGCATCAATATCT
ATTCTTTCCCCTTGGGGGTTTCTCCTACAATGACGAGAATTGCTCGATGATGAAAGCAAC
GGTGGTATTGTAAGGTGGTTCTTTTTTCGAAAATGAGCCAAAGCCCCGGCCTGGAAAGAT
GTATGCATCCATATATTAAAATCAAAACCAAGTCTCATCAAAGTACACGAAAGGTTTAGC
AAAAAGTGAATAAAAAGATACAAGACGTCTGTCGCGTCCAAACCGAAGATGACAATAGAC
CTAGATGACTAAACACCTATCATATTAATATGTCGTCATCCAAATCGGTTGAAGATACCC
TATGCTACCATCTTCCAACGGACACATCCAGTAATCATAGGCTCTCTAGCTTTCACAGGA
GTGAGTAATGACCACGTGCGGATCAGTGCGGTAGCCCTGAAGATAACCTGCAAGAAGTGA
ATATCGCGTTGTCTGTTAAACACTAA